Wall clock time and date at job start Tue Mar 31 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99758 * 2 1 4 4 C 1.38756 * 120.05701 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94489 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05351 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11479 * 359.97438 * 6 5 4 8 8 C 1.38167 * 120.05326 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02697 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47403 * 266.23193 * 9 8 7 11 11 C 1.53002 * 112.84544 * 51.37462 * 10 9 8 12 12 N 1.46504 * 109.47534 * 64.81634 * 11 10 9 13 13 C 1.34769 * 120.00201 * 175.08900 * 12 11 10 14 14 O 1.21289 * 120.00037 * 5.03547 * 13 12 11 15 15 C 1.50695 * 120.00081 * 185.02719 * 13 12 11 16 16 C 1.50706 * 109.47265 * 185.33696 * 15 13 12 17 17 H 1.07993 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99592 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00427 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99509 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47559 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47448 * 119.99971 * 20 18 16 23 23 H 1.48502 * 109.47189 * 239.99607 * 20 18 16 24 24 C 1.53779 * 113.61722 * 280.06791 * 10 9 8 25 25 C 1.53783 * 87.08039 * 220.01844 * 24 10 9 26 26 C 1.53778 * 113.61656 * 182.56571 * 10 9 8 27 27 H 1.08997 * 109.47239 * 59.99922 * 1 2 3 28 28 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47317 * 300.00176 * 1 2 3 30 30 H 1.08000 * 120.02436 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.97207 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.94382 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.97479 * 180.28294 * 7 6 5 34 34 H 1.09007 * 109.47200 * 26.23512 * 9 8 7 35 35 H 1.09001 * 109.46883 * 146.22968 * 9 8 7 36 36 H 1.09005 * 109.46838 * 184.81377 * 11 10 9 37 37 H 1.09001 * 109.47112 * 304.81116 * 11 10 9 38 38 H 0.97001 * 119.99679 * 355.08960 * 12 11 10 39 39 H 1.09000 * 109.47080 * 305.33436 * 15 13 12 40 40 H 1.09001 * 109.47505 * 65.33261 * 15 13 12 41 41 H 0.97002 * 119.99892 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.61083 * 334.56724 * 24 10 9 43 43 H 1.08995 * 113.61249 * 105.46773 * 24 10 9 44 44 H 1.08996 * 113.61192 * 270.88101 * 25 24 10 45 45 H 1.08996 * 113.68927 * 139.99406 * 25 24 10 46 46 H 1.09003 * 113.61938 * 254.53388 * 26 10 9 47 47 H 1.09008 * 113.61097 * 25.43651 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0011 8 6 3.4310 1.2849 -0.0005 9 6 4.2537 0.0223 -0.0005 10 6 4.4521 -0.4572 -1.4399 11 6 4.9809 0.6413 -2.3643 12 7 6.3254 1.0350 -1.9359 13 6 7.0322 1.9217 -2.6643 14 8 6.5223 2.4626 -3.6227 15 6 8.4560 2.2412 -2.2880 16 6 8.9730 3.3472 -3.1716 17 1 8.3346 3.7755 -3.9300 18 6 10.2615 3.8114 -3.0123 19 7 11.0391 3.2895 -2.0890 20 14 10.9026 5.1817 -4.1079 21 1 9.8394 5.5931 -5.0596 22 1 11.2940 6.3436 -3.2699 23 1 12.0844 4.6977 -4.8658 24 6 3.2409 -1.2143 -2.0096 25 6 4.2483 -2.1753 -2.6628 26 6 5.2298 -1.7795 -1.5470 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2127 2.3203 -0.0005 31 1 1.3338 4.5114 -0.0019 32 1 3.7921 4.6381 -0.0016 33 1 5.1343 2.5753 0.0031 34 1 5.2246 0.2211 0.4534 35 1 3.7364 -0.7483 0.5711 36 1 5.0206 0.2672 -3.3874 37 1 4.3175 1.5050 -2.3188 38 1 6.7069 0.6575 -1.1279 39 1 8.4936 2.5606 -1.2466 40 1 9.0743 1.3530 -2.4181 41 1 11.9457 3.6159 -1.9772 42 1 2.6212 -1.6843 -1.2459 43 1 2.6619 -0.6341 -2.7280 44 1 4.5682 -1.8629 -3.6568 45 1 3.9434 -3.2210 -2.6255 46 1 6.2563 -1.6558 -1.8921 47 1 5.1537 -2.4041 -0.6568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:57 Heat of formation + Delta-G solvation = -43.392824 kcal Electronic energy + Delta-G solvation = -27266.192564 eV Core-core repulsion = 23607.391189 eV Total energy + Delta-G solvation = -3658.801374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73638 -39.45812 -38.05248 -37.39129 -33.65871 -32.87314 -32.67441 -30.11919 -29.26452 -28.27277 -27.27127 -26.17922 -25.57593 -23.41391 -22.63176 -22.11926 -21.07843 -19.52603 -18.31481 -17.97856 -16.35863 -16.30977 -16.03124 -15.94739 -15.65928 -15.39269 -14.98283 -14.62721 -14.45285 -14.14264 -14.02196 -13.88946 -13.37817 -12.91508 -12.71542 -12.61103 -12.42497 -12.20140 -12.18555 -12.01927 -11.66807 -11.47130 -11.23273 -11.21050 -11.05553 -10.84984 -10.72443 -10.59197 -10.44994 -10.13966 -10.03371 -9.90187 -9.20665 -8.78763 -8.55684 -8.41579 -8.27597 -8.12383 -6.02098 -4.00925 1.33165 1.46316 3.16253 3.35672 3.42703 3.51530 3.75407 3.82392 3.99212 4.50346 4.54251 4.65283 4.72227 4.76250 4.80915 4.91520 4.92665 4.97093 5.16715 5.20288 5.23608 5.36325 5.37856 5.40272 5.56060 5.64831 5.67079 5.76663 5.81326 5.91174 5.97856 6.00882 6.05414 6.12990 6.14467 6.32250 6.38488 6.48152 6.50782 6.52687 6.63922 6.80120 7.16093 7.26316 7.32715 7.38988 8.00328 8.14063 8.53478 9.10663 9.34277 9.64287 11.10368 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.003538 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.010324 B = 7912.449328 C = 9045.887270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.088 4.088 6 C -0.151 4.151 7 C -0.068 4.068 8 C -0.106 4.106 9 C -0.055 4.055 10 C -0.085 4.085 11 C 0.146 3.854 12 N -0.744 5.744 13 C 0.513 3.487 14 O -0.547 6.547 15 C 0.005 3.995 16 C -0.505 4.505 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.393 0.607 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.260 0.740 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 -9.781 8.099 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.106 4.106 6 C -0.169 4.169 7 C -0.086 4.086 8 C -0.106 4.106 9 C -0.092 4.092 10 C -0.086 4.086 11 C 0.022 3.978 12 N -0.399 5.399 13 C 0.303 3.697 14 O -0.423 6.423 15 C -0.034 4.034 16 C -0.543 4.543 17 H 0.093 0.907 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.154 4.154 25 C -0.182 4.182 26 C -0.169 4.169 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.227 0.773 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.223 -9.563 7.433 24.437 hybrid contribution 0.298 0.783 -0.123 0.847 sum -20.925 -8.780 7.311 23.841 Atomic orbital electron populations 1.23000 0.79110 1.03567 1.01115 1.86083 1.20623 1.26812 1.88790 1.18768 0.91702 0.84025 0.97298 1.21143 0.99616 0.92517 1.09791 1.20896 0.94712 0.96827 0.98160 1.21113 0.93829 0.98793 1.03212 1.21047 1.00420 0.90993 0.96182 1.19140 0.90320 0.95827 1.05333 1.20403 0.98795 0.94205 0.95837 1.22019 0.97690 0.94132 0.94742 1.20923 0.84692 0.95668 0.96537 1.46242 1.16637 1.47482 1.29496 1.21947 0.89643 0.76423 0.81663 1.90538 1.71946 1.50843 1.28968 1.19227 0.86291 0.98941 0.98970 1.21216 0.97793 1.17588 1.17720 0.90710 1.25000 0.96790 0.97183 0.95680 1.69969 1.08033 1.42746 1.33380 0.86411 0.78719 0.81659 0.80555 1.19501 1.21054 1.21056 1.22881 0.95485 0.97162 0.99844 1.22845 0.97563 0.99217 0.98547 1.22972 0.99012 0.95953 0.98981 0.92854 0.88529 0.93013 0.85934 0.86182 0.85862 0.85117 0.90949 0.90513 0.92271 0.91959 0.77301 0.93815 0.93440 0.93038 0.89259 0.92006 0.90289 0.91791 0.90905 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.15 7.70 -19.44 -0.15 -3.30 16 3 C 0.13 1.50 6.55 -39.22 -0.26 1.24 16 4 C -0.21 -2.33 9.04 -39.43 -0.36 -2.68 16 5 C -0.09 -1.01 10.04 -39.61 -0.40 -1.40 16 6 C -0.15 -1.97 10.04 -39.56 -0.40 -2.36 16 7 C -0.07 -0.94 8.38 -39.61 -0.33 -1.27 16 8 C -0.11 -1.33 4.20 -104.48 -0.44 -1.77 16 9 C -0.06 -0.63 4.40 -27.88 -0.12 -0.75 16 10 C -0.09 -1.01 0.53 -153.70 -0.08 -1.09 16 11 C 0.15 2.26 4.35 -4.04 -0.02 2.24 16 12 N -0.74 -12.73 5.20 -60.29 -0.31 -13.04 16 13 C 0.51 11.72 7.81 -10.99 -0.09 11.63 16 14 O -0.55 -14.51 15.48 5.55 0.09 -14.42 16 15 C 0.00 0.13 5.46 -29.03 -0.16 -0.03 16 16 C -0.50 -14.78 8.92 -34.44 -0.31 -15.09 16 17 H 0.07 2.30 6.77 -52.49 -0.36 1.94 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 C -0.12 -1.25 6.23 -25.92 -0.16 -1.41 16 25 C -0.14 -1.51 7.73 -25.92 -0.20 -1.71 16 26 C -0.13 -1.42 7.13 -25.92 -0.18 -1.61 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.13 1.87 8.05 -52.49 -0.42 1.45 16 34 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 35 H 0.08 0.82 7.51 -51.93 -0.39 0.43 16 36 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 37 H 0.06 1.07 6.39 -51.93 -0.33 0.74 16 38 H 0.39 5.82 7.77 -40.82 -0.32 5.50 16 39 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.09 0.90 6.98 -51.93 -0.36 0.54 16 43 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.08 0.90 7.61 -51.93 -0.40 0.51 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 47 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -33.29 377.24 -8.97 -42.26 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.39 Total: 4.75 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.60 Total: -13.42 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.42 Total: -38.89 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.06 Total: -17.72 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.29 -8.97 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds