Wall clock time and date at job start Tue Mar 31 2020 11:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47436 * 2 1 4 4 C 1.34711 * 117.00288 * 179.97438 * 3 2 1 5 5 O 1.21475 * 119.99347 * 0.02562 * 4 3 2 6 6 C 1.47739 * 120.00163 * 180.02562 * 4 3 2 7 7 C 1.39660 * 120.11424 * 6.16260 * 6 4 3 8 8 C 1.37974 * 119.99666 * 180.02562 * 7 6 4 9 9 C 1.38254 * 120.23332 * 359.74868 * 8 7 6 10 10 C 1.38987 * 120.22951 * 0.51020 * 9 8 7 11 11 N 1.39717 * 119.99932 * 179.76855 * 10 9 8 12 12 C 1.46502 * 119.99988 * 359.72194 * 11 10 9 13 13 H 1.08997 * 109.41335 * 324.85940 * 12 11 10 14 14 C 1.52954 * 109.41364 * 84.64682 * 12 11 10 15 15 C 1.53230 * 109.40371 * 183.70093 * 14 12 11 16 16 C 1.51272 * 108.53977 * 305.37557 * 15 14 12 17 17 C 1.37869 * 120.84993 * 231.36868 * 16 15 14 18 18 N 1.31519 * 120.00280 * 359.97438 * 17 16 15 19 19 Si 1.86803 * 119.99885 * 179.97438 * 17 16 15 20 20 H 1.48497 * 109.47109 * 89.99928 * 19 17 16 21 21 H 1.48504 * 109.47010 * 210.00059 * 19 17 16 22 22 H 1.48499 * 109.47165 * 329.99657 * 19 17 16 23 23 C 1.51297 * 118.30284 * 51.34302 * 16 15 14 24 24 C 1.52956 * 109.41193 * 205.00393 * 12 11 10 25 25 C 1.38666 * 119.99763 * 359.48669 * 10 9 8 26 26 C 1.50698 * 120.11572 * 180.27452 * 25 10 9 27 27 H 1.08996 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46931 * 299.99618 * 1 2 3 29 29 H 1.09003 * 109.46704 * 59.99545 * 1 2 3 30 30 H 1.09007 * 109.46472 * 240.00054 * 2 1 3 31 31 H 1.08999 * 109.46920 * 120.00918 * 2 1 3 32 32 H 1.07992 * 120.00190 * 0.04775 * 7 6 4 33 33 H 1.08002 * 119.87958 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.88530 * 180.25412 * 9 8 7 35 35 H 0.96994 * 119.99525 * 179.72240 * 11 10 9 36 36 H 1.08998 * 109.48687 * 303.68664 * 14 12 11 37 37 H 1.09006 * 109.48054 * 63.72650 * 14 12 11 38 38 H 1.08997 * 109.62493 * 65.09122 * 15 14 12 39 39 H 1.08997 * 109.62492 * 185.46839 * 15 14 12 40 40 H 0.97004 * 119.99995 * 179.97438 * 18 17 16 41 41 H 1.09006 * 109.63938 * 188.94155 * 23 16 15 42 42 H 1.09008 * 109.62221 * 68.37043 * 23 16 15 43 43 H 1.09002 * 109.48520 * 296.27403 * 24 12 11 44 44 H 1.08997 * 109.48741 * 56.29824 * 24 12 11 45 45 H 1.09000 * 109.47147 * 96.50557 * 26 25 10 46 46 H 1.09001 * 109.47220 * 216.50826 * 26 25 10 47 47 H 1.09003 * 109.47120 * 336.50606 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0894 0.5819 0.0005 6 6 3.9143 2.9106 0.0011 7 6 3.0722 4.0172 0.1309 8 6 3.6022 5.2911 0.1306 9 6 4.9665 5.4774 0.0074 10 6 5.8129 4.3832 -0.1276 11 7 7.1905 4.5774 -0.2566 12 6 7.7422 5.9345 -0.2556 13 1 7.0459 6.6090 -0.7537 14 6 7.9517 6.3971 1.1872 15 6 8.4414 7.8490 1.1902 16 6 9.6754 7.9423 0.3203 17 6 10.8306 8.5284 0.7924 18 7 10.8692 9.0157 2.0134 19 14 12.3409 8.6302 -0.3021 20 1 12.3084 9.8984 -1.0739 21 1 13.5647 8.5935 0.5384 22 1 12.3505 7.4795 -1.2407 23 6 9.6098 7.3755 -1.0810 24 6 9.0776 5.9409 -1.0014 25 6 5.2906 3.0987 -0.1285 26 6 6.2064 1.9102 -0.2685 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 2.0063 3.8757 0.2317 33 1 2.9492 6.1455 0.2306 34 1 5.3757 6.4768 0.0120 35 1 7.7814 3.8135 -0.3468 36 1 7.0095 6.3300 1.7310 37 1 8.6954 5.7617 1.6683 38 1 7.6624 8.4989 0.7915 39 1 8.6844 8.1513 2.2089 40 1 11.6821 9.4277 2.3456 41 1 10.6066 7.3724 -1.5220 42 1 8.9389 7.9816 -1.6900 43 1 9.7947 5.3163 -0.4685 44 1 8.9334 5.5502 -2.0087 45 1 6.4365 1.5104 0.7191 46 1 5.7159 1.1419 -0.8662 47 1 7.1293 2.2185 -0.7597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:42 Heat of formation + Delta-G solvation = -75.086275 kcal Electronic energy + Delta-G solvation = -26434.200954 eV Core-core repulsion = 22774.025249 eV Total energy + Delta-G solvation = -3660.175705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74582 -39.36320 -37.32436 -36.63075 -34.41078 -32.60367 -32.15498 -31.62479 -29.70480 -29.47141 -27.25818 -26.45037 -24.49454 -23.03403 -22.02291 -21.71059 -20.98467 -20.57463 -19.35640 -18.04505 -16.98055 -16.71131 -16.40633 -15.87724 -15.47948 -15.16051 -14.57324 -14.48033 -14.01332 -13.73097 -13.67494 -13.25922 -13.13999 -13.04173 -13.00137 -12.48418 -12.36398 -12.31429 -12.05078 -11.94368 -11.87872 -11.64231 -11.51757 -11.14444 -11.06758 -10.95217 -10.76250 -10.72456 -10.29137 -10.06354 -10.05929 -9.79151 -9.52800 -8.97966 -8.79096 -8.67791 -8.51606 -7.07612 -6.14735 -4.06682 0.82439 1.66570 2.50825 2.63165 3.22934 3.30901 3.31977 3.78463 3.95356 4.32966 4.56442 4.64359 4.71810 4.92588 4.97701 5.10354 5.11073 5.17650 5.34425 5.46863 5.51901 5.54125 5.63914 5.71533 5.78891 5.83565 5.84004 5.87359 6.07099 6.16259 6.34432 6.37827 6.41823 6.51434 6.56963 6.61145 6.68247 6.70237 6.83890 6.97645 6.98119 7.05643 7.30965 7.57051 7.65990 7.70004 7.72026 7.80181 8.06003 8.33081 8.91558 9.48931 10.94496 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.002548 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.108129 B =10986.082795 C =11384.484064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.511 3.489 5 O -0.505 6.505 6 C -0.090 4.090 7 C -0.131 4.131 8 C -0.090 4.090 9 C -0.160 4.160 10 C 0.219 3.781 11 N -0.737 5.737 12 C 0.158 3.842 13 H 0.069 0.931 14 C -0.120 4.120 15 C 0.012 3.988 16 C -0.489 4.489 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.265 1.265 23 C -0.018 4.018 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.111 4.111 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.395 0.605 36 H 0.033 0.967 37 H 0.051 0.949 38 H 0.004 0.996 39 H 0.058 0.942 40 H 0.264 0.736 41 H 0.038 0.962 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 -13.675 -4.565 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.271 6.271 4 C 0.357 3.643 5 O -0.395 6.395 6 C -0.092 4.092 7 C -0.152 4.152 8 C -0.108 4.108 9 C -0.183 4.183 10 C 0.113 3.887 11 N -0.364 5.364 12 C 0.055 3.945 13 H 0.087 0.913 14 C -0.159 4.159 15 C -0.026 4.026 16 C -0.508 4.508 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.190 1.190 23 C -0.056 4.056 24 C -0.151 4.151 25 C -0.110 4.110 26 C -0.167 4.167 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.231 0.769 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.301 -13.691 -4.428 21.744 hybrid contribution 1.136 -0.338 -0.437 1.263 sum -15.165 -14.029 -4.865 21.224 Atomic orbital electron populations 1.21804 0.92647 1.02891 1.03597 1.23002 0.95297 0.80300 1.02562 1.86561 1.24148 1.32062 1.84372 1.21330 0.80255 0.90114 0.72588 1.90775 1.59741 1.42955 1.45992 1.18537 0.92778 0.89504 1.08360 1.21022 0.99373 0.91545 1.03221 1.20839 0.94541 0.96721 0.98723 1.21072 0.93278 0.98500 1.05475 1.17537 0.85224 0.92072 0.93859 1.45387 1.02820 1.09101 1.79135 1.21041 0.94966 0.80913 0.97591 0.91271 1.22078 0.98651 1.01041 0.94095 1.19356 0.94276 0.89685 0.99316 1.20028 0.97229 1.36872 0.96699 1.24859 0.98168 0.94804 0.94869 1.69839 1.28311 1.38617 1.15789 0.86689 0.82478 0.78768 0.80573 1.20384 1.21637 1.19010 1.19787 0.97001 0.91324 0.97449 1.21821 0.95264 1.00953 0.97054 1.19358 0.92535 0.93942 1.05198 1.20868 0.97418 0.95648 1.02755 0.90304 0.91417 0.91443 0.91289 0.91254 0.85399 0.85560 0.84911 0.76897 0.94789 0.93028 0.97809 0.92348 0.92554 0.94400 0.96293 0.92623 0.94415 0.91192 0.89414 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.11 9.49 -40.52 -0.38 -4.50 16 4 C 0.51 6.97 7.83 34.61 0.27 7.24 16 5 O -0.50 -7.59 13.13 -19.25 -0.25 -7.85 16 6 C -0.09 -1.26 5.87 -105.01 -0.62 -1.87 16 7 C -0.13 -1.63 9.61 -39.15 -0.38 -2.01 16 8 C -0.09 -1.12 10.02 -39.67 -0.40 -1.52 16 9 C -0.16 -2.33 8.78 -39.30 -0.35 -2.68 16 10 C 0.22 3.35 6.61 -83.83 -0.55 2.80 16 11 N -0.74 -11.59 5.15 -52.24 -0.27 -11.86 16 12 C 0.16 2.85 2.04 -67.98 -0.14 2.71 16 13 H 0.07 1.26 6.49 -51.93 -0.34 0.92 16 14 C -0.12 -2.44 5.41 -26.64 -0.14 -2.59 16 15 C 0.01 0.28 5.96 -27.48 -0.16 0.11 16 16 C -0.49 -12.36 5.51 -98.91 -0.55 -12.91 16 17 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 18 N -0.89 -25.05 12.74 55.43 0.71 -24.34 16 19 Si 0.89 20.49 27.53 -169.99 -4.68 15.81 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.26 -5.88 6.10 56.52 0.35 -5.54 16 23 C -0.02 -0.39 5.59 -27.47 -0.15 -0.54 16 24 C -0.11 -2.13 5.40 -26.64 -0.14 -2.28 16 25 C -0.11 -1.54 5.93 -103.99 -0.62 -2.16 16 26 C -0.11 -1.50 8.44 36.00 0.30 -1.19 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.13 1.35 7.62 -52.49 -0.40 0.95 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.98 6.09 -52.49 -0.32 1.67 16 35 H 0.40 5.75 6.46 -40.82 -0.26 5.49 16 36 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.06 1.56 7.08 -51.93 -0.37 1.19 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.04 0.84 4.60 -51.93 -0.24 0.60 16 42 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.23 5.85 -51.93 -0.30 0.93 16 47 H 0.05 0.67 6.23 -51.93 -0.32 0.34 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -28.27 367.32 -9.67 -37.94 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.22 Total: 3.97 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.11 Total: -14.71 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.44 Total: -36.20 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.64 Total: -12.34 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.68 Total: 15.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.27 -9.67 -37.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.151 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds