Wall clock time and date at job start Tue Mar 31 2020 12:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35908 * 116.99951 * 2 1 4 4 C 1.38727 * 120.05557 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94356 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.05378 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94313 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.50442 * 340.08518 * 7 6 5 9 9 C 1.53094 * 109.50886 * 100.21818 * 7 6 5 10 10 O 1.43011 * 109.25632 * 176.78589 * 9 7 6 11 11 C 1.43012 * 113.74009 * 301.32365 * 10 9 7 12 12 C 1.53099 * 109.25586 * 58.67357 * 11 10 9 13 13 N 1.47012 * 109.25669 * 303.15186 * 12 11 10 14 14 C 1.46901 * 110.99869 * 182.39151 * 13 12 11 15 15 C 1.53003 * 109.47076 * 46.00707 * 14 13 12 16 16 C 1.50698 * 115.54873 * 292.02657 * 15 14 13 17 17 H 1.08002 * 119.99537 * 114.64132 * 16 15 14 18 18 C 1.37873 * 120.00240 * 294.63889 * 16 15 14 19 19 N 1.31509 * 120.00017 * 162.93449 * 18 16 15 20 20 Si 1.86804 * 119.99895 * 342.93416 * 18 16 15 21 21 H 1.48496 * 109.47157 * 84.54537 * 20 18 16 22 22 H 1.48507 * 109.46881 * 204.54324 * 20 18 16 23 23 H 1.48500 * 109.46963 * 324.54387 * 20 18 16 24 24 C 1.53008 * 117.49694 * 146.35590 * 15 14 13 25 25 C 1.52996 * 117.49735 * 77.70077 * 15 14 13 26 26 C 1.38263 * 120.11359 * 0.27438 * 6 5 4 27 27 C 1.38148 * 120.05793 * 359.44895 * 26 6 5 28 28 H 1.09000 * 109.46647 * 299.99834 * 1 2 3 29 29 H 1.08996 * 109.46694 * 59.99668 * 1 2 3 30 30 H 1.08996 * 109.46630 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.02898 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.96872 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.50226 * 296.71587 * 9 7 6 34 34 H 1.08996 * 109.50961 * 56.84977 * 9 7 6 35 35 H 1.08999 * 109.50991 * 298.74226 * 11 10 9 36 36 H 1.08995 * 109.54410 * 178.63101 * 11 10 9 37 37 H 1.08996 * 109.50746 * 183.21465 * 12 11 10 38 38 H 1.09000 * 109.54049 * 63.10893 * 12 11 10 39 39 H 1.09004 * 109.47131 * 166.00775 * 14 13 12 40 40 H 1.08999 * 109.47502 * 286.00774 * 14 13 12 41 41 H 0.97003 * 120.00319 * 180.02562 * 19 18 16 42 42 H 1.08994 * 117.49665 * 0.02562 * 24 15 14 43 43 H 1.09001 * 117.49615 * 145.01759 * 24 15 14 44 44 H 1.09005 * 117.49860 * 214.97761 * 25 15 14 45 45 H 1.09003 * 117.50287 * 359.97438 * 25 15 14 46 46 H 1.08003 * 119.97437 * 179.70196 * 26 6 5 47 47 H 1.07990 * 120.03126 * 180.27424 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5171 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0017 8 1 5.0121 4.9046 0.3480 9 6 3.9895 5.5894 -1.4223 10 8 4.5723 6.8953 -1.4044 11 6 3.8931 7.8173 -0.5479 12 6 3.8885 7.2691 0.8816 13 7 3.2633 5.9386 0.8886 14 6 3.1876 5.3997 2.2532 15 6 2.6654 6.4817 3.2005 16 6 3.5916 7.6484 3.4283 17 1 3.3104 8.6350 3.0908 18 6 4.7980 7.4563 4.0676 19 7 5.7427 8.3666 3.9765 20 14 5.0905 5.9029 5.0631 21 1 5.5466 4.8153 4.1608 22 1 6.1306 6.1623 6.0909 23 1 3.8270 5.4965 5.7290 24 6 1.7938 6.0318 4.3749 25 6 1.1619 6.7650 3.1890 26 6 1.9211 3.6048 0.0052 27 6 1.2915 2.3752 0.0000 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 4.0209 0.3800 0.0005 32 1 5.1345 2.5751 0.0000 33 1 4.5730 4.9393 -2.0742 34 1 2.9660 5.6527 -1.7917 35 1 2.8667 7.9453 -0.8918 36 1 4.4060 8.7788 -0.5673 37 1 3.3226 7.9406 1.5272 38 1 4.9130 7.1918 1.2457 39 1 2.5110 4.5452 2.2693 40 1 4.1799 5.0835 2.5746 41 1 6.5916 8.2313 4.4260 42 1 1.5928 4.9650 4.4727 43 1 1.8901 6.5800 5.3121 44 1 0.8427 7.7953 3.3466 45 1 0.5448 6.1809 2.5063 46 1 1.3342 4.5114 0.0096 47 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879738115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:53 Heat of formation + Delta-G solvation = -25.078436 kcal Electronic energy + Delta-G solvation = -28141.746066 eV Core-core repulsion = 24483.738864 eV Total energy + Delta-G solvation = -3658.007203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47098 -40.52526 -38.71522 -38.37916 -35.77966 -34.31485 -33.02961 -32.01208 -30.16310 -29.26818 -28.02444 -27.93741 -25.11566 -24.86421 -23.69966 -23.13525 -22.30488 -21.03184 -20.49068 -19.08922 -18.60673 -17.31345 -17.28854 -16.99780 -16.87575 -16.59296 -16.33029 -15.80036 -15.64662 -15.48547 -15.20642 -14.94456 -14.70959 -14.51929 -14.42046 -14.07032 -13.86235 -13.66265 -13.30744 -12.97359 -12.89458 -12.76775 -12.58676 -12.26283 -12.21883 -12.07586 -11.90626 -11.79464 -11.65653 -11.39064 -11.30076 -10.88310 -10.65727 -10.41384 -10.22152 -9.92577 -9.17173 -9.02832 -8.30177 -6.18426 0.38717 0.44809 1.27681 1.34905 1.44965 2.35953 2.39582 2.71828 2.87133 2.99974 3.02375 3.50785 3.83505 3.89785 3.97346 3.99567 4.19702 4.21150 4.32906 4.35286 4.39625 4.42506 4.45494 4.48786 4.54898 4.56772 4.58400 4.69788 4.73592 4.76358 4.82071 4.88576 4.91883 4.96711 5.11764 5.15909 5.22023 5.30053 5.39124 5.42163 5.53814 5.58580 5.71010 5.74694 5.79638 6.15578 6.20821 6.32858 6.35388 6.47054 6.74602 7.37636 8.83641 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.005145 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.737397 B = 5440.647149 C = 6367.813056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.118 3.882 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.121 4.121 7 C 0.088 3.912 8 H 0.024 0.976 9 C 0.081 3.919 10 O -0.405 6.405 11 C 0.065 3.935 12 C 0.033 3.967 13 N -0.504 5.504 14 C 0.105 3.895 15 C -0.029 4.029 16 C -0.464 4.464 17 H 0.050 0.950 18 C 0.037 3.963 19 N -0.930 5.930 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.301 1.301 23 H -0.231 1.231 24 C -0.193 4.193 25 C -0.146 4.146 26 C -0.053 4.053 27 C -0.207 4.207 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.002 0.998 39 H 0.070 0.930 40 H -0.003 1.003 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -14.107 -10.324 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.021 4.021 8 H 0.042 0.958 9 C 0.004 3.996 10 O -0.324 6.324 11 C -0.012 4.012 12 C -0.094 4.094 13 N -0.228 5.228 14 C -0.022 4.022 15 C -0.030 4.030 16 C -0.501 4.501 17 H 0.067 0.933 18 C -0.162 4.162 19 N -0.569 5.569 20 Si 0.730 3.270 21 H -0.211 1.211 22 H -0.228 1.228 23 H -0.154 1.154 24 C -0.231 4.231 25 C -0.183 4.183 26 C -0.071 4.071 27 C -0.226 4.226 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.020 0.980 39 H 0.088 0.912 40 H 0.015 0.985 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.153 0.847 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.937 -14.136 -10.550 20.754 hybrid contribution 1.450 -0.290 1.490 2.100 sum -9.486 -14.426 -9.059 19.498 Atomic orbital electron populations 1.23333 0.76524 1.05501 1.02244 1.86035 1.23422 1.26712 1.88705 1.19174 0.92484 0.84683 0.96431 1.20491 0.91904 0.98458 1.07122 1.20969 1.00197 0.91161 0.97803 1.19524 0.94474 0.93068 1.05063 1.21193 0.94314 0.90945 0.95649 0.95829 1.22707 0.99627 0.83460 0.93762 1.87909 1.56536 1.21752 1.66236 1.22861 0.97571 0.92275 0.88454 1.23080 0.97500 0.91966 0.96878 1.62374 1.50150 1.02030 1.08274 1.21639 0.97151 0.95855 0.87605 1.19375 0.91122 0.96018 0.96509 1.20233 1.00747 0.93315 1.35847 0.93251 1.25387 0.95508 0.98131 0.97186 1.70069 1.05004 1.37963 1.43821 0.86446 0.79127 0.81687 0.79744 1.21082 1.22822 1.15393 1.23053 1.07308 0.99125 0.93650 1.22695 0.95243 1.00137 1.00191 1.20918 0.93544 0.97744 0.94879 1.21446 1.01075 0.91535 1.08540 0.92076 0.91544 0.86283 0.84250 0.85145 0.87343 0.91192 0.91207 0.88779 0.86753 0.98000 0.91165 0.98499 0.93001 0.89617 0.90719 0.90279 0.88257 0.84675 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.19 10.50 -92.51 -0.97 -8.17 16 3 C 0.12 2.81 6.69 22.51 0.15 2.96 16 4 C -0.16 -3.99 9.99 22.37 0.22 -3.76 16 5 C -0.08 -2.22 9.66 22.25 0.22 -2.00 16 6 C -0.12 -3.48 3.95 -19.85 -0.08 -3.56 16 7 C 0.09 2.95 2.15 44.18 0.09 3.04 16 8 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 9 C 0.08 2.40 6.27 72.01 0.45 2.85 16 10 O -0.41 -14.22 10.83 -148.98 -1.61 -15.83 16 11 C 0.06 2.28 7.01 72.02 0.50 2.78 16 12 C 0.03 1.40 4.19 86.31 0.36 1.77 16 13 N -0.50 -18.79 4.00 -874.38 -3.50 -22.29 16 14 C 0.11 4.29 4.34 86.30 0.37 4.67 16 15 C -0.03 -1.25 0.51 -52.93 -0.03 -1.28 16 16 C -0.46 -24.09 5.87 25.60 0.15 -23.94 16 17 H 0.05 2.83 7.18 -2.91 -0.02 2.81 16 18 C 0.04 2.04 5.30 84.65 0.45 2.49 16 19 N -0.93 -55.59 13.96 21.44 0.30 -55.29 16 20 Si 0.90 43.93 25.61 68.60 1.76 45.69 16 21 H -0.28 -13.97 6.64 99.48 0.66 -13.31 16 22 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 23 H -0.23 -10.31 5.80 99.48 0.58 -9.74 16 24 C -0.19 -7.50 7.75 30.62 0.24 -7.26 16 25 C -0.15 -5.29 9.96 30.62 0.30 -4.98 16 26 C -0.05 -1.37 8.12 22.25 0.18 -1.19 16 27 C -0.21 -4.68 9.04 22.37 0.20 -4.48 16 28 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.13 3.25 8.03 -2.91 -0.02 3.23 16 33 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.11 5.32 4.34 -2.39 -0.01 5.31 16 38 H 0.00 0.08 7.80 -2.39 -0.02 0.06 16 39 H 0.07 2.62 6.50 -2.38 -0.02 2.61 16 40 H 0.00 -0.15 5.69 -2.39 -0.01 -0.16 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 3.06 7.98 -2.39 -0.02 3.04 16 44 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 45 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.14 3.51 7.71 -2.91 -0.02 3.48 16 47 H 0.15 2.55 6.30 -2.92 -0.02 2.54 16 Total: -1.00 -63.03 361.39 1.66 -61.38 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.78 Total: 25.07 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 4.91 Total: -30.55 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -3.20 Total: -77.59 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -2.58 Total: -24.00 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.76 Total: 45.69 kcal Total: -63.03 1.66 -61.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879738115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.298 kcal (2) G-P(sol) polarization free energy of solvation -63.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds