Wall clock time and date at job start Tue Mar 31 2020 12:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35993 * 117.00280 * 2 1 4 4 C 1.38385 * 119.92404 * 0.02562 * 3 2 1 5 5 C 1.38238 * 120.28517 * 179.97438 * 4 3 2 6 6 C 1.38345 * 119.81102 * 0.16717 * 5 4 3 7 7 C 1.37841 * 120.07700 * 359.97438 * 6 5 4 8 8 C 1.38741 * 120.81435 * 359.66262 * 7 6 5 9 9 O 1.36232 * 111.24930 * 181.03943 * 8 7 6 10 10 C 1.43867 * 109.22741 * 340.99783 * 9 8 7 11 11 C 1.51652 * 132.12681 * 179.64681 * 7 6 5 12 12 H 1.09004 * 110.93283 * 313.60535 * 11 7 6 13 13 N 1.46900 * 110.93969 * 77.24685 * 11 7 6 14 14 C 1.46901 * 110.99890 * 201.99850 * 13 11 7 15 15 C 1.53000 * 109.46769 * 204.99887 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 14 18 18 C 1.50706 * 109.46953 * 60.00071 * 17 16 15 19 19 H 1.07998 * 119.99823 * 240.00260 * 18 17 16 20 20 C 1.37879 * 119.99661 * 60.00040 * 18 17 16 21 21 N 1.31510 * 120.00409 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47389 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47057 * 120.00069 * 22 20 18 25 25 H 1.48495 * 109.47216 * 239.99942 * 22 20 18 26 26 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 17 16 28 28 H 1.09001 * 109.46276 * 299.99466 * 1 2 3 29 29 H 1.08994 * 109.47426 * 59.99230 * 1 2 3 30 30 H 1.08993 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.85600 * 359.97429 * 4 3 2 32 32 H 1.08004 * 120.09511 * 180.14419 * 5 4 3 33 33 H 1.08001 * 119.96328 * 179.97438 * 6 5 4 34 34 H 1.09007 * 110.76549 * 269.42005 * 10 9 8 35 35 H 1.09001 * 110.78864 * 146.02322 * 10 9 8 36 36 H 1.00898 * 110.99796 * 325.95628 * 13 11 7 37 37 H 1.08992 * 109.47407 * 325.00184 * 14 13 11 38 38 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 39 39 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 40 40 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 41 41 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 42 42 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 43 43 H 0.96998 * 120.00365 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.46935 * 299.99411 * 26 17 16 45 45 H 1.09001 * 109.46812 * 179.97438 * 26 17 16 46 46 H 1.08993 * 109.47194 * 179.97438 * 27 26 17 47 47 H 1.09002 * 109.46695 * 59.99734 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2913 2.3713 0.0005 5 6 1.9112 3.6069 0.0011 6 6 3.2925 3.6834 -0.0024 7 6 4.0482 2.5306 -0.0059 8 6 3.4414 1.2830 0.0011 9 8 4.3672 0.2837 0.0190 10 6 5.6352 0.8048 -0.4173 11 6 5.5465 2.2965 -0.0171 12 1 6.0339 2.9286 -0.7594 13 7 6.1223 2.5175 1.3162 14 6 7.5596 2.8081 1.2273 15 6 8.2396 2.4250 2.5433 16 6 9.7364 2.7283 2.4510 17 6 9.9389 4.2218 2.1882 18 6 9.3339 5.0170 3.3164 19 1 8.5434 5.7247 3.1149 20 6 9.7896 4.8408 4.6057 21 7 10.7525 3.9793 4.8509 22 14 9.0392 5.8259 6.0042 23 1 7.9809 6.7193 5.4684 24 1 8.4455 4.8982 7.0003 25 1 10.0941 6.6429 6.6560 26 6 9.2588 4.6049 0.8722 27 6 7.7620 4.3017 0.9645 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 0.2130 2.3107 0.0005 32 1 1.3188 4.5100 0.0038 33 1 3.7794 4.6475 -0.0024 34 1 5.7451 0.7004 -1.4968 35 1 6.4559 0.3130 0.1049 36 1 5.6339 3.2537 1.8035 37 1 7.9968 2.2327 0.4114 38 1 7.8023 3.0004 3.3592 39 1 8.0950 1.3610 2.7307 40 1 10.2210 2.4550 3.3883 41 1 10.1740 2.1532 1.6350 42 1 11.0053 4.4378 2.1220 43 1 11.0728 3.8551 5.7580 44 1 9.6964 4.0299 0.0562 45 1 9.4027 5.6691 0.6853 46 1 7.2775 4.5751 0.0272 47 1 7.3245 4.8768 1.7806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:25 Heat of formation + Delta-G solvation = -48.322731 kcal Electronic energy + Delta-G solvation = -27100.275406 eV Core-core repulsion = 23441.260255 eV Total energy + Delta-G solvation = -3659.015151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30685 -39.24802 -38.05687 -36.77545 -34.81037 -32.25737 -30.72434 -30.14243 -29.59428 -28.82947 -27.38003 -27.01340 -24.61858 -23.00829 -22.44610 -21.57452 -20.99391 -20.50189 -18.81641 -17.92700 -17.23941 -16.87548 -16.35670 -15.91940 -15.55203 -15.26119 -14.92398 -14.81537 -14.49713 -14.20258 -13.66549 -13.40539 -13.08573 -13.02692 -12.75763 -12.62844 -12.34718 -12.13912 -11.88417 -11.48646 -11.38174 -11.36261 -11.30086 -11.12367 -10.95788 -10.92071 -10.88556 -10.51549 -10.27337 -10.12541 -9.59370 -9.29689 -8.97103 -8.77375 -8.62670 -8.24917 -7.97959 -7.92294 -5.94298 -3.98660 1.08283 1.30244 3.07709 3.28747 3.31029 3.39938 3.42035 3.52559 4.32842 4.36332 4.46670 4.64923 4.76384 4.87230 4.91025 4.93958 5.13219 5.18807 5.23778 5.33009 5.36652 5.48454 5.52295 5.57099 5.71106 5.74681 5.95717 6.06125 6.16479 6.18947 6.32209 6.45414 6.46279 6.52532 6.60763 6.72388 6.76951 6.82004 6.86677 6.97826 7.19174 7.29905 7.37178 7.57960 7.58622 7.69365 7.77704 7.97391 8.19967 8.51078 9.03546 9.64698 11.11623 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.003151 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.490977 B = 8885.071727 C = 9326.346375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.102 3.898 4 C -0.173 4.173 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.139 4.139 8 C 0.097 3.903 9 O -0.289 6.289 10 C 0.059 3.941 11 C 0.099 3.901 12 H 0.073 0.927 13 N -0.669 5.669 14 C 0.092 3.908 15 C -0.085 4.085 16 C -0.108 4.108 17 C 0.043 3.957 18 C -0.500 4.500 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.883 3.117 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.286 1.286 26 C -0.103 4.103 27 C -0.133 4.133 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.347 0.653 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.023 0.977 43 H 0.258 0.742 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.031 0.969 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.855 -4.398 -12.236 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.057 3.943 4 C -0.192 4.192 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.141 4.141 8 C 0.051 3.949 9 O -0.202 6.202 10 C -0.017 4.017 11 C -0.011 4.011 12 H 0.091 0.909 13 N -0.300 5.300 14 C -0.017 4.017 15 C -0.123 4.123 16 C -0.146 4.146 17 C 0.024 3.976 18 C -0.538 4.538 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.712 3.288 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.141 4.141 27 C -0.172 4.172 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.584 -5.580 -11.894 21.950 hybrid contribution -0.571 1.773 0.500 1.928 sum -18.154 -3.807 -11.394 21.769 Atomic orbital electron populations 1.23037 0.78740 1.03872 1.01108 1.86178 1.20947 1.26286 1.89246 1.18185 0.88185 0.85221 1.02753 1.20932 0.99741 0.91476 1.07076 1.20776 0.94024 0.96969 1.01498 1.20291 0.93297 0.97196 1.00852 1.20673 0.95242 0.92820 1.05348 1.18692 0.87905 0.87908 1.00430 1.86931 1.18301 1.32872 1.82134 1.23957 0.85106 0.93370 0.99223 1.21661 0.89588 0.96335 0.93563 0.90915 1.60871 1.04250 1.50540 1.14336 1.21742 0.85672 0.94658 0.99630 1.21301 0.96707 0.98782 0.95525 1.21526 0.93760 0.97978 1.01357 1.18704 0.95525 0.92583 0.90754 1.21148 1.19237 1.21687 0.91757 0.92826 1.24927 0.95050 0.95314 0.98620 1.69870 1.27802 1.35090 1.20160 0.86677 0.79149 0.80182 0.82831 1.19956 1.21102 1.21238 1.21497 0.94250 0.99128 0.99204 1.22098 0.98522 0.96951 0.99596 0.92735 0.92824 0.88327 0.84798 0.85234 0.85583 0.90697 0.86769 0.83375 0.91900 0.91114 0.94252 0.88967 0.96879 0.95859 0.93210 0.94901 0.93703 0.95005 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.99 10.50 -19.73 -0.21 -4.20 16 3 C 0.10 1.35 6.71 -38.99 -0.26 1.09 16 4 C -0.17 -1.82 9.01 -39.53 -0.36 -2.18 16 5 C -0.11 -1.16 10.06 -39.54 -0.40 -1.56 16 6 C -0.10 -1.14 10.03 -39.69 -0.40 -1.53 16 7 C -0.14 -1.88 5.66 -104.11 -0.59 -2.47 16 8 C 0.10 1.44 6.97 -38.86 -0.27 1.17 16 9 O -0.29 -4.57 11.11 -20.49 -0.23 -4.80 16 10 C 0.06 0.78 7.72 38.05 0.29 1.08 16 11 C 0.10 1.34 3.17 -67.50 -0.21 1.13 16 12 H 0.07 0.94 7.24 -51.93 -0.38 0.56 16 13 N -0.67 -10.51 6.09 -99.51 -0.61 -11.12 16 14 C 0.09 1.58 2.35 -67.71 -0.16 1.42 16 15 C -0.09 -1.75 5.31 -26.73 -0.14 -1.90 16 16 C -0.11 -2.47 5.23 -26.73 -0.14 -2.61 16 17 C 0.04 1.02 2.59 -91.77 -0.24 0.79 16 18 C -0.50 -13.04 6.61 -34.44 -0.23 -13.26 16 19 H 0.05 1.40 6.71 -52.49 -0.35 1.04 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 22 Si 0.88 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.10 -2.05 5.41 -26.73 -0.14 -2.19 16 27 C -0.13 -2.37 4.93 -26.73 -0.13 -2.50 16 28 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 29 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.13 1.02 6.26 -52.49 -0.33 0.69 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.51 8.10 -51.93 -0.42 1.09 16 36 H 0.35 5.52 8.20 -39.29 -0.32 5.20 16 37 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 38 H 0.07 1.63 7.22 -51.93 -0.37 1.26 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.50 7.49 -51.93 -0.39 0.11 16 47 H 0.07 1.42 6.60 -51.93 -0.34 1.08 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -29.61 365.23 -9.77 -39.38 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.36 Total: 4.32 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -2.48 Total: -20.77 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.02 Total: -35.48 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.43 Total: -9.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.61 -9.77 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.941 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds