Wall clock time and date at job start Tue Mar 31 2020 11:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47436 * 2 1 4 4 C 1.34711 * 117.00288 * 179.97438 * 3 2 1 5 5 O 1.21475 * 119.99347 * 0.02562 * 4 3 2 6 6 C 1.47739 * 120.00163 * 180.02562 * 4 3 2 7 7 C 1.39660 * 120.11424 * 6.16260 * 6 4 3 8 8 C 1.37974 * 119.99666 * 180.02562 * 7 6 4 9 9 C 1.38254 * 120.23332 * 359.74868 * 8 7 6 10 10 C 1.38987 * 120.22951 * 0.51020 * 9 8 7 11 11 N 1.39717 * 119.99932 * 179.76855 * 10 9 8 12 12 C 1.46502 * 119.99988 * 359.72194 * 11 10 9 13 13 H 1.08997 * 109.41335 * 324.85940 * 12 11 10 14 14 C 1.52954 * 109.41364 * 84.64682 * 12 11 10 15 15 C 1.53230 * 109.40371 * 183.70093 * 14 12 11 16 16 C 1.51272 * 108.53977 * 305.37557 * 15 14 12 17 17 C 1.37869 * 120.84993 * 231.36868 * 16 15 14 18 18 N 1.31519 * 120.00280 * 359.97438 * 17 16 15 19 19 Si 1.86803 * 119.99885 * 179.97438 * 17 16 15 20 20 H 1.48497 * 109.47109 * 89.99928 * 19 17 16 21 21 H 1.48504 * 109.47010 * 210.00059 * 19 17 16 22 22 H 1.48499 * 109.47165 * 329.99657 * 19 17 16 23 23 C 1.51297 * 118.30284 * 51.34302 * 16 15 14 24 24 C 1.52956 * 109.41193 * 205.00393 * 12 11 10 25 25 C 1.38666 * 119.99763 * 359.48669 * 10 9 8 26 26 C 1.50698 * 120.11572 * 180.27452 * 25 10 9 27 27 H 1.08996 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46931 * 299.99618 * 1 2 3 29 29 H 1.09003 * 109.46704 * 59.99545 * 1 2 3 30 30 H 1.09007 * 109.46472 * 240.00054 * 2 1 3 31 31 H 1.08999 * 109.46920 * 120.00918 * 2 1 3 32 32 H 1.07992 * 120.00190 * 0.04775 * 7 6 4 33 33 H 1.08002 * 119.87958 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.88530 * 180.25412 * 9 8 7 35 35 H 0.96994 * 119.99525 * 179.72240 * 11 10 9 36 36 H 1.08998 * 109.48687 * 303.68664 * 14 12 11 37 37 H 1.09006 * 109.48054 * 63.72650 * 14 12 11 38 38 H 1.08997 * 109.62493 * 65.09122 * 15 14 12 39 39 H 1.08997 * 109.62492 * 185.46839 * 15 14 12 40 40 H 0.97004 * 119.99995 * 179.97438 * 18 17 16 41 41 H 1.09006 * 109.63938 * 188.94155 * 23 16 15 42 42 H 1.09008 * 109.62221 * 68.37043 * 23 16 15 43 43 H 1.09002 * 109.48520 * 296.27403 * 24 12 11 44 44 H 1.08997 * 109.48741 * 56.29824 * 24 12 11 45 45 H 1.09000 * 109.47147 * 96.50557 * 26 25 10 46 46 H 1.09001 * 109.47220 * 216.50826 * 26 25 10 47 47 H 1.09003 * 109.47120 * 336.50606 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0894 0.5819 0.0005 6 6 3.9143 2.9106 0.0011 7 6 3.0722 4.0172 0.1309 8 6 3.6022 5.2911 0.1306 9 6 4.9665 5.4774 0.0074 10 6 5.8129 4.3832 -0.1276 11 7 7.1905 4.5774 -0.2566 12 6 7.7422 5.9345 -0.2556 13 1 7.0459 6.6090 -0.7537 14 6 7.9517 6.3971 1.1872 15 6 8.4414 7.8490 1.1902 16 6 9.6754 7.9423 0.3203 17 6 10.8306 8.5284 0.7924 18 7 10.8692 9.0157 2.0134 19 14 12.3409 8.6302 -0.3021 20 1 12.3084 9.8984 -1.0739 21 1 13.5647 8.5935 0.5384 22 1 12.3505 7.4795 -1.2407 23 6 9.6098 7.3755 -1.0810 24 6 9.0776 5.9409 -1.0014 25 6 5.2906 3.0987 -0.1285 26 6 6.2064 1.9102 -0.2685 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 2.0063 3.8757 0.2317 33 1 2.9492 6.1455 0.2306 34 1 5.3757 6.4768 0.0120 35 1 7.7814 3.8135 -0.3468 36 1 7.0095 6.3300 1.7310 37 1 8.6954 5.7617 1.6683 38 1 7.6624 8.4989 0.7915 39 1 8.6844 8.1513 2.2089 40 1 11.6821 9.4277 2.3456 41 1 10.6066 7.3724 -1.5220 42 1 8.9389 7.9816 -1.6900 43 1 9.7947 5.3163 -0.4685 44 1 8.9334 5.5502 -2.0087 45 1 6.4365 1.5104 0.7191 46 1 5.7159 1.1419 -0.8662 47 1 7.1293 2.2185 -0.7597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:37 Heat of formation + Delta-G solvation = -88.302817 kcal Electronic energy + Delta-G solvation = -26434.774067 eV Core-core repulsion = 22774.025249 eV Total energy + Delta-G solvation = -3660.748818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -41.76370 -40.49231 -38.75581 -37.64489 -35.85829 -33.98599 -33.31413 -32.59685 -31.43600 -30.76101 -28.62343 -27.71842 -25.47853 -24.15996 -23.43355 -23.21603 -22.15485 -21.81064 -20.86672 -19.11827 -18.15087 -17.92624 -17.59593 -17.16170 -16.66104 -16.38173 -16.23815 -15.48453 -15.29517 -15.01603 -14.83218 -14.61571 -14.45342 -14.18852 -14.05898 -14.00604 -13.66373 -13.32062 -13.28416 -13.16350 -12.84736 -12.82897 -12.68332 -12.64163 -12.55430 -12.49096 -12.09965 -11.90582 -11.75723 -11.50012 -11.32109 -11.20112 -11.10365 -10.76941 -10.55257 -10.42112 -9.82690 -8.27621 -8.14645 -6.09977 -0.24555 0.61113 1.40018 1.42430 1.50133 1.56462 1.62250 2.41529 2.53901 2.88284 3.13660 3.65590 3.89964 3.99107 4.03739 4.09902 4.10960 4.16557 4.25790 4.36965 4.46892 4.49796 4.57551 4.73445 4.74769 4.76230 4.81304 4.90380 4.95528 4.97335 5.01919 5.05296 5.10283 5.20533 5.23942 5.26453 5.26881 5.35595 5.41277 5.51960 5.58631 5.59401 5.65206 5.77762 5.85933 5.87468 6.35511 6.42492 6.71552 6.87834 6.97278 7.48020 8.95404 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.002548 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.108129 B =10986.082795 C =11384.484064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.511 3.489 5 O -0.525 6.525 6 C -0.104 4.104 7 C -0.120 4.120 8 C -0.085 4.085 9 C -0.171 4.171 10 C 0.203 3.797 11 N -0.737 5.737 12 C 0.174 3.826 13 H 0.072 0.928 14 C -0.106 4.106 15 C 0.009 3.991 16 C -0.496 4.496 17 C 0.018 3.982 18 N -0.933 5.933 19 Si 0.940 3.060 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.246 1.246 23 C -0.021 4.021 24 C -0.107 4.107 25 C -0.114 4.114 26 C -0.105 4.105 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.127 0.873 35 H 0.401 0.599 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.039 0.961 42 H 0.027 0.973 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.547 -14.940 -6.246 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.358 3.642 5 O -0.416 6.416 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.194 4.194 10 C 0.098 3.902 11 N -0.365 5.365 12 C 0.069 3.931 13 H 0.090 0.910 14 C -0.146 4.146 15 C -0.029 4.029 16 C -0.515 4.515 17 C -0.180 4.180 18 N -0.574 5.574 19 Si 0.767 3.233 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.170 1.170 23 C -0.059 4.059 24 C -0.145 4.145 25 C -0.119 4.119 26 C -0.161 4.161 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.022 0.978 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.180 -14.983 -6.131 24.343 hybrid contribution 1.504 0.022 0.125 1.509 sum -16.676 -14.961 -6.006 23.195 Atomic orbital electron populations 1.21826 0.90262 1.04405 1.03784 1.23321 0.97122 0.78926 1.02615 1.86551 1.22849 1.33852 1.83827 1.21319 0.80864 0.89784 0.72194 1.90764 1.60361 1.43496 1.47013 1.18753 0.92879 0.90318 1.08573 1.21313 1.00352 0.91011 1.01359 1.21151 0.94045 0.97771 0.97379 1.21207 0.94297 0.98043 1.05857 1.17641 0.84924 0.92609 0.94985 1.45076 1.03254 1.08088 1.80121 1.20661 0.94835 0.82266 0.95303 0.90990 1.21874 0.98211 0.98146 0.96324 1.19309 0.94388 0.92089 0.97140 1.20665 0.97126 1.35397 0.98334 1.25659 1.01227 0.95163 0.95971 1.69992 1.28849 1.40750 1.17765 0.85815 0.78970 0.79373 0.79163 1.20078 1.22377 1.17004 1.19812 0.97586 0.93182 0.95292 1.21704 0.95321 0.98784 0.98738 1.19481 0.93151 0.93921 1.05372 1.20802 0.97661 0.95213 1.02447 0.88133 0.91234 0.91196 0.91218 0.91330 0.83162 0.82715 0.85502 0.76250 0.93978 0.94753 0.97760 0.96017 0.92979 0.94265 0.95445 0.93150 0.91633 0.91687 0.89990 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 71.98 0.74 -0.63 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.56 9.49 -56.21 -0.53 -8.10 16 4 C 0.51 13.27 7.83 70.33 0.55 13.82 16 5 O -0.52 -15.40 13.13 19.92 0.26 -15.13 16 6 C -0.10 -2.72 5.87 -20.12 -0.12 -2.83 16 7 C -0.12 -2.67 9.61 22.55 0.22 -2.45 16 8 C -0.09 -1.89 10.02 22.21 0.22 -1.67 16 9 C -0.17 -4.67 8.78 22.45 0.20 -4.47 16 10 C 0.20 5.90 6.61 38.17 0.25 6.15 16 11 N -0.74 -22.02 5.15 -319.20 -1.64 -23.66 16 12 C 0.17 6.01 2.04 44.96 0.09 6.10 16 13 H 0.07 2.48 6.49 -2.39 -0.02 2.47 16 14 C -0.11 -4.34 5.41 30.66 0.17 -4.17 16 15 C 0.01 0.43 5.96 30.11 0.18 0.61 16 16 C -0.50 -25.16 5.51 -16.16 -0.09 -25.25 16 17 C 0.02 0.95 5.46 84.65 0.46 1.42 16 18 N -0.93 -54.55 12.74 21.45 0.27 -54.27 16 19 Si 0.94 42.16 27.53 68.60 1.89 44.05 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.25 -10.15 6.10 99.48 0.61 -9.55 16 23 C -0.02 -0.88 5.59 30.11 0.17 -0.71 16 24 C -0.11 -3.83 5.40 30.65 0.17 -3.67 16 25 C -0.11 -3.20 5.93 -19.46 -0.12 -3.31 16 26 C -0.10 -2.74 8.44 71.24 0.60 -2.14 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.15 2.65 7.62 -2.91 -0.02 2.62 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.13 3.60 6.09 -2.91 -0.02 3.58 16 35 H 0.40 11.02 6.46 -92.71 -0.60 10.42 16 36 H 0.04 1.62 7.67 -2.39 -0.02 1.60 16 37 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.02 1.19 7.08 -2.39 -0.02 1.17 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.04 1.64 4.60 -2.38 -0.01 1.63 16 42 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.24 5.85 -2.39 -0.01 2.23 16 47 H 0.06 1.50 6.23 -2.39 -0.01 1.49 16 Total: -1.00 -61.75 367.32 4.67 -57.08 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.28 Total: 21.96 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.14 Total: -21.93 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -1.37 Total: -77.94 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.27 Total: -23.23 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.89 Total: 44.05 kcal Total: -61.75 4.67 -57.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.219 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds