Wall clock time and date at job start Tue Mar 31 2020 12:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35908 * 116.99951 * 2 1 4 4 C 1.38727 * 120.05557 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94356 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.05378 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94313 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.50442 * 340.08518 * 7 6 5 9 9 C 1.53094 * 109.50886 * 100.21818 * 7 6 5 10 10 O 1.43011 * 109.25632 * 176.78589 * 9 7 6 11 11 C 1.43012 * 113.74009 * 301.32365 * 10 9 7 12 12 C 1.53099 * 109.25586 * 58.67357 * 11 10 9 13 13 N 1.47012 * 109.25669 * 303.15186 * 12 11 10 14 14 C 1.46901 * 110.99869 * 182.39151 * 13 12 11 15 15 C 1.53003 * 109.47076 * 46.00707 * 14 13 12 16 16 C 1.50698 * 115.54873 * 292.02657 * 15 14 13 17 17 H 1.08002 * 119.99537 * 114.64132 * 16 15 14 18 18 C 1.37873 * 120.00240 * 294.63889 * 16 15 14 19 19 N 1.31509 * 120.00017 * 162.93449 * 18 16 15 20 20 Si 1.86804 * 119.99895 * 342.93416 * 18 16 15 21 21 H 1.48496 * 109.47157 * 84.54537 * 20 18 16 22 22 H 1.48507 * 109.46881 * 204.54324 * 20 18 16 23 23 H 1.48500 * 109.46963 * 324.54387 * 20 18 16 24 24 C 1.53008 * 117.49694 * 146.35590 * 15 14 13 25 25 C 1.52996 * 117.49735 * 77.70077 * 15 14 13 26 26 C 1.38263 * 120.11359 * 0.27438 * 6 5 4 27 27 C 1.38148 * 120.05793 * 359.44895 * 26 6 5 28 28 H 1.09000 * 109.46647 * 299.99834 * 1 2 3 29 29 H 1.08996 * 109.46694 * 59.99668 * 1 2 3 30 30 H 1.08996 * 109.46630 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.02898 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.96872 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.50226 * 296.71587 * 9 7 6 34 34 H 1.08996 * 109.50961 * 56.84977 * 9 7 6 35 35 H 1.08999 * 109.50991 * 298.74226 * 11 10 9 36 36 H 1.08995 * 109.54410 * 178.63101 * 11 10 9 37 37 H 1.08996 * 109.50746 * 183.21465 * 12 11 10 38 38 H 1.09000 * 109.54049 * 63.10893 * 12 11 10 39 39 H 1.09004 * 109.47131 * 166.00775 * 14 13 12 40 40 H 1.08999 * 109.47502 * 286.00774 * 14 13 12 41 41 H 0.97003 * 120.00319 * 180.02562 * 19 18 16 42 42 H 1.08994 * 117.49665 * 0.02562 * 24 15 14 43 43 H 1.09001 * 117.49615 * 145.01759 * 24 15 14 44 44 H 1.09005 * 117.49860 * 214.97761 * 25 15 14 45 45 H 1.09003 * 117.50287 * 359.97438 * 25 15 14 46 46 H 1.08003 * 119.97437 * 179.70196 * 26 6 5 47 47 H 1.07990 * 120.03126 * 180.27424 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5171 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0017 8 1 5.0121 4.9046 0.3480 9 6 3.9895 5.5894 -1.4223 10 8 4.5723 6.8953 -1.4044 11 6 3.8931 7.8173 -0.5479 12 6 3.8885 7.2691 0.8816 13 7 3.2633 5.9386 0.8886 14 6 3.1876 5.3997 2.2532 15 6 2.6654 6.4817 3.2005 16 6 3.5916 7.6484 3.4283 17 1 3.3104 8.6350 3.0908 18 6 4.7980 7.4563 4.0676 19 7 5.7427 8.3666 3.9765 20 14 5.0905 5.9029 5.0631 21 1 5.5466 4.8153 4.1608 22 1 6.1306 6.1623 6.0909 23 1 3.8270 5.4965 5.7290 24 6 1.7938 6.0318 4.3749 25 6 1.1619 6.7650 3.1890 26 6 1.9211 3.6048 0.0052 27 6 1.2915 2.3752 0.0000 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 4.0209 0.3800 0.0005 32 1 5.1345 2.5751 0.0000 33 1 4.5730 4.9393 -2.0742 34 1 2.9660 5.6527 -1.7917 35 1 2.8667 7.9453 -0.8918 36 1 4.4060 8.7788 -0.5673 37 1 3.3226 7.9406 1.5272 38 1 4.9130 7.1918 1.2457 39 1 2.5110 4.5452 2.2693 40 1 4.1799 5.0835 2.5746 41 1 6.5916 8.2313 4.4260 42 1 1.5928 4.9650 4.4727 43 1 1.8901 6.5800 5.3121 44 1 0.8427 7.7953 3.3466 45 1 0.5448 6.1809 2.5063 46 1 1.3342 4.5114 0.0096 47 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879738115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:54 Heat of formation + Delta-G solvation = -7.742718 kcal Electronic energy + Delta-G solvation = -28140.994333 eV Core-core repulsion = 24483.738864 eV Total energy + Delta-G solvation = -3657.255470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31908 -39.28336 -37.32331 -37.07746 -34.31793 -32.32407 -31.66079 -30.99117 -28.94224 -27.89008 -27.07259 -26.10165 -23.61858 -23.47092 -22.61920 -21.56878 -21.05329 -19.54640 -18.74892 -18.15121 -16.82860 -16.26463 -15.91285 -15.77810 -15.53453 -15.12346 -14.98051 -14.44626 -14.38259 -14.03640 -13.71937 -13.57085 -13.30291 -13.18050 -12.91156 -12.70436 -12.51949 -12.32249 -12.01901 -11.73217 -11.45724 -11.22568 -11.01008 -10.87847 -10.75749 -10.60412 -10.56628 -10.37260 -10.14607 -9.86564 -9.46742 -9.17631 -9.06274 -8.88606 -8.66409 -8.33376 -7.95594 -7.53140 -6.21297 -4.10748 1.42588 1.50841 3.20934 3.24904 3.35697 3.43586 3.82263 4.28659 4.38442 4.42133 4.81337 4.91434 4.95211 4.99153 5.03763 5.06925 5.27073 5.28598 5.38753 5.50173 5.52936 5.55298 5.66907 5.74429 5.83731 5.92738 5.98472 6.06850 6.11610 6.15199 6.21288 6.31037 6.35797 6.42411 6.46105 6.55460 6.57213 6.77419 6.79084 6.82280 6.91007 7.09004 7.15948 7.30668 7.37860 7.61316 7.70353 7.82142 7.91145 8.39556 8.79055 9.44765 10.89175 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.005145 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.737397 B = 5440.647149 C = 6367.813056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.119 3.881 4 C -0.155 4.155 5 C -0.077 4.077 6 C -0.105 4.105 7 C 0.085 3.915 8 H 0.051 0.949 9 C 0.081 3.919 10 O -0.392 6.392 11 C 0.057 3.943 12 C 0.021 3.979 13 N -0.517 5.517 14 C 0.093 3.907 15 C -0.002 4.002 16 C -0.487 4.487 17 H 0.081 0.919 18 C 0.084 3.916 19 N -0.884 5.884 20 Si 0.860 3.140 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.253 1.253 24 C -0.197 4.197 25 C -0.170 4.170 26 C -0.048 4.048 27 C -0.212 4.212 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.265 0.735 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.136 0.864 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 -11.663 -9.319 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.074 3.926 4 C -0.173 4.173 5 C -0.095 4.095 6 C -0.106 4.106 7 C -0.024 4.024 8 H 0.069 0.931 9 C 0.004 3.996 10 O -0.311 6.311 11 C -0.020 4.020 12 C -0.106 4.106 13 N -0.242 5.242 14 C -0.035 4.035 15 C -0.003 4.003 16 C -0.523 4.523 17 H 0.099 0.901 18 C -0.120 4.120 19 N -0.520 5.520 20 Si 0.688 3.312 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.176 1.176 24 C -0.235 4.235 25 C -0.208 4.208 26 C -0.066 4.066 27 C -0.230 4.230 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.154 0.846 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.144 -11.671 -9.544 17.135 hybrid contribution 0.681 -0.994 1.249 1.735 sum -7.463 -12.665 -8.295 16.879 Atomic orbital electron populations 1.23013 0.78660 1.03576 1.01414 1.86038 1.21195 1.27302 1.89033 1.19023 0.92337 0.83992 0.97268 1.20298 0.91296 0.98320 1.07432 1.20877 0.99805 0.91077 0.97774 1.19675 0.93889 0.94078 1.02957 1.21190 0.95740 0.89975 0.95497 0.93107 1.22521 0.98358 0.84380 0.94383 1.87922 1.55825 1.20714 1.66625 1.22969 0.96245 0.92311 0.90449 1.23429 1.00825 0.91084 0.95254 1.62325 1.50513 1.02450 1.08889 1.21813 0.98665 0.95895 0.87077 1.19436 0.90027 0.96326 0.94481 1.20136 1.00659 0.93304 1.38210 0.90115 1.24823 0.95297 0.96040 0.95859 1.69955 1.04433 1.35808 1.41767 0.87137 0.78671 0.84381 0.81054 1.20544 1.22040 1.17642 1.23045 1.08341 0.97868 0.94279 1.22663 0.97348 0.99853 1.00890 1.20907 0.94123 0.97082 0.94530 1.21244 0.99816 0.92383 1.09586 0.92653 0.92743 0.88541 0.85551 0.85594 0.89477 0.92807 0.93422 0.89069 0.84519 0.93181 0.92900 0.95346 0.92535 0.91673 0.89714 0.90131 0.90904 0.84646 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.97 10.50 -19.45 -0.20 -4.17 16 3 C 0.12 1.59 6.69 -39.22 -0.26 1.33 16 4 C -0.15 -2.08 9.99 -39.43 -0.39 -2.47 16 5 C -0.08 -1.08 9.66 -39.61 -0.38 -1.46 16 6 C -0.11 -1.60 3.95 -104.60 -0.41 -2.02 16 7 C 0.09 1.44 2.15 -68.75 -0.15 1.30 16 8 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 9 C 0.08 1.26 6.27 37.21 0.23 1.49 16 10 O -0.39 -7.01 10.83 -35.23 -0.38 -7.39 16 11 C 0.06 1.00 7.01 37.21 0.26 1.26 16 12 C 0.02 0.42 4.19 -3.71 -0.02 0.41 16 13 N -0.52 -9.74 4.00 -227.72 -0.91 -10.65 16 14 C 0.09 1.93 4.34 -3.82 -0.02 1.91 16 15 C 0.00 -0.03 0.51 -155.66 -0.08 -0.11 16 16 C -0.49 -12.27 5.87 -34.44 -0.20 -12.48 16 17 H 0.08 2.21 7.18 -52.49 -0.38 1.83 16 18 C 0.08 2.23 5.30 -17.82 -0.09 2.14 16 19 N -0.88 -25.14 13.96 55.43 0.77 -24.37 16 20 Si 0.86 20.94 25.61 -169.99 -4.35 16.59 16 21 H -0.28 -6.84 6.64 56.52 0.38 -6.46 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.25 -5.90 5.80 56.52 0.33 -5.57 16 24 C -0.20 -4.07 7.75 -26.69 -0.21 -4.27 16 25 C -0.17 -3.31 9.96 -26.70 -0.27 -3.58 16 26 C -0.05 -0.69 8.12 -39.61 -0.32 -1.01 16 27 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.13 1.60 8.03 -52.49 -0.42 1.18 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.14 3.07 4.34 -51.93 -0.23 2.84 16 38 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 39 H 0.05 1.05 6.50 -51.93 -0.34 0.71 16 40 H 0.03 0.66 5.69 -51.93 -0.30 0.37 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.82 7.98 -51.93 -0.41 1.40 16 44 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.14 1.98 7.71 -52.48 -0.40 1.57 16 47 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -28.26 361.39 -8.76 -37.02 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.46 Total: 6.96 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.67 Total: -19.44 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.14 Total: -35.02 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.59 Total: -11.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.35 Total: 16.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.26 -8.76 -37.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879738115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.280 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds