Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00485 * 2 1 4 4 C 1.50699 * 108.87265 * 62.89301 * 3 2 1 5 5 O 1.21282 * 120.00252 * 202.50972 * 4 3 2 6 6 N 1.34781 * 120.00059 * 22.51377 * 4 3 2 7 7 C 1.39234 * 120.00182 * 172.88016 * 6 4 3 8 8 C 1.39473 * 119.83483 * 213.65482 * 7 6 4 9 9 C 1.36382 * 120.17045 * 180.02562 * 8 7 6 10 10 C 1.40867 * 119.82404 * 359.97438 * 9 8 7 11 11 C 1.41158 * 120.15992 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00173 * 337.92436 * 11 10 9 13 13 C 1.39908 * 119.99687 * 157.92374 * 11 10 9 14 14 N 1.30872 * 120.00383 * 341.83981 * 13 11 10 15 15 Si 1.86799 * 119.99679 * 161.83776 * 13 11 10 16 16 H 1.48489 * 109.47234 * 90.00287 * 15 13 11 17 17 H 1.48504 * 109.47079 * 210.00323 * 15 13 11 18 18 H 1.48500 * 109.47101 * 330.00140 * 15 13 11 19 19 C 1.40860 * 119.67791 * 0.27774 * 10 9 8 20 20 C 1.36386 * 119.82582 * 359.43844 * 19 10 9 21 21 C 1.54241 * 108.82414 * 181.45716 * 3 2 1 22 22 C 1.50472 * 108.52052 * 40.71597 * 21 3 2 23 23 C 1.54068 * 112.49838 * 94.15491 * 22 21 3 24 24 C 1.54069 * 112.81723 * 318.27875 * 23 22 21 25 25 C 1.50475 * 112.49476 * 318.28682 * 24 23 22 26 26 C 1.45548 * 108.89188 * 304.29470 * 3 2 1 27 27 H 1.08999 * 109.46776 * 68.31206 * 1 2 3 28 28 H 1.08992 * 109.47326 * 188.31697 * 1 2 3 29 29 H 1.08998 * 109.47189 * 308.31894 * 1 2 3 30 30 H 0.96996 * 119.99864 * 352.88670 * 6 4 3 31 31 H 1.08003 * 119.92094 * 0.02562 * 8 7 6 32 32 H 1.08000 * 120.08881 * 179.97438 * 9 8 7 33 33 H 0.97001 * 119.99955 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.09077 * 179.70286 * 19 10 9 35 35 H 1.07994 * 119.91520 * 180.25287 * 20 19 10 36 36 H 1.08997 * 109.62570 * 160.42724 * 21 3 2 37 37 H 1.08999 * 109.62608 * 281.01019 * 21 3 2 38 38 H 1.08993 * 108.88031 * 333.37430 * 22 21 3 39 39 H 1.09003 * 108.87785 * 214.92749 * 22 21 3 40 40 H 1.09003 * 108.81737 * 197.41935 * 23 22 21 41 41 H 1.09004 * 108.73006 * 79.08203 * 23 22 21 42 42 H 1.08995 * 108.87954 * 197.51294 * 24 23 22 43 43 H 1.08997 * 108.87586 * 79.06038 * 24 23 22 44 44 H 1.09001 * 109.62985 * 334.44739 * 25 24 23 45 45 H 1.08995 * 109.63239 * 213.85978 * 25 24 23 46 46 H 1.09001 * 108.89707 * 62.03075 * 26 3 2 47 47 H 1.09001 * 108.89093 * 180.62057 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6151 2.0150 1.2693 5 8 1.6332 3.2268 1.3176 6 7 1.2415 1.3031 2.3511 7 6 1.0196 1.9469 3.5656 8 6 1.3234 1.2964 4.7614 9 6 1.1084 1.9204 5.9549 10 6 0.5785 3.2254 5.9777 11 6 0.3536 3.8781 7.2090 12 1 0.2389 3.2996 8.1137 13 6 0.2792 5.2743 7.2572 14 7 0.7581 5.9896 6.2714 15 14 -0.5037 6.1176 8.7287 16 1 0.5346 6.3855 9.7559 17 1 -1.1152 7.4001 8.2967 18 1 -1.5530 5.2377 9.3031 19 6 0.2692 3.8738 4.7661 20 6 0.4951 3.2393 3.5802 21 6 3.5460 1.1663 -0.0371 22 6 3.9025 0.0559 -0.9879 23 6 4.2010 0.5699 -2.4093 24 6 3.2179 1.6640 -2.8678 25 6 1.7959 1.3585 -2.4819 26 6 1.4932 2.0516 -1.1377 27 1 -0.3633 0.3798 -0.9549 28 1 -0.3633 -1.0168 0.1486 29 1 -0.3633 0.6372 0.8063 30 1 1.1273 0.3423 2.2836 31 1 1.7301 0.2961 4.7423 32 1 1.3437 1.4153 6.8800 33 1 0.7062 6.9577 6.3047 34 1 -0.1419 4.8725 4.7760 35 1 0.2624 3.7366 2.6503 36 1 3.9899 2.1002 -0.3818 37 1 3.9162 0.9276 0.9599 38 1 3.0721 -0.6485 -1.0348 39 1 4.7824 -0.4640 -0.6090 40 1 4.1445 -0.2674 -3.1050 41 1 5.2126 0.9753 -2.4297 42 1 3.2764 1.7589 -3.9520 43 1 3.5099 2.6121 -2.4163 44 1 1.6687 0.2812 -2.3752 45 1 1.1193 1.7357 -3.2487 46 1 0.4137 2.1565 -1.0298 47 1 1.9451 3.0435 -1.1440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929404708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = -65.445887 kcal Electronic energy + Delta-G solvation = -27457.127504 eV Core-core repulsion = 23797.369838 eV Total energy + Delta-G solvation = -3659.757667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14537 -38.65353 -37.03319 -36.43283 -34.45771 -32.91622 -32.34179 -31.61745 -29.47804 -28.99124 -26.90443 -25.84120 -24.93619 -24.33473 -21.87507 -21.23176 -20.23561 -19.47629 -19.35752 -17.71506 -17.31748 -16.79896 -16.05898 -15.80785 -15.32821 -15.12288 -14.70457 -14.50785 -14.00255 -13.89163 -13.47626 -13.30822 -13.13420 -12.97716 -12.74135 -12.68451 -12.20435 -12.10386 -11.94304 -11.82320 -11.46696 -11.25106 -11.14655 -11.07983 -10.98658 -10.87070 -10.66516 -10.52755 -10.47069 -10.34757 -10.05112 -9.93768 -9.72890 -9.42072 -8.90989 -8.54843 -7.50726 -7.02066 -6.74497 -4.28469 2.56747 2.96420 3.06726 3.11269 3.12614 3.29195 3.46264 3.79093 3.92492 4.51492 4.63530 4.66592 4.71075 4.97482 5.05135 5.09564 5.15775 5.19897 5.28023 5.33141 5.43812 5.58639 5.65727 5.72320 5.74159 5.77852 5.89969 5.98484 6.05458 6.06596 6.12106 6.13095 6.17147 6.28350 6.43134 6.46090 6.81334 6.90098 7.03128 7.07081 7.18253 7.31227 7.62042 7.69923 7.99082 8.06436 8.23216 8.33868 8.64371 8.76749 8.88895 9.02113 10.16964 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002934 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.509880 B = 9542.059400 C = 9807.528445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.372 6.372 3 C 0.119 3.881 4 C 0.475 3.525 5 O -0.525 6.525 6 N -0.643 5.643 7 C -0.014 4.014 8 C -0.103 4.103 9 C -0.218 4.218 10 C 0.105 3.895 11 C -0.457 4.457 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.786 5.786 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.162 4.162 20 C -0.088 4.088 21 C -0.093 4.093 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.142 4.142 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.281 0.719 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -9.935 -15.374 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.292 6.292 3 C 0.076 3.924 4 C 0.260 3.740 5 O -0.401 6.401 6 N -0.286 5.286 7 C -0.106 4.106 8 C -0.123 4.123 9 C -0.238 4.238 10 C 0.102 3.898 11 C -0.486 4.486 12 H 0.096 0.904 13 C -0.145 4.145 14 N -0.411 5.411 15 Si 0.732 3.268 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.182 4.182 20 C -0.108 4.108 21 C -0.131 4.131 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.148 4.148 26 C -0.180 4.180 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.234 0.766 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.171 -8.988 -15.419 17.979 hybrid contribution -0.481 0.265 0.729 0.912 sum 1.690 -8.723 -14.690 17.168 Atomic orbital electron populations 1.22994 0.81215 1.03142 1.01140 1.87922 1.19635 1.26797 1.94806 1.20455 0.96137 0.83175 0.92612 1.21233 0.78362 0.88396 0.85988 1.90695 1.52496 1.13583 1.83371 1.43073 1.65892 1.10747 1.08893 1.17263 1.14275 0.95921 0.83155 1.20046 1.01952 0.98233 0.92038 1.20519 1.09920 0.98019 0.95330 1.17675 0.87933 0.90792 0.93401 1.19560 1.42874 0.91193 0.94939 0.90407 1.25962 0.93018 0.98023 0.97458 1.69864 1.32205 1.07709 1.31276 0.86321 0.80236 0.78869 0.81367 1.19479 1.20057 1.18435 1.21089 1.04896 1.01141 0.91039 1.20642 0.98518 0.93411 0.98240 1.21271 0.90130 1.00795 1.00911 1.21231 1.02320 0.98440 0.93832 1.21917 0.98700 0.98206 0.96456 1.21371 0.94907 0.99218 1.00381 1.21237 0.96503 1.01592 0.95474 1.21003 1.01996 1.00811 0.94227 0.93406 0.89198 0.92981 0.76642 0.89284 0.88703 0.90763 0.85946 0.87292 0.89886 0.90856 0.89649 0.92176 0.92407 0.92534 0.92437 0.91933 0.90627 0.91880 0.91486 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.38 101.05 0.95 1.07 16 2 O -0.37 -4.44 6.62 -35.23 -0.23 -4.67 16 3 C 0.12 1.60 0.62 -94.64 -0.06 1.54 16 4 C 0.47 8.62 5.35 -10.98 -0.06 8.56 16 5 O -0.52 -11.68 13.49 5.56 0.07 -11.61 16 6 N -0.64 -11.83 4.37 -9.74 -0.04 -11.87 16 7 C -0.01 -0.32 6.35 -83.57 -0.53 -0.85 16 8 C -0.10 -2.30 9.89 -39.79 -0.39 -2.69 16 9 C -0.22 -5.35 9.74 -39.26 -0.38 -5.73 16 10 C 0.10 2.83 5.60 -106.80 -0.60 2.24 16 11 C -0.46 -12.18 9.04 -37.85 -0.34 -12.52 16 12 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 13 C 0.07 1.87 5.15 -17.34 -0.09 1.79 16 14 N -0.79 -20.78 10.82 55.55 0.60 -20.18 16 15 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 C -0.16 -4.39 8.66 -39.26 -0.34 -4.73 16 20 C -0.09 -2.24 8.65 -39.78 -0.34 -2.58 16 21 C -0.09 -1.16 4.86 -27.34 -0.13 -1.29 16 22 C -0.12 -1.21 5.24 -27.44 -0.14 -1.36 16 23 C -0.12 -1.01 5.85 -25.62 -0.15 -1.16 16 24 C -0.12 -1.10 5.31 -27.43 -0.15 -1.24 16 25 C -0.11 -1.06 5.39 -27.34 -0.15 -1.21 16 26 C -0.14 -1.76 3.20 -29.60 -0.09 -1.85 16 27 H 0.05 0.45 6.71 -51.93 -0.35 0.11 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.65 6.10 -51.93 -0.32 0.34 16 30 H 0.40 6.20 7.09 -40.82 -0.29 5.91 16 31 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 34 H 0.12 3.44 6.00 -52.49 -0.31 3.13 16 35 H 0.11 2.79 6.00 -52.49 -0.32 2.47 16 36 H 0.08 1.04 6.98 -51.93 -0.36 0.67 16 37 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 38 H 0.09 0.90 5.46 -51.93 -0.28 0.62 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 44 H 0.08 0.73 6.24 -51.93 -0.32 0.40 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.85 6.52 -51.93 -0.34 0.51 16 47 H 0.09 1.19 7.09 -51.93 -0.37 0.82 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -29.68 354.49 -9.24 -38.93 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.95 Total: 12.39 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.00 Total: -22.04 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.56 Total: -32.05 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.16 Total: -16.28 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.68 -9.24 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929404708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.521 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds