Wall clock time and date at job start Tue Mar 31 2020 12:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00212 * 2 1 4 4 C 1.53000 * 109.47289 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47386 * 64.99848 * 4 3 2 6 6 C 1.46496 * 120.00159 * 270.00263 * 5 4 3 7 7 C 1.50701 * 109.47212 * 269.99468 * 6 5 4 8 8 H 1.08003 * 119.99846 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00277 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99911 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00070 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46757 * 90.00131 * 11 9 7 13 13 H 1.48496 * 109.47496 * 209.99987 * 11 9 7 14 14 H 1.48501 * 109.47071 * 330.00474 * 11 9 7 15 15 C 1.34777 * 119.99896 * 89.99472 * 5 4 3 16 16 O 1.21619 * 120.00282 * 0.02562 * 15 5 4 17 17 C 1.47104 * 119.99994 * 180.27363 * 15 5 4 18 18 C 1.33000 * 119.99956 * 186.49369 * 17 15 5 19 19 C 1.50700 * 119.99866 * 15.12399 * 18 17 15 20 20 C 1.52992 * 109.47555 * 135.86707 * 19 18 17 21 21 C 1.50700 * 109.47822 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00092 * 269.73196 * 21 20 19 23 23 C 1.38236 * 120.00228 * 179.76073 * 22 21 20 24 24 C 1.38239 * 119.99477 * 0.50431 * 23 22 21 25 25 C 1.38228 * 120.00225 * 359.74616 * 24 23 22 26 26 C 1.38233 * 119.99900 * 89.99363 * 21 20 19 27 27 H 1.09006 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47185 * 299.99958 * 1 2 3 29 29 H 1.09002 * 109.47074 * 60.00207 * 1 2 3 30 30 H 1.08997 * 109.46724 * 59.99645 * 3 2 1 31 31 H 1.08996 * 109.46647 * 300.00418 * 3 2 1 32 32 H 1.09005 * 109.47067 * 304.99894 * 4 3 2 33 33 H 1.09000 * 109.46658 * 185.00188 * 4 3 2 34 34 H 1.09001 * 109.47183 * 29.99829 * 6 5 4 35 35 H 1.09010 * 109.47227 * 149.99859 * 6 5 4 36 36 H 0.97002 * 119.99851 * 179.97438 * 10 9 7 37 37 H 1.07994 * 120.00298 * 6.50086 * 17 15 5 38 38 H 1.07996 * 120.00262 * 195.11234 * 18 17 15 39 39 H 1.09000 * 109.46755 * 255.86750 * 19 18 17 40 40 H 1.09001 * 109.47420 * 15.86568 * 19 18 17 41 41 H 1.09000 * 109.47124 * 299.99817 * 20 19 18 42 42 H 1.09001 * 109.46870 * 59.99524 * 20 19 18 43 43 H 1.08003 * 119.99934 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.00421 * 180.22891 * 23 22 21 45 45 H 1.07997 * 119.99675 * 179.72369 * 24 23 22 46 46 H 1.07997 * 120.00160 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.00036 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1052 -0.8920 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2196 -0.5460 -0.6537 9 6 5.8607 -2.6288 -0.9527 10 7 7.0787 -2.9829 -0.6051 11 14 4.6180 -3.9291 -1.4570 12 1 4.7038 -4.1538 -2.9225 13 1 4.9121 -5.1980 -0.7438 14 1 3.2503 -3.4694 -1.1060 15 6 4.2615 1.3337 -2.3217 16 8 4.1543 2.5429 -2.2470 17 6 4.6978 0.7105 -3.5808 18 6 5.1032 1.4711 -4.5937 19 6 5.4425 2.9205 -4.3589 20 6 6.7401 3.2660 -5.0922 21 6 7.0791 4.7155 -4.8579 22 6 6.6092 5.6841 -5.7250 23 6 6.9160 7.0143 -5.5073 24 6 7.7015 7.3748 -4.4284 25 6 8.1757 6.4057 -3.5643 26 6 7.8645 5.0760 -3.7790 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8515 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3853 -1.3629 -0.6733 35 1 3.9120 -1.2114 -2.3669 36 1 7.3316 -3.9193 -0.6102 37 1 4.6887 -0.3646 -3.6827 38 1 5.1895 1.0500 -5.5845 39 1 4.6346 3.5483 -4.7348 40 1 5.5714 3.0951 -3.2907 41 1 7.5480 2.6382 -4.7163 42 1 6.6112 3.0914 -6.1604 43 1 5.9994 5.4020 -6.5706 44 1 6.5458 7.7714 -6.1826 45 1 7.9449 8.4135 -4.2609 46 1 8.7897 6.6872 -2.7216 47 1 8.2354 4.3188 -3.1042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865158496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:44 Heat of formation + Delta-G solvation = -54.355867 kcal Electronic energy + Delta-G solvation = -26195.402564 eV Core-core repulsion = 22536.125797 eV Total energy + Delta-G solvation = -3659.276767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99485 -40.12437 -38.80735 -36.94942 -36.02114 -34.55486 -33.44512 -31.74134 -31.61873 -29.80169 -29.14799 -27.18659 -25.49756 -24.38146 -24.02365 -23.43360 -21.92246 -21.71770 -19.29907 -19.05082 -18.23207 -17.61098 -17.27512 -17.12802 -16.73057 -16.30043 -16.11174 -15.91411 -15.85249 -15.48129 -15.13231 -14.55992 -14.42877 -14.38232 -14.17524 -13.90459 -13.85938 -13.69558 -13.39118 -13.14085 -12.97075 -12.76864 -12.74909 -12.59798 -12.43393 -12.10866 -12.04338 -11.93393 -11.75530 -11.70314 -11.55869 -10.77829 -10.66176 -10.40501 -10.11787 -9.79628 -9.54006 -9.31393 -8.28512 -6.34597 0.41514 0.52272 0.58231 1.39185 1.42065 1.53681 2.31781 2.36240 2.45137 2.90399 2.91418 3.06257 3.78040 3.87339 3.97632 4.12247 4.17198 4.21268 4.25777 4.31418 4.34995 4.37488 4.43357 4.52780 4.55399 4.61194 4.66377 4.68848 4.71835 4.75480 4.83016 4.86982 4.89769 5.02323 5.05725 5.18899 5.24342 5.29595 5.47745 5.50820 5.60387 5.64111 5.69090 5.78151 5.81138 6.16659 6.20550 6.27393 6.65769 6.73476 7.27247 7.39473 8.88057 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003348 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.087343 B = 8361.195574 C = 9641.317055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.060 3.940 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.227 3.773 7 C -0.537 4.537 8 H 0.027 0.973 9 C 0.019 3.981 10 N -0.944 5.944 11 Si 0.940 3.060 12 H -0.259 1.259 13 H -0.284 1.284 14 H -0.244 1.244 15 C 0.536 3.464 16 O -0.582 6.582 17 C -0.233 4.233 18 C -0.056 4.056 19 C -0.096 4.096 20 C -0.074 4.074 21 C -0.089 4.089 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.140 4.140 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.268 0.732 37 H 0.131 0.869 38 H 0.157 0.843 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 14.266 -8.956 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.018 4.018 4 C -0.008 4.008 5 N -0.317 5.317 6 C 0.105 3.895 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.180 4.180 10 N -0.583 5.583 11 Si 0.762 3.238 12 H -0.183 1.183 13 H -0.210 1.210 14 H -0.167 1.167 15 C 0.329 3.671 16 O -0.467 6.467 17 C -0.253 4.253 18 C -0.075 4.075 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.089 4.089 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.159 4.159 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.174 0.826 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.459 14.535 -8.843 18.577 hybrid contribution -0.005 -0.874 0.446 0.981 sum -7.464 13.662 -8.397 17.688 Atomic orbital electron populations 1.22897 0.79826 1.03523 1.00690 1.87954 1.21294 1.28242 1.95514 1.22887 0.93108 0.84790 1.01006 1.21477 0.93179 0.99299 0.86842 1.47818 1.64219 1.08284 1.11329 1.19558 0.95224 0.76926 0.97823 1.21557 0.97086 0.92873 1.46048 0.95465 1.25762 0.97058 1.00735 0.94424 1.70059 1.20630 1.18100 1.49561 0.85823 0.80406 0.78074 0.79469 1.18307 1.20974 1.16715 1.18995 0.77134 0.86049 0.84926 1.90599 1.56373 1.14572 1.85147 1.22810 1.07744 1.01108 0.93684 1.23950 0.89808 0.95613 0.98135 1.21007 0.96819 0.93072 1.02377 1.20598 0.96929 0.91741 1.01837 1.20047 0.97265 0.96159 0.95419 1.21325 1.00278 0.93010 0.99843 1.21492 0.98139 0.96404 0.98179 1.21459 0.98307 1.00222 0.95203 1.21397 1.00418 0.92830 1.00161 1.21265 0.99593 0.97072 0.97924 0.88934 0.92543 0.93843 0.90061 0.93836 0.90485 0.89238 0.93698 0.94166 0.92317 0.85137 0.82575 0.90409 0.90896 0.91910 0.88693 0.84316 0.83612 0.83898 0.84947 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -13.54 9.53 -148.98 -1.42 -14.96 16 3 C 0.06 1.85 6.28 71.98 0.45 2.30 16 4 C 0.12 4.34 5.81 86.38 0.50 4.84 16 5 N -0.59 -25.36 2.42 -830.44 -2.01 -27.37 16 6 C 0.23 10.54 3.81 85.63 0.33 10.87 16 7 C -0.54 -30.05 9.94 25.60 0.25 -29.80 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.02 1.05 5.47 84.65 0.46 1.51 16 10 N -0.94 -57.50 13.96 21.45 0.30 -57.20 16 11 Si 0.94 41.77 27.47 68.60 1.88 43.66 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 15 C 0.54 22.67 7.39 86.57 0.64 23.31 16 16 O -0.58 -25.32 12.96 -4.09 -0.05 -25.37 16 17 C -0.23 -8.69 9.23 23.43 0.22 -8.48 16 18 C -0.06 -1.66 9.56 24.52 0.23 -1.42 16 19 C -0.10 -2.89 4.52 29.85 0.14 -2.76 16 20 C -0.07 -1.85 5.33 29.85 0.16 -1.69 16 21 C -0.09 -2.29 5.13 -19.87 -0.10 -2.39 16 22 C -0.13 -2.73 9.70 22.27 0.22 -2.52 16 23 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 24 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 25 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 26 C -0.14 -3.82 9.70 22.27 0.22 -3.61 16 27 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 3.01 8.07 -2.38 -0.02 2.99 16 33 H 0.09 3.30 7.42 -2.39 -0.02 3.28 16 34 H 0.05 2.11 6.18 -2.39 -0.01 2.09 16 35 H 0.04 1.78 5.44 -2.38 -0.01 1.77 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.13 4.94 6.16 -2.91 -0.02 4.92 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 2.79 5.34 -2.39 -0.01 2.78 16 41 H 0.06 1.69 8.09 -2.39 -0.02 1.67 16 42 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 43 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.01 388.46 5.21 -65.80 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.88 Total: 30.78 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.63 Total: -15.34 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.71 Total: -84.57 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.47 Total: -40.34 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Total: -71.01 5.21 -65.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865158496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.445 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds