Wall clock time and date at job start Tue Mar 31 2020 12:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 116.99928 * 2 1 4 4 C 1.38561 * 120.07841 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.00433 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14367 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.92420 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.00031 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.34464 * 34.29471 * 9 8 7 11 11 C 1.51105 * 110.38355 * 272.01002 * 9 8 7 12 12 C 1.30526 * 111.10217 * 224.75222 * 11 9 8 13 13 C 1.51101 * 111.10465 * 359.97438 * 12 11 9 14 14 C 1.54628 * 110.38793 * 156.58679 * 9 8 7 15 15 C 1.38240 * 120.14455 * 0.27575 * 6 5 4 16 16 C 1.38565 * 120.00067 * 359.49356 * 15 6 5 17 17 O 1.35996 * 120.06875 * 180.25131 * 16 15 6 18 18 C 1.42900 * 117.00309 * 0.23600 * 17 16 15 19 19 C 1.53000 * 109.46759 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.46658 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00453 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99799 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00174 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46813 * 89.99760 * 24 22 20 26 26 H 1.48492 * 109.47439 * 210.00351 * 24 22 20 27 27 H 1.48499 * 109.46736 * 330.00666 * 24 22 20 28 28 H 1.08996 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46811 * 300.00224 * 1 2 3 30 30 H 1.09000 * 109.47336 * 60.00036 * 1 2 3 31 31 H 1.08000 * 119.99780 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.92652 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47558 * 330.00195 * 7 6 5 34 34 H 1.08998 * 109.47216 * 209.99857 * 7 6 5 35 35 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 36 36 H 1.07997 * 124.45155 * 44.73227 * 11 9 8 37 37 H 1.08003 * 124.44645 * 180.02562 * 12 11 9 38 38 H 1.09008 * 110.38486 * 135.24660 * 13 12 11 39 39 H 1.08994 * 110.38856 * 257.62549 * 13 12 11 40 40 H 1.09000 * 111.03684 * 261.47549 * 14 9 8 41 41 H 1.09008 * 111.03627 * 25.40836 * 14 9 8 42 42 H 1.08006 * 119.99855 * 179.74309 * 15 6 5 43 43 H 1.09002 * 109.46568 * 299.99188 * 18 17 16 44 44 H 1.08996 * 109.47219 * 59.99719 * 18 17 16 45 45 H 1.08995 * 109.47404 * 299.99097 * 19 18 17 46 46 H 1.08996 * 109.47368 * 59.99952 * 19 18 17 47 47 H 0.97002 * 120.00176 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3030 3.6798 -0.0005 7 6 3.9837 5.0242 -0.0005 8 7 4.2044 5.4614 1.3845 9 6 4.8672 6.7718 1.4237 10 1 4.5347 7.3897 0.5896 11 6 6.3684 6.6036 1.3885 12 6 6.9486 7.3761 2.2661 13 6 5.9311 8.1888 3.0325 14 6 4.5799 7.4808 2.7675 15 6 4.0603 2.5233 -0.0052 16 6 3.4359 1.2863 0.0001 17 8 4.1795 0.1476 0.0007 18 6 5.6003 0.3006 0.0008 19 6 6.2617 -1.0791 0.0021 20 6 7.7601 -0.9177 0.0016 21 1 8.1969 0.0700 0.0001 22 6 8.5733 -2.0312 0.0032 23 7 8.0415 -3.2339 0.0045 24 14 10.4306 -1.8313 0.0018 25 1 10.9235 -1.7758 1.4016 26 1 11.0522 -2.9849 -0.6966 27 1 10.7926 -0.5739 -0.7005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2147 2.3197 -0.0014 32 1 1.3343 4.5115 -0.0019 33 1 3.3541 5.7504 -0.5147 34 1 4.9421 4.9463 -0.5139 35 1 4.7317 4.7735 1.9011 36 1 6.8925 5.9321 0.7246 37 1 8.0158 7.4283 2.4232 38 1 6.1623 8.1798 4.0977 39 1 5.9023 9.2120 2.6580 40 1 3.7713 8.2042 2.6632 41 1 4.3568 6.7573 3.5517 42 1 5.1386 2.5839 -0.0090 43 1 5.9066 0.8499 -0.8895 44 1 5.9064 0.8508 0.8906 45 1 5.9554 -1.6280 0.8926 46 1 5.9556 -1.6296 -0.8874 47 1 8.6136 -4.0173 0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850358237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:04 Heat of formation + Delta-G solvation = -57.602675 kcal Electronic energy + Delta-G solvation = -25734.471189 eV Core-core repulsion = 22075.053630 eV Total energy + Delta-G solvation = -3659.417560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53118 -39.92616 -39.47122 -38.25826 -35.59349 -35.23539 -32.52893 -31.54347 -30.75466 -29.85325 -28.58101 -27.33903 -26.96047 -24.99310 -23.94372 -22.56746 -21.93571 -21.48927 -19.84932 -19.50728 -18.63990 -17.83801 -17.55490 -17.16926 -17.13079 -16.57651 -16.54034 -16.33968 -15.62932 -15.58202 -15.16788 -15.01553 -14.69599 -14.34026 -14.16137 -14.05062 -13.41840 -13.17747 -13.16084 -12.98236 -12.78731 -12.69868 -12.65487 -12.56883 -12.37914 -12.28706 -12.08759 -12.00461 -11.91796 -11.73852 -11.59405 -11.56226 -11.41235 -10.63769 -10.09973 -9.67631 -9.28033 -8.71232 -8.27837 -6.42217 0.29826 0.46590 1.28876 1.38982 1.41881 1.52892 2.26116 2.43011 2.50476 2.68429 3.06207 3.37556 3.73600 3.77909 3.84491 3.92332 4.07703 4.13378 4.23157 4.23867 4.31956 4.39178 4.41793 4.43250 4.45800 4.56689 4.61994 4.64787 4.70932 4.73580 4.74676 4.86069 4.93567 5.03520 5.19855 5.26402 5.29060 5.31162 5.33893 5.44524 5.58013 5.61548 5.66885 5.80114 5.85261 6.03932 6.10309 6.24589 6.37956 6.70869 6.73829 7.27949 8.85597 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.003747 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.789972 B = 7471.804854 C =11039.040832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.166 4.166 5 C -0.094 4.094 6 C -0.082 4.082 7 C 0.108 3.892 8 N -0.677 5.677 9 C 0.109 3.891 10 H 0.094 0.906 11 C -0.222 4.222 12 C -0.154 4.154 13 C -0.103 4.103 14 C -0.109 4.109 15 C -0.174 4.174 16 C 0.069 3.931 17 O -0.337 6.337 18 C 0.086 3.914 19 C 0.031 3.969 20 C -0.546 4.546 21 H 0.071 0.929 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.977 3.023 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.259 1.259 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.340 0.660 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.128 0.872 43 H 0.057 0.943 44 H 0.057 0.943 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 24.096 2.508 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.029 3.971 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.020 4.020 8 N -0.306 5.306 9 C -0.001 4.001 10 H 0.111 0.889 11 C -0.242 4.242 12 C -0.173 4.173 13 C -0.140 4.140 14 C -0.147 4.147 15 C -0.193 4.193 16 C 0.024 3.976 17 O -0.251 6.251 18 C 0.012 3.988 19 C -0.007 4.007 20 C -0.584 4.584 21 H 0.089 0.911 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.800 3.200 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.183 1.183 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.145 0.855 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.481 23.785 2.562 27.460 hybrid contribution 2.007 -0.955 -0.370 2.253 sum -11.474 22.831 2.191 25.645 Atomic orbital electron populations 1.23345 0.76454 1.05263 1.02511 1.86184 1.23505 1.26773 1.89233 1.18648 0.89025 0.86283 1.03157 1.21339 1.01010 0.90445 1.05619 1.21002 0.93404 0.97639 0.99246 1.19627 0.94059 0.93717 1.00844 1.20836 0.98587 0.92333 0.90276 1.60763 1.52678 1.04525 1.12592 1.21555 0.88448 0.90697 0.99385 0.88858 1.24087 0.98055 1.01253 1.00802 1.23538 0.99986 0.96844 0.96912 1.21482 0.92768 0.99253 1.00485 1.22526 0.97275 0.98986 0.95939 1.21083 1.00461 0.90884 1.06885 1.18859 0.89400 0.86691 1.02654 1.86179 1.20268 1.29866 1.88833 1.22818 0.75945 0.99937 1.00099 1.18933 0.94803 0.91160 0.95769 1.21384 0.91006 0.93712 1.52279 0.91115 1.26071 1.05022 0.94556 0.94072 1.70133 1.37716 0.98684 1.50537 0.85267 0.77665 0.78294 0.78728 1.19441 1.20536 1.18274 0.87255 0.91209 0.91117 0.81846 0.82518 0.88270 0.94657 0.84259 0.86932 0.85404 0.90411 0.89296 0.89477 0.91282 0.85451 0.92481 0.92459 0.98604 0.98601 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.65 10.28 -79.59 -0.82 -12.47 16 3 C 0.07 2.47 6.70 22.57 0.15 2.62 16 4 C -0.17 -3.94 9.04 22.35 0.20 -3.74 16 5 C -0.09 -2.04 9.69 22.27 0.22 -1.82 16 6 C -0.08 -2.02 5.39 -19.86 -0.11 -2.12 16 7 C 0.11 2.11 5.64 85.55 0.48 2.59 16 8 N -0.68 -13.08 6.28 -495.90 -3.12 -16.20 16 9 C 0.11 1.78 3.21 44.85 0.14 1.93 16 10 H 0.09 1.39 7.84 -2.39 -0.02 1.38 16 11 C -0.22 -4.03 10.08 26.26 0.26 -3.76 16 12 C -0.15 -2.47 10.78 26.26 0.28 -2.19 16 13 C -0.10 -1.32 6.81 30.60 0.21 -1.11 16 14 C -0.11 -1.55 6.91 31.77 0.22 -1.33 16 15 C -0.17 -5.55 8.69 22.35 0.19 -5.35 16 16 C 0.07 2.66 6.70 22.57 0.15 2.81 16 17 O -0.34 -15.80 9.92 -79.64 -0.79 -16.59 16 18 C 0.09 4.04 4.68 71.98 0.34 4.38 16 19 C 0.03 1.76 5.34 29.85 0.16 1.92 16 20 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 21 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 22 C 0.00 0.08 5.46 84.66 0.46 0.54 16 23 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 24 Si 0.98 44.25 29.54 68.60 2.03 46.28 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 31 H 0.16 2.69 6.30 -2.91 -0.02 2.67 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.10 1.55 8.02 -2.39 -0.02 1.53 16 34 H 0.04 0.72 8.08 -2.39 -0.02 0.70 16 35 H 0.34 7.52 8.46 -89.69 -0.76 6.76 16 36 H 0.11 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.12 8.09 -2.38 -0.02 1.10 16 42 H 0.13 4.08 6.30 -2.91 -0.02 4.06 16 43 H 0.06 2.50 7.65 -2.39 -0.02 2.49 16 44 H 0.06 2.51 7.67 -2.39 -0.02 2.49 16 45 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -72.66 387.49 2.50 -70.16 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.20 Total: 21.28 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.71 Total: -34.67 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.83 Total: -73.99 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -1.61 Total: -29.06 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -72.66 2.50 -70.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850358237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.559 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds