Wall clock time and date at job start Tue Mar 31 2020 12:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00485 * 2 1 4 4 C 1.50699 * 108.87265 * 62.89301 * 3 2 1 5 5 O 1.21282 * 120.00252 * 202.50972 * 4 3 2 6 6 N 1.34781 * 120.00059 * 22.51377 * 4 3 2 7 7 C 1.39234 * 120.00182 * 172.88016 * 6 4 3 8 8 C 1.39473 * 119.83483 * 213.65482 * 7 6 4 9 9 C 1.36382 * 120.17045 * 180.02562 * 8 7 6 10 10 C 1.40867 * 119.82404 * 359.97438 * 9 8 7 11 11 C 1.41158 * 120.15992 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00173 * 337.92436 * 11 10 9 13 13 C 1.39908 * 119.99687 * 157.92374 * 11 10 9 14 14 N 1.30872 * 120.00383 * 341.83981 * 13 11 10 15 15 Si 1.86799 * 119.99679 * 161.83776 * 13 11 10 16 16 H 1.48489 * 109.47234 * 90.00287 * 15 13 11 17 17 H 1.48504 * 109.47079 * 210.00323 * 15 13 11 18 18 H 1.48500 * 109.47101 * 330.00140 * 15 13 11 19 19 C 1.40860 * 119.67791 * 0.27774 * 10 9 8 20 20 C 1.36386 * 119.82582 * 359.43844 * 19 10 9 21 21 C 1.54241 * 108.82414 * 181.45716 * 3 2 1 22 22 C 1.50472 * 108.52052 * 40.71597 * 21 3 2 23 23 C 1.54068 * 112.49838 * 94.15491 * 22 21 3 24 24 C 1.54069 * 112.81723 * 318.27875 * 23 22 21 25 25 C 1.50475 * 112.49476 * 318.28682 * 24 23 22 26 26 C 1.45548 * 108.89188 * 304.29470 * 3 2 1 27 27 H 1.08999 * 109.46776 * 68.31206 * 1 2 3 28 28 H 1.08992 * 109.47326 * 188.31697 * 1 2 3 29 29 H 1.08998 * 109.47189 * 308.31894 * 1 2 3 30 30 H 0.96996 * 119.99864 * 352.88670 * 6 4 3 31 31 H 1.08003 * 119.92094 * 0.02562 * 8 7 6 32 32 H 1.08000 * 120.08881 * 179.97438 * 9 8 7 33 33 H 0.97001 * 119.99955 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.09077 * 179.70286 * 19 10 9 35 35 H 1.07994 * 119.91520 * 180.25287 * 20 19 10 36 36 H 1.08997 * 109.62570 * 160.42724 * 21 3 2 37 37 H 1.08999 * 109.62608 * 281.01019 * 21 3 2 38 38 H 1.08993 * 108.88031 * 333.37430 * 22 21 3 39 39 H 1.09003 * 108.87785 * 214.92749 * 22 21 3 40 40 H 1.09003 * 108.81737 * 197.41935 * 23 22 21 41 41 H 1.09004 * 108.73006 * 79.08203 * 23 22 21 42 42 H 1.08995 * 108.87954 * 197.51294 * 24 23 22 43 43 H 1.08997 * 108.87586 * 79.06038 * 24 23 22 44 44 H 1.09001 * 109.62985 * 334.44739 * 25 24 23 45 45 H 1.08995 * 109.63239 * 213.85978 * 25 24 23 46 46 H 1.09001 * 108.89707 * 62.03075 * 26 3 2 47 47 H 1.09001 * 108.89093 * 180.62057 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6151 2.0150 1.2693 5 8 1.6332 3.2268 1.3176 6 7 1.2415 1.3031 2.3511 7 6 1.0196 1.9469 3.5656 8 6 1.3234 1.2964 4.7614 9 6 1.1084 1.9204 5.9549 10 6 0.5785 3.2254 5.9777 11 6 0.3536 3.8781 7.2090 12 1 0.2389 3.2996 8.1137 13 6 0.2792 5.2743 7.2572 14 7 0.7581 5.9896 6.2714 15 14 -0.5037 6.1176 8.7287 16 1 0.5346 6.3855 9.7559 17 1 -1.1152 7.4001 8.2967 18 1 -1.5530 5.2377 9.3031 19 6 0.2692 3.8738 4.7661 20 6 0.4951 3.2393 3.5802 21 6 3.5460 1.1663 -0.0371 22 6 3.9025 0.0559 -0.9879 23 6 4.2010 0.5699 -2.4093 24 6 3.2179 1.6640 -2.8678 25 6 1.7959 1.3585 -2.4819 26 6 1.4932 2.0516 -1.1377 27 1 -0.3633 0.3798 -0.9549 28 1 -0.3633 -1.0168 0.1486 29 1 -0.3633 0.6372 0.8063 30 1 1.1273 0.3423 2.2836 31 1 1.7301 0.2961 4.7423 32 1 1.3437 1.4153 6.8800 33 1 0.7062 6.9577 6.3047 34 1 -0.1419 4.8725 4.7760 35 1 0.2624 3.7366 2.6503 36 1 3.9899 2.1002 -0.3818 37 1 3.9162 0.9276 0.9599 38 1 3.0721 -0.6485 -1.0348 39 1 4.7824 -0.4640 -0.6090 40 1 4.1445 -0.2674 -3.1050 41 1 5.2126 0.9753 -2.4297 42 1 3.2764 1.7589 -3.9520 43 1 3.5099 2.6121 -2.4163 44 1 1.6687 0.2812 -2.3752 45 1 1.1193 1.7357 -3.2487 46 1 0.4137 2.1565 -1.0298 47 1 1.9451 3.0435 -1.1440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929404708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:19 Heat of formation + Delta-G solvation = -81.442219 kcal Electronic energy + Delta-G solvation = -27457.821157 eV Core-core repulsion = 23797.369838 eV Total energy + Delta-G solvation = -3660.451320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.38378 -40.16616 -38.76228 -37.35873 -36.21615 -34.70566 -33.23704 -32.61728 -31.43314 -30.86095 -27.78848 -27.35605 -26.03137 -25.49789 -23.45576 -23.07207 -21.73641 -20.81144 -20.14762 -19.30774 -19.07852 -18.12331 -17.36701 -17.05674 -16.84271 -16.12373 -16.12162 -15.86970 -15.69059 -15.01507 -14.75368 -14.66304 -14.42696 -14.13249 -14.02049 -13.97562 -13.78494 -13.62464 -13.36147 -13.08605 -12.83489 -12.78281 -12.72033 -12.38845 -12.26897 -12.03119 -11.91231 -11.78734 -11.62985 -11.40608 -11.30750 -11.23810 -11.13292 -10.96297 -10.64006 -10.18037 -9.48330 -8.92856 -8.64646 -6.28901 0.77187 1.11533 1.36102 1.40341 1.52314 1.67821 2.14930 2.19689 2.60648 2.73158 3.44895 3.62521 3.73600 3.81725 4.05511 4.15297 4.19762 4.31314 4.37546 4.39744 4.43699 4.45562 4.47820 4.54676 4.74063 4.83282 4.87901 4.91424 4.96941 5.01856 5.06634 5.13139 5.16273 5.23179 5.26656 5.27901 5.36049 5.37353 5.41202 5.52315 5.65203 5.66184 5.78491 5.97059 6.06407 6.08468 6.30827 6.64972 6.67990 6.89691 6.97767 7.30908 8.29378 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002934 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.509880 B = 9542.059400 C = 9807.528445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.365 6.365 3 C 0.135 3.865 4 C 0.471 3.529 5 O -0.570 6.570 6 N -0.635 5.635 7 C -0.004 4.004 8 C -0.098 4.098 9 C -0.225 4.225 10 C 0.074 3.926 11 C -0.491 4.491 12 H 0.083 0.917 13 C 0.030 3.970 14 N -0.825 5.825 15 Si 0.986 3.014 16 H -0.260 1.260 17 H -0.269 1.269 18 H -0.255 1.255 19 C -0.186 4.186 20 C -0.102 4.102 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.101 4.101 26 C -0.142 4.142 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.028 0.972 30 H 0.416 0.584 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.288 0.712 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -12.256 -16.427 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.284 6.284 3 C 0.092 3.908 4 C 0.259 3.741 5 O -0.449 6.449 6 N -0.280 5.280 7 C -0.097 4.097 8 C -0.117 4.117 9 C -0.245 4.245 10 C 0.071 3.929 11 C -0.520 4.520 12 H 0.101 0.899 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.806 3.194 16 H -0.184 1.184 17 H -0.194 1.194 18 H -0.178 1.178 19 C -0.206 4.206 20 C -0.122 4.122 21 C -0.132 4.132 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.138 4.138 26 C -0.180 4.180 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.047 0.953 30 H 0.254 0.746 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.517 -11.363 -16.498 20.190 hybrid contribution -0.569 0.910 0.938 1.426 sum 1.948 -10.453 -15.560 18.846 Atomic orbital electron populations 1.23173 0.80265 1.04525 1.01000 1.87948 1.20536 1.25295 1.94587 1.20303 0.96965 0.83572 0.89944 1.22271 0.76678 0.88064 0.87097 1.90678 1.54077 1.15909 1.84259 1.43016 1.65783 1.11519 1.07671 1.17349 1.12128 0.94999 0.85222 1.20384 1.00730 0.99737 0.90896 1.20798 1.09422 0.97335 0.96975 1.18017 0.89067 0.92265 0.93562 1.19855 1.44675 0.92362 0.95072 0.89888 1.26910 0.92750 0.98274 1.00592 1.69944 1.33278 1.08294 1.33518 0.85149 0.79282 0.77630 0.77315 1.18427 1.19354 1.17841 1.20989 1.06696 1.00813 0.92151 1.20659 0.99438 0.94888 0.97179 1.21311 0.89009 1.01748 1.01132 1.21201 1.02721 0.97253 0.94041 1.21914 0.98777 0.98613 0.95754 1.21389 0.94514 0.98757 1.01411 1.21210 0.97274 1.01580 0.93732 1.21012 1.01331 1.00120 0.95552 0.92123 0.86326 0.95294 0.74613 0.85177 0.87102 0.90177 0.88141 0.88401 0.90422 0.92052 0.89591 0.91171 0.90742 0.92080 0.90712 0.93297 0.89873 0.90519 0.92126 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.38 113.37 1.06 1.18 16 2 O -0.36 -7.84 6.62 -148.98 -0.99 -8.82 16 3 C 0.13 3.51 0.62 -13.40 -0.01 3.51 16 4 C 0.47 17.25 5.35 87.66 0.47 17.72 16 5 O -0.57 -26.43 13.49 -3.04 -0.04 -26.47 16 6 N -0.63 -23.04 4.37 -303.11 -1.32 -24.36 16 7 C 0.00 -0.17 6.35 38.56 0.24 0.08 16 8 C -0.10 -4.27 9.89 22.13 0.22 -4.05 16 9 C -0.23 -11.09 9.74 22.48 0.22 -10.87 16 10 C 0.07 4.12 5.60 -21.28 -0.12 4.00 16 11 C -0.49 -26.97 9.04 23.39 0.21 -26.76 16 12 H 0.08 4.30 7.91 -2.91 -0.02 4.27 16 13 C 0.03 1.54 5.15 85.24 0.44 1.98 16 14 N -0.82 -45.51 10.82 21.82 0.24 -45.27 16 15 Si 0.99 39.00 29.60 68.60 2.03 41.03 16 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 19 C -0.19 -10.68 8.66 22.48 0.19 -10.49 16 20 C -0.10 -5.39 8.65 22.14 0.19 -5.19 16 21 C -0.09 -2.24 4.86 30.20 0.15 -2.09 16 22 C -0.11 -2.01 5.24 30.14 0.16 -1.85 16 23 C -0.11 -1.64 5.85 31.32 0.18 -1.45 16 24 C -0.12 -1.93 5.31 30.14 0.16 -1.77 16 25 C -0.10 -1.69 5.39 30.20 0.16 -1.53 16 26 C -0.14 -3.42 3.20 28.74 0.09 -3.32 16 27 H 0.06 1.01 6.71 -2.39 -0.02 0.99 16 28 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 0.69 6.10 -2.39 -0.01 0.67 16 30 H 0.42 12.18 7.09 -92.71 -0.66 11.52 16 31 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 33 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 34 H 0.10 6.08 6.00 -2.91 -0.02 6.06 16 35 H 0.10 5.33 6.00 -2.91 -0.02 5.31 16 36 H 0.08 1.92 6.98 -2.39 -0.02 1.90 16 37 H 0.06 1.60 7.97 -2.39 -0.02 1.58 16 38 H 0.09 1.52 5.46 -2.39 -0.01 1.51 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.91 6.63 -2.39 -0.02 0.89 16 44 H 0.08 1.31 6.24 -2.39 -0.01 1.30 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.51 6.52 -2.39 -0.02 1.50 16 47 H 0.07 1.89 7.09 -2.39 -0.02 1.87 16 Total: -1.00 -67.85 354.49 4.27 -63.58 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.33 Total: 41.23 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.03 Total: -40.92 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -1.09 Total: -69.63 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -1.03 Total: -35.29 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -67.85 4.27 -63.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929404708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.862 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds