Wall clock time and date at job start Tue Mar 31 2020 12:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99758 * 2 1 4 4 C 1.38756 * 120.05701 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94489 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05351 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11479 * 359.97438 * 6 5 4 8 8 C 1.38167 * 120.05326 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02697 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47403 * 266.23193 * 9 8 7 11 11 C 1.53002 * 112.84544 * 51.37462 * 10 9 8 12 12 N 1.46504 * 109.47534 * 64.81634 * 11 10 9 13 13 C 1.34769 * 120.00201 * 175.08900 * 12 11 10 14 14 O 1.21289 * 120.00037 * 5.03547 * 13 12 11 15 15 C 1.50695 * 120.00081 * 185.02719 * 13 12 11 16 16 C 1.50706 * 109.47265 * 185.33696 * 15 13 12 17 17 H 1.07993 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99592 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00427 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99509 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47559 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47448 * 119.99971 * 20 18 16 23 23 H 1.48502 * 109.47189 * 239.99607 * 20 18 16 24 24 C 1.53779 * 113.61722 * 280.06791 * 10 9 8 25 25 C 1.53783 * 87.08039 * 220.01844 * 24 10 9 26 26 C 1.53778 * 113.61656 * 182.56571 * 10 9 8 27 27 H 1.08997 * 109.47239 * 59.99922 * 1 2 3 28 28 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47317 * 300.00176 * 1 2 3 30 30 H 1.08000 * 120.02436 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.97207 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.94382 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.97479 * 180.28294 * 7 6 5 34 34 H 1.09007 * 109.47200 * 26.23512 * 9 8 7 35 35 H 1.09001 * 109.46883 * 146.22968 * 9 8 7 36 36 H 1.09005 * 109.46838 * 184.81377 * 11 10 9 37 37 H 1.09001 * 109.47112 * 304.81116 * 11 10 9 38 38 H 0.97001 * 119.99679 * 355.08960 * 12 11 10 39 39 H 1.09000 * 109.47080 * 305.33436 * 15 13 12 40 40 H 1.09001 * 109.47505 * 65.33261 * 15 13 12 41 41 H 0.97002 * 119.99892 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.61083 * 334.56724 * 24 10 9 43 43 H 1.08995 * 113.61249 * 105.46773 * 24 10 9 44 44 H 1.08996 * 113.61192 * 270.88101 * 25 24 10 45 45 H 1.08996 * 113.68927 * 139.99406 * 25 24 10 46 46 H 1.09003 * 113.61938 * 254.53388 * 26 10 9 47 47 H 1.09008 * 113.61097 * 25.43651 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0011 8 6 3.4310 1.2849 -0.0005 9 6 4.2537 0.0223 -0.0005 10 6 4.4521 -0.4572 -1.4399 11 6 4.9809 0.6413 -2.3643 12 7 6.3254 1.0350 -1.9359 13 6 7.0322 1.9217 -2.6643 14 8 6.5223 2.4626 -3.6227 15 6 8.4560 2.2412 -2.2880 16 6 8.9730 3.3472 -3.1716 17 1 8.3346 3.7755 -3.9300 18 6 10.2615 3.8114 -3.0123 19 7 11.0391 3.2895 -2.0890 20 14 10.9026 5.1817 -4.1079 21 1 9.8394 5.5931 -5.0596 22 1 11.2940 6.3436 -3.2699 23 1 12.0844 4.6977 -4.8658 24 6 3.2409 -1.2143 -2.0096 25 6 4.2483 -2.1753 -2.6628 26 6 5.2298 -1.7795 -1.5470 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2127 2.3203 -0.0005 31 1 1.3338 4.5114 -0.0019 32 1 3.7921 4.6381 -0.0016 33 1 5.1343 2.5753 0.0031 34 1 5.2246 0.2211 0.4534 35 1 3.7364 -0.7483 0.5711 36 1 5.0206 0.2672 -3.3874 37 1 4.3175 1.5050 -2.3188 38 1 6.7069 0.6575 -1.1279 39 1 8.4936 2.5606 -1.2466 40 1 9.0743 1.3530 -2.4181 41 1 11.9457 3.6159 -1.9772 42 1 2.6212 -1.6843 -1.2459 43 1 2.6619 -0.6341 -2.7280 44 1 4.5682 -1.8629 -3.6568 45 1 3.9434 -3.2210 -2.6255 46 1 6.2563 -1.6558 -1.8921 47 1 5.1537 -2.4041 -0.6568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:56 Heat of formation + Delta-G solvation = -62.835760 kcal Electronic energy + Delta-G solvation = -27267.035673 eV Core-core repulsion = 23607.391189 eV Total energy + Delta-G solvation = -3659.644483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70285 -40.56688 -39.64405 -38.21594 -35.20745 -35.05238 -33.68940 -31.21883 -31.00286 -29.31415 -28.00928 -27.51795 -26.51753 -25.28299 -23.73065 -22.99659 -21.98554 -21.28664 -19.37958 -18.83731 -18.50354 -17.55995 -17.08590 -16.97130 -16.82300 -16.53470 -16.37959 -16.25064 -15.63773 -15.48845 -15.29707 -14.69843 -14.52938 -14.28976 -14.16639 -13.88735 -13.76023 -13.48345 -13.17018 -13.05477 -12.90635 -12.78623 -12.58503 -12.56321 -12.36247 -12.10330 -12.04415 -11.92798 -11.68778 -11.43467 -11.40545 -11.08489 -10.97985 -10.62422 -10.47175 -9.91526 -9.70277 -9.00664 -8.24811 -6.31574 0.40482 0.53365 1.38789 1.39533 1.54576 1.93516 2.34709 2.45256 2.53638 2.83652 3.10405 3.57099 3.68038 3.76229 3.94328 3.96709 4.04701 4.17656 4.24351 4.36930 4.38810 4.44882 4.47214 4.54716 4.61194 4.71137 4.73862 4.81627 4.85555 4.87627 4.96525 4.99451 5.03289 5.09894 5.14517 5.23042 5.24416 5.27916 5.41484 5.42086 5.56601 5.62144 5.62892 5.69074 5.75957 5.89229 6.07550 6.53378 6.74061 6.86914 7.34923 7.56162 8.87510 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.003538 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.010324 B = 7912.449328 C = 9045.887270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.316 6.316 3 C 0.126 3.874 4 C -0.213 4.213 5 C -0.090 4.090 6 C -0.174 4.174 7 C -0.089 4.089 8 C -0.118 4.118 9 C -0.050 4.050 10 C -0.083 4.083 11 C 0.152 3.848 12 N -0.717 5.717 13 C 0.519 3.481 14 O -0.588 6.588 15 C 0.010 3.990 16 C -0.535 4.535 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.962 3.038 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.127 4.127 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.408 0.592 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.267 0.733 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.700 -10.986 8.826 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.231 4.231 5 C -0.108 4.108 6 C -0.193 4.193 7 C -0.107 4.107 8 C -0.118 4.118 9 C -0.088 4.088 10 C -0.083 4.083 11 C 0.028 3.972 12 N -0.370 5.370 13 C 0.308 3.692 14 O -0.468 6.468 15 C -0.030 4.030 16 C -0.573 4.573 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.787 3.213 21 H -0.201 1.201 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.143 4.143 25 C -0.180 4.180 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.244 0.756 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.824 -10.814 8.208 26.556 hybrid contribution 0.703 1.111 -0.309 1.350 sum -22.121 -9.703 7.899 25.414 Atomic orbital electron populations 1.23300 0.77130 1.05396 1.01845 1.86062 1.22610 1.25843 1.88425 1.18852 0.91541 0.85013 0.96544 1.21478 1.01041 0.91960 1.08651 1.21174 0.94114 0.98211 0.97318 1.21253 0.94967 0.98572 1.04460 1.21013 0.99749 0.92136 0.97843 1.19242 0.91238 0.95668 1.05687 1.20398 0.98864 0.94134 0.95365 1.21925 0.98836 0.93323 0.94252 1.20944 0.82933 0.96357 0.96921 1.45886 1.16967 1.45337 1.28803 1.21427 0.89084 0.77138 0.81561 1.90514 1.72550 1.52809 1.30940 1.19056 0.88007 0.97727 0.98169 1.21387 0.98371 1.19201 1.18326 0.92930 1.25764 0.96742 0.99341 0.96936 1.70035 1.08473 1.43663 1.34183 0.85438 0.78036 0.79018 0.78798 1.20119 1.19627 1.19754 1.22844 0.94961 0.96650 0.99834 1.22824 0.97165 1.00340 0.97633 1.23005 0.98092 0.95280 1.00053 0.92355 0.86282 0.91985 0.83247 0.83968 0.86175 0.86902 0.91015 0.88981 0.93643 0.93611 0.75633 0.94040 0.94136 0.92411 0.87640 0.93019 0.91776 0.89741 0.92299 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -5.57 7.70 -92.47 -0.71 -6.28 16 3 C 0.13 2.77 6.55 22.51 0.15 2.91 16 4 C -0.21 -4.27 9.04 22.37 0.20 -4.07 16 5 C -0.09 -1.99 10.04 22.25 0.22 -1.77 16 6 C -0.17 -4.67 10.04 22.28 0.22 -4.45 16 7 C -0.09 -2.53 8.38 22.25 0.19 -2.35 16 8 C -0.12 -2.91 4.20 -19.77 -0.08 -3.00 16 9 C -0.05 -1.08 4.40 29.85 0.13 -0.95 16 10 C -0.08 -1.86 0.53 -51.66 -0.03 -1.89 16 11 C 0.15 4.79 4.35 86.38 0.38 5.17 16 12 N -0.72 -25.23 5.20 -463.05 -2.41 -27.63 16 13 C 0.52 24.62 7.81 87.66 0.68 25.31 16 14 O -0.59 -32.59 15.48 -3.06 -0.05 -32.63 16 15 C 0.01 0.52 5.46 29.10 0.16 0.68 16 16 C -0.53 -32.27 8.92 25.60 0.23 -32.04 16 17 H 0.05 3.36 6.77 -2.91 -0.02 3.34 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.92 -54.69 13.29 21.45 0.28 -54.40 16 20 Si 0.96 46.17 29.54 68.60 2.03 48.19 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.11 -2.05 6.23 31.12 0.19 -1.86 16 25 C -0.14 -2.70 7.73 31.12 0.24 -2.46 16 26 C -0.13 -2.50 7.13 31.12 0.22 -2.28 16 27 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 28 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 30 H 0.15 2.10 6.30 -2.91 -0.02 2.09 16 31 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.11 3.47 8.05 -2.91 -0.02 3.45 16 34 H 0.07 1.52 7.45 -2.38 -0.02 1.50 16 35 H 0.09 1.72 7.51 -2.39 -0.02 1.70 16 36 H 0.05 1.57 7.31 -2.38 -0.02 1.56 16 37 H 0.05 1.63 6.39 -2.39 -0.02 1.62 16 38 H 0.41 12.20 7.77 -92.71 -0.72 11.48 16 39 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.11 1.77 6.98 -2.39 -0.02 1.75 16 43 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 44 H 0.06 1.42 7.61 -2.39 -0.02 1.40 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.34 7.96 -2.39 -0.02 1.32 16 47 H 0.10 1.62 8.10 -2.38 -0.02 1.60 16 Total: -1.00 -72.98 377.24 4.07 -68.90 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.25 Total: 24.51 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 4.68 Total: -20.65 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.12 Total: -82.03 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.76 Total: -38.92 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.98 4.07 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.067 kcal (2) G-P(sol) polarization free energy of solvation -72.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds