Wall clock time and date at job start Tue Mar 31 2020 11:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.38518 * 119.99684 * 2 1 4 4 N 1.31476 * 126.44034 * 91.98226 * 3 2 1 5 5 N 1.28422 * 110.51464 * 179.87855 * 4 3 2 6 6 N 1.28911 * 110.31319 * 0.39447 * 5 4 3 7 7 N 1.35322 * 126.44332 * 272.29559 * 3 2 1 8 8 C 1.46498 * 127.38285 * 359.92491 * 7 3 2 9 9 C 1.39455 * 120.00347 * 180.02562 * 2 1 3 10 10 C 1.39069 * 119.62133 * 177.99207 * 9 2 1 11 11 C 1.38290 * 119.17444 * 180.25276 * 10 9 2 12 12 C 1.39416 * 118.43791 * 359.50279 * 11 10 9 13 13 N 1.39999 * 120.40819 * 180.27251 * 12 11 10 14 14 C 1.46506 * 119.99956 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47347 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46893 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46833 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00191 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99916 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00035 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47155 * 90.00255 * 21 19 17 23 23 H 1.48501 * 109.47231 * 210.00024 * 21 19 17 24 24 H 1.48492 * 109.47303 * 330.00217 * 21 19 17 25 25 C 1.38671 * 119.17849 * 0.25104 * 12 11 10 26 26 N 1.31961 * 120.74937 * 0.02562 * 25 12 11 27 27 H 1.09007 * 109.46917 * 271.31081 * 1 2 3 28 28 H 1.09000 * 109.47886 * 31.31428 * 1 2 3 29 29 H 1.09000 * 109.47238 * 151.32195 * 1 2 3 30 30 H 1.09006 * 109.46760 * 84.23453 * 8 7 3 31 31 H 1.09000 * 109.47035 * 204.22702 * 8 7 3 32 32 H 1.08997 * 109.47305 * 324.23250 * 8 7 3 33 33 H 1.08001 * 120.41477 * 0.02562 * 10 9 2 34 34 H 1.07999 * 120.78010 * 179.77812 * 11 10 9 35 35 H 0.96993 * 120.00277 * 0.02562 * 13 12 11 36 36 H 1.08998 * 109.46877 * 300.00634 * 14 13 12 37 37 H 1.09003 * 109.46565 * 59.99924 * 14 13 12 38 38 H 1.08998 * 109.47019 * 300.00355 * 15 14 13 39 39 H 1.08997 * 109.46866 * 60.00367 * 15 14 13 40 40 H 1.08998 * 109.47478 * 299.99951 * 16 15 14 41 41 H 1.08997 * 109.47165 * 60.00427 * 16 15 14 42 42 H 0.96998 * 120.00058 * 180.02562 * 20 19 17 43 43 H 1.07998 * 119.62304 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1574 1.1996 0.0000 4 7 2.5796 1.8577 1.0571 5 7 3.1886 2.9320 0.7048 6 7 3.1938 3.0430 -0.5795 7 7 2.5216 1.9176 -1.0877 8 6 2.2701 1.5916 -2.4937 9 6 2.1623 -1.2077 -0.0005 10 6 3.5523 -1.1988 -0.0429 11 6 4.2343 -2.4018 -0.0484 12 6 3.4963 -3.5836 -0.0003 13 7 4.1447 -4.8244 0.0018 14 6 3.3603 -6.0607 0.0531 15 6 4.3045 -7.2645 0.0450 16 6 3.4852 -8.5556 0.0979 17 6 4.4153 -9.7413 0.0894 18 1 5.4838 -9.5893 0.0505 19 6 3.9021 -11.0203 0.1321 20 7 2.6009 -11.2056 0.1799 21 14 5.0549 -12.4901 0.1208 22 1 5.4089 -12.8523 1.5168 23 1 4.3830 -13.6412 -0.5340 24 1 6.2892 -12.1453 -0.6293 25 6 2.1120 -3.5148 0.0457 26 7 1.4940 -2.3488 0.0439 27 1 -0.3633 0.0235 1.0275 28 1 -0.3635 0.8779 -0.5341 29 1 -0.3634 -0.9016 -0.4932 30 1 1.2738 1.9342 -2.7734 31 1 3.0131 2.0856 -3.1197 32 1 2.3361 0.5127 -2.6339 33 1 4.0923 -0.2640 -0.0748 34 1 5.3134 -2.4252 -0.0845 35 1 5.1132 -4.8655 -0.0298 36 1 2.7626 -6.0742 0.9645 37 1 2.7016 -6.1092 -0.8141 38 1 4.9025 -7.2511 -0.8661 39 1 4.9627 -7.2157 0.9124 40 1 2.8869 -8.5692 1.0089 41 1 2.8273 -8.6041 -0.7697 42 1 2.2399 -12.1053 0.2104 43 1 1.5332 -4.4258 0.0835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:06 Heat of formation + Delta-G solvation = 173.969868 kcal Electronic energy + Delta-G solvation = -25070.702865 eV Core-core repulsion = 21382.372203 eV Total energy + Delta-G solvation = -3688.330662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.40751 -40.55968 -37.81945 -36.11612 -35.22299 -33.75013 -32.57980 -31.82770 -31.43872 -29.11606 -28.78870 -26.86160 -26.30142 -24.00818 -23.57339 -23.47187 -22.32859 -21.36560 -20.42809 -18.72028 -17.62271 -17.27612 -17.00532 -16.64469 -16.28931 -15.47878 -15.34867 -14.92075 -14.71898 -14.47409 -14.32662 -14.26581 -14.21900 -13.57004 -13.52815 -13.24463 -12.68786 -12.61186 -12.53666 -12.27535 -12.26782 -11.83829 -11.42716 -11.08225 -10.95289 -10.80962 -10.80129 -10.65680 -10.62115 -10.05327 -9.91230 -9.68252 -9.54672 -9.20102 -9.15255 -8.43431 -7.15759 -6.08384 -4.11356 0.46517 1.05881 1.10496 1.38630 1.83306 2.31793 3.26672 3.33363 3.35745 3.50505 3.71570 3.88599 4.25506 4.38901 4.40674 4.45457 4.56298 4.77246 4.80723 4.82100 4.92757 4.93723 4.98334 5.18700 5.27784 5.38329 5.41803 5.46162 5.55047 5.61747 5.69002 5.84139 6.00132 6.19535 6.48566 6.51144 6.53904 6.81667 6.88974 7.28565 7.55045 7.67120 7.68644 7.89877 7.96503 8.06825 8.31400 8.95045 9.53290 11.02830 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.036058 B = 0.001919 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.338838 B =14585.500064 C =14889.214802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.542 5.542 3 C 0.482 3.518 4 N -0.316 5.316 5 N -0.035 5.035 6 N -0.076 5.076 7 N -0.380 5.380 8 C 0.088 3.912 9 C 0.324 3.676 10 C -0.163 4.163 11 C -0.120 4.120 12 C 0.149 3.851 13 N -0.736 5.736 14 C 0.118 3.882 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.067 3.933 26 N -0.475 5.475 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.400 0.600 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 25.208 -5.765 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.263 5.263 3 C 0.116 3.884 4 N -0.172 5.172 5 N -0.031 5.031 6 N -0.063 5.063 7 N -0.182 5.182 8 C -0.055 4.055 9 C 0.092 3.908 10 C -0.187 4.187 11 C -0.151 4.151 12 C 0.040 3.960 13 N -0.365 5.365 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.096 4.096 26 N -0.189 5.189 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.234 0.766 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.456 26.013 -5.105 26.734 hybrid contribution 1.435 -1.529 -0.715 2.216 sum -2.021 24.484 -5.821 25.247 Atomic orbital electron populations 1.21738 0.75267 1.03338 1.02882 1.42092 1.05188 0.97146 1.81901 1.20936 0.94746 0.89029 0.83645 1.75021 1.15409 1.03209 1.23531 1.78140 1.10624 1.10309 1.04074 1.82647 1.14700 1.03560 1.05366 1.52204 1.39074 1.17200 1.09692 1.22223 1.04217 1.03679 0.75334 1.17605 0.87293 0.84613 1.01257 1.21047 0.92593 0.98521 1.06539 1.20804 1.00056 0.90166 1.04069 1.18817 0.93260 0.86860 0.97046 1.44968 1.08592 1.02194 1.80716 1.21687 0.95132 0.82861 1.00827 1.21846 0.98327 0.94641 1.00984 1.19028 0.95130 0.89611 0.97560 1.21194 0.93086 0.90953 1.50935 0.92682 1.25025 0.95071 0.99137 0.95213 1.69952 1.11004 1.21874 1.50429 0.86580 0.80879 0.82273 0.78187 1.20623 1.21173 1.19907 1.22058 0.90178 0.94529 1.02805 1.66787 1.39991 0.96669 1.15407 0.91922 0.92131 0.88517 0.88936 0.87586 0.88266 0.86535 0.84761 0.76569 0.92256 0.92288 0.92737 0.92701 0.96277 0.96300 0.92891 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 10.44 59.84 0.62 1.46 16 2 N -0.54 -5.45 3.13 -124.42 -0.39 -5.84 16 3 C 0.48 5.12 5.95 -320.19 -1.90 3.22 16 4 N -0.32 -4.13 12.19 30.13 0.37 -3.76 16 5 N -0.04 -0.46 13.38 60.35 0.81 0.35 16 6 N -0.08 -0.84 13.93 60.35 0.84 0.00 16 7 N -0.38 -3.33 4.09 -68.62 -0.28 -3.61 16 8 C 0.09 0.37 11.54 59.85 0.69 1.06 16 9 C 0.32 3.77 7.36 -154.67 -1.14 2.63 16 10 C -0.16 -1.84 9.33 -39.25 -0.37 -2.20 16 11 C -0.12 -1.32 10.04 -39.12 -0.39 -1.71 16 12 C 0.15 1.81 6.68 -83.53 -0.56 1.25 16 13 N -0.74 -9.16 5.75 -58.47 -0.34 -9.49 16 14 C 0.12 1.73 4.93 -4.04 -0.02 1.71 16 15 C -0.12 -2.17 5.27 -26.73 -0.14 -2.32 16 16 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 17 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 21 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.07 0.83 10.49 -17.34 -0.18 0.65 16 26 N -0.48 -5.88 9.10 -12.20 -0.11 -5.99 16 27 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 29 H 0.10 0.72 7.36 -51.93 -0.38 0.34 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 1.30 6.98 -52.49 -0.37 0.94 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.40 4.47 8.50 -40.82 -0.35 4.12 16 36 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 37 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.16 1.93 6.75 -52.49 -0.35 1.58 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -31.96 370.09 -7.79 -39.75 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.04 Total: -0.94 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.94 Total: -6.80 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 1.63 Total: -53.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.96 -7.79 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.717 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds