Wall clock time and date at job start Tue Mar 31 2020 12:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35993 * 117.00280 * 2 1 4 4 C 1.38385 * 119.92404 * 0.02562 * 3 2 1 5 5 C 1.38238 * 120.28517 * 179.97438 * 4 3 2 6 6 C 1.38345 * 119.81102 * 0.16717 * 5 4 3 7 7 C 1.37841 * 120.07700 * 359.97438 * 6 5 4 8 8 C 1.38741 * 120.81435 * 359.66262 * 7 6 5 9 9 O 1.36232 * 111.24930 * 181.03943 * 8 7 6 10 10 C 1.43867 * 109.22741 * 340.99783 * 9 8 7 11 11 C 1.51652 * 132.12681 * 179.64681 * 7 6 5 12 12 H 1.09004 * 110.93283 * 313.60535 * 11 7 6 13 13 N 1.46900 * 110.93969 * 77.24685 * 11 7 6 14 14 C 1.46901 * 110.99890 * 201.99850 * 13 11 7 15 15 C 1.53000 * 109.46769 * 204.99887 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 14 18 18 C 1.50706 * 109.46953 * 60.00071 * 17 16 15 19 19 H 1.07998 * 119.99823 * 240.00260 * 18 17 16 20 20 C 1.37879 * 119.99661 * 60.00040 * 18 17 16 21 21 N 1.31510 * 120.00409 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47389 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47057 * 120.00069 * 22 20 18 25 25 H 1.48495 * 109.47216 * 239.99942 * 22 20 18 26 26 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 17 16 28 28 H 1.09001 * 109.46276 * 299.99466 * 1 2 3 29 29 H 1.08994 * 109.47426 * 59.99230 * 1 2 3 30 30 H 1.08993 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.85600 * 359.97429 * 4 3 2 32 32 H 1.08004 * 120.09511 * 180.14419 * 5 4 3 33 33 H 1.08001 * 119.96328 * 179.97438 * 6 5 4 34 34 H 1.09007 * 110.76549 * 269.42005 * 10 9 8 35 35 H 1.09001 * 110.78864 * 146.02322 * 10 9 8 36 36 H 1.00898 * 110.99796 * 325.95628 * 13 11 7 37 37 H 1.08992 * 109.47407 * 325.00184 * 14 13 11 38 38 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 39 39 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 40 40 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 41 41 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 42 42 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 43 43 H 0.96998 * 120.00365 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.46935 * 299.99411 * 26 17 16 45 45 H 1.09001 * 109.46812 * 179.97438 * 26 17 16 46 46 H 1.08993 * 109.47194 * 179.97438 * 27 26 17 47 47 H 1.09002 * 109.46695 * 59.99734 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2913 2.3713 0.0005 5 6 1.9112 3.6069 0.0011 6 6 3.2925 3.6834 -0.0024 7 6 4.0482 2.5306 -0.0059 8 6 3.4414 1.2830 0.0011 9 8 4.3672 0.2837 0.0190 10 6 5.6352 0.8048 -0.4173 11 6 5.5465 2.2965 -0.0171 12 1 6.0339 2.9286 -0.7594 13 7 6.1223 2.5175 1.3162 14 6 7.5596 2.8081 1.2273 15 6 8.2396 2.4250 2.5433 16 6 9.7364 2.7283 2.4510 17 6 9.9389 4.2218 2.1882 18 6 9.3339 5.0170 3.3164 19 1 8.5434 5.7247 3.1149 20 6 9.7896 4.8408 4.6057 21 7 10.7525 3.9793 4.8509 22 14 9.0392 5.8259 6.0042 23 1 7.9809 6.7193 5.4684 24 1 8.4455 4.8982 7.0003 25 1 10.0941 6.6429 6.6560 26 6 9.2588 4.6049 0.8722 27 6 7.7620 4.3017 0.9645 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 0.2130 2.3107 0.0005 32 1 1.3188 4.5100 0.0038 33 1 3.7794 4.6475 -0.0024 34 1 5.7451 0.7004 -1.4968 35 1 6.4559 0.3130 0.1049 36 1 5.6339 3.2537 1.8035 37 1 7.9968 2.2327 0.4114 38 1 7.8023 3.0004 3.3592 39 1 8.0950 1.3610 2.7307 40 1 10.2210 2.4550 3.3883 41 1 10.1740 2.1532 1.6350 42 1 11.0053 4.4378 2.1220 43 1 11.0728 3.8551 5.7580 44 1 9.6964 4.0299 0.0562 45 1 9.4027 5.6691 0.6853 46 1 7.2775 4.5751 0.0272 47 1 7.3245 4.8768 1.7806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:24 Heat of formation + Delta-G solvation = -66.168592 kcal Electronic energy + Delta-G solvation = -27101.049261 eV Core-core repulsion = 23441.260255 eV Total energy + Delta-G solvation = -3659.789006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25719 -40.18960 -39.55264 -37.64356 -36.25480 -34.05368 -32.00472 -31.23206 -30.98074 -29.96034 -28.46115 -28.02479 -26.51730 -24.00935 -23.41162 -23.08414 -22.19171 -21.84231 -20.54307 -18.89027 -18.16501 -17.92197 -17.66443 -17.20924 -16.81629 -16.48715 -16.31811 -15.83270 -15.61912 -15.38865 -15.14213 -14.91342 -14.58657 -14.10937 -13.87363 -13.75248 -13.47942 -13.45471 -13.14975 -12.89140 -12.79894 -12.77476 -12.58160 -12.36282 -12.22837 -12.18034 -12.06717 -11.98546 -11.80610 -11.80234 -11.39217 -11.02604 -10.73333 -10.52120 -10.28750 -9.70475 -9.22152 -8.84037 -8.01206 -6.10754 0.20489 0.42111 1.39537 1.43224 1.51679 2.30049 2.40679 2.46684 2.62983 3.23199 3.27647 3.35697 3.76650 3.96018 4.00003 4.04482 4.18273 4.24851 4.33489 4.36811 4.41967 4.42838 4.48256 4.59456 4.61239 4.72146 4.74456 4.78849 4.82735 4.92197 4.97584 5.05492 5.06026 5.22619 5.24279 5.33643 5.44576 5.47354 5.49428 5.65144 5.67568 5.70480 5.78457 5.90800 5.98337 6.16229 6.29032 6.40752 6.49744 6.52753 6.99794 7.55131 9.03684 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.003151 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.490977 B = 8885.071727 C = 9326.346375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.086 3.914 4 C -0.168 4.168 5 C -0.106 4.106 6 C -0.106 4.106 7 C -0.148 4.148 8 C 0.060 3.940 9 O -0.317 6.317 10 C 0.056 3.944 11 C 0.102 3.898 12 H 0.087 0.913 13 N -0.675 5.675 14 C 0.106 3.894 15 C -0.076 4.076 16 C -0.103 4.103 17 C 0.037 3.963 18 C -0.501 4.501 19 H 0.053 0.947 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.939 3.061 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.286 1.286 26 C -0.098 4.098 27 C -0.123 4.123 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.345 0.655 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.028 0.972 42 H -0.013 1.013 43 H 0.256 0.744 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.572 -3.322 -13.768 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.041 3.959 4 C -0.187 4.187 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.150 4.150 8 C 0.014 3.986 9 O -0.232 6.232 10 C -0.019 4.019 11 C -0.008 4.008 12 H 0.105 0.895 13 N -0.305 5.305 14 C -0.003 4.003 15 C -0.114 4.114 16 C -0.141 4.141 17 C 0.018 3.982 18 C -0.539 4.539 19 H 0.071 0.929 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.212 1.212 26 C -0.136 4.136 27 C -0.162 4.162 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.182 0.818 32 H 0.180 0.820 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.164 0.836 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.005 0.995 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.322 -4.496 -13.439 24.775 hybrid contribution 0.202 1.415 0.957 1.720 sum -20.120 -3.081 -12.482 23.877 Atomic orbital electron populations 1.23351 0.76322 1.05473 1.02456 1.86136 1.23589 1.26627 1.89329 1.18532 0.88106 0.86286 1.03020 1.21321 1.01175 0.90665 1.05524 1.21213 0.93744 0.98078 0.99405 1.20591 0.94099 0.97163 1.00596 1.20740 0.94961 0.93096 1.06160 1.19095 0.88706 0.88174 1.02637 1.86869 1.19290 1.34112 1.82923 1.24076 0.84316 0.93033 1.00469 1.21674 0.90012 0.96728 0.92360 0.89499 1.60747 1.03230 1.50441 1.16123 1.21471 0.86650 0.94503 0.97704 1.21131 0.95214 0.98303 0.96776 1.21371 0.95279 0.97508 0.99971 1.18708 0.93706 0.93068 0.92677 1.21421 1.18708 1.21359 0.92451 0.92862 1.25615 0.95619 0.96343 1.00947 1.70016 1.29144 1.36522 1.20327 0.85785 0.78505 0.78916 0.80151 1.18980 1.21323 1.21216 1.21402 0.95558 0.99407 0.97244 1.21993 0.96816 0.96874 1.00504 0.91596 0.91082 0.86827 0.81788 0.81972 0.84141 0.88460 0.87368 0.83553 0.90444 0.94032 0.94167 0.92657 0.95353 0.99461 0.93510 0.92973 0.93725 0.91761 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.44 10.50 -93.46 -0.98 -9.42 16 3 C 0.09 2.16 6.71 22.65 0.15 2.32 16 4 C -0.17 -3.04 9.01 22.30 0.20 -2.84 16 5 C -0.11 -1.79 10.06 22.30 0.22 -1.57 16 6 C -0.11 -2.17 10.03 22.20 0.22 -1.95 16 7 C -0.15 -3.76 5.66 -19.53 -0.11 -3.87 16 8 C 0.06 1.74 6.97 22.74 0.16 1.89 16 9 O -0.32 -10.08 11.11 -96.19 -1.07 -11.15 16 10 C 0.06 1.44 7.72 72.56 0.56 2.00 16 11 C 0.10 2.59 3.17 45.05 0.14 2.73 16 12 H 0.09 1.96 7.24 -2.38 -0.02 1.94 16 13 N -0.67 -20.33 6.09 -468.76 -2.86 -23.19 16 14 C 0.11 3.49 2.35 44.92 0.11 3.60 16 15 C -0.08 -3.15 5.31 30.59 0.16 -2.99 16 16 C -0.10 -4.79 5.23 30.59 0.16 -4.63 16 17 C 0.04 1.79 2.59 -11.54 -0.03 1.76 16 18 C -0.50 -26.47 6.61 25.60 0.17 -26.30 16 19 H 0.05 2.77 6.71 -2.91 -0.02 2.75 16 20 C 0.01 0.68 5.30 84.66 0.45 1.13 16 21 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 22 Si 0.94 43.79 29.54 68.60 2.03 45.81 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 C -0.10 -3.77 5.41 30.60 0.17 -3.61 16 27 C -0.12 -4.12 4.93 30.59 0.15 -3.97 16 28 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 29 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.16 1.84 6.26 -2.91 -0.02 1.82 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.11 2.80 8.10 -2.39 -0.02 2.78 16 36 H 0.35 10.58 8.20 -89.70 -0.74 9.84 16 37 H 0.08 2.38 7.85 -2.39 -0.02 2.36 16 38 H 0.04 1.95 7.22 -2.39 -0.02 1.93 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.77 7.49 -2.39 -0.02 1.76 16 47 H 0.05 2.02 6.60 -2.39 -0.02 2.00 16 Total: -1.00 -66.45 365.23 1.59 -64.86 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.24 Total: 21.13 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.00 Total: -34.95 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.61 Total: -76.28 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -2.05 Total: -20.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -66.45 1.59 -64.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.310 kcal (2) G-P(sol) polarization free energy of solvation -66.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds