Wall clock time and date at job start Tue Mar 31 2020 11:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20832 * 120.00584 * 2 1 4 4 O 1.34273 * 119.99570 * 180.02562 * 2 1 3 5 5 C 1.35924 * 116.99552 * 184.92912 * 4 2 1 6 6 C 1.38732 * 120.05529 * 257.50752 * 5 4 2 7 7 C 1.38145 * 119.94383 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05604 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.94566 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46740 * 120.00298 * 9 8 7 11 11 C 1.53004 * 109.46888 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46477 * 299.99814 * 11 10 9 13 13 N 1.46501 * 109.47013 * 299.99693 * 12 11 10 14 14 C 1.46492 * 120.00299 * 323.26141 * 13 12 11 15 15 C 1.36938 * 119.99695 * 143.26398 * 13 12 11 16 16 H 1.08003 * 120.00378 * 35.54476 * 15 13 12 17 17 C 1.38810 * 119.99876 * 215.54163 * 15 13 12 18 18 N 1.31619 * 120.00074 * 10.59129 * 17 15 13 19 19 Si 1.86802 * 120.00107 * 190.58471 * 17 15 13 20 20 H 1.48504 * 109.47111 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47041 * 120.00043 * 19 17 15 22 22 H 1.48494 * 109.47320 * 240.00148 * 19 17 15 23 23 C 1.52996 * 109.47396 * 60.00032 * 12 11 10 24 24 C 1.52996 * 109.47308 * 299.99691 * 23 12 11 25 25 C 1.38272 * 120.10971 * 0.25371 * 8 7 6 26 26 C 1.38141 * 120.05586 * 359.45209 * 25 8 7 27 27 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46715 * 300.00112 * 1 2 3 29 29 H 1.08996 * 109.47588 * 59.99365 * 1 2 3 30 30 H 1.08000 * 120.03043 * 0.05155 * 6 5 4 31 31 H 1.08000 * 119.97229 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47102 * 0.02562 * 9 8 7 33 33 H 1.08996 * 109.47371 * 60.00106 * 10 9 8 34 34 H 1.09000 * 109.47258 * 299.99726 * 10 9 8 35 35 H 1.09000 * 109.47003 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47273 * 59.99186 * 11 10 9 37 37 H 1.09005 * 109.47079 * 180.02562 * 12 11 10 38 38 H 1.09007 * 109.47330 * 92.29175 * 14 13 12 39 39 H 1.09005 * 109.47513 * 212.29254 * 14 13 12 40 40 H 1.09003 * 109.47552 * 332.29516 * 14 13 12 41 41 H 0.96997 * 120.00120 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46733 * 60.00090 * 23 12 11 43 43 H 1.09008 * 109.46921 * 179.97438 * 23 12 11 44 44 H 1.09000 * 109.47030 * 179.97438 * 24 23 12 45 45 H 1.08996 * 109.47223 * 300.00016 * 24 23 12 46 46 H 1.08003 * 119.96724 * 179.70492 * 25 8 7 47 47 H 1.08001 * 120.02956 * 180.25112 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1629 -0.0005 5 6 3.5317 -1.0940 0.1036 6 6 4.3248 -1.2671 -1.0215 7 6 5.7002 -1.1972 -0.9129 8 6 6.2865 -0.9555 0.3157 9 6 7.7872 -0.8803 0.4314 10 6 8.1896 0.4988 0.9579 11 6 9.7133 0.5754 1.0747 12 6 10.2054 -0.5033 2.0418 13 7 9.6031 -0.2889 3.3599 14 6 9.3924 1.0732 3.8563 15 6 9.2371 -1.3618 4.1281 16 1 9.8307 -2.2639 4.1137 17 6 8.1031 -1.2898 4.9255 18 7 7.2670 -0.2823 4.7911 19 14 7.7637 -2.6231 6.1891 20 1 8.8480 -3.6368 6.1425 21 1 7.7100 -2.0184 7.5444 22 1 6.4639 -3.2736 5.8854 23 6 9.8029 -1.8823 1.5154 24 6 8.2793 -1.9589 1.3985 25 6 5.4985 -0.7884 1.4395 26 6 4.1224 -0.8513 1.3352 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.8674 -1.4560 -1.9814 31 1 6.3181 -1.3315 -1.7885 32 1 8.2356 -1.0395 -0.5492 33 1 7.7412 0.6584 1.9384 34 1 7.8394 1.2672 0.2687 35 1 10.0000 1.5580 1.4493 36 1 10.1614 0.4159 0.0940 37 1 11.2908 -0.4485 2.1254 38 1 8.3909 1.4077 3.5857 39 1 9.4989 1.0853 4.9410 40 1 10.1307 1.7404 3.4113 41 1 6.4744 -0.2322 5.3481 42 1 10.2511 -2.0417 0.5346 43 1 10.1539 -2.6508 2.2042 44 1 7.9927 -2.9412 1.0230 45 1 7.8312 -1.7994 2.3792 46 1 5.9590 -0.6044 2.3989 47 1 3.5072 -0.7167 2.2125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173789687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:39 Heat of formation + Delta-G solvation = -43.267621 kcal Electronic energy + Delta-G solvation = -27778.327952 eV Core-core repulsion = 24119.532007 eV Total energy + Delta-G solvation = -3658.795945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.16261 -39.29922 -37.88843 -36.64145 -34.09156 -31.90469 -30.79124 -30.65115 -30.22255 -29.61595 -27.37458 -25.53450 -23.73103 -22.69957 -22.48617 -21.73072 -20.99702 -19.84300 -18.27932 -18.10548 -16.90752 -16.54705 -16.25323 -15.66934 -15.04422 -14.57973 -14.40139 -14.35233 -13.76224 -13.50512 -13.41440 -13.18128 -13.09220 -12.86100 -12.74544 -12.46264 -12.21966 -11.94744 -11.66697 -11.44096 -11.37661 -11.13854 -11.04519 -10.89380 -10.78961 -10.64992 -10.48030 -10.41986 -10.16750 -9.97030 -9.79431 -9.58867 -9.31789 -9.14213 -8.65405 -8.39692 -8.14195 -6.46618 -5.68833 -3.26555 1.35121 1.69063 2.07255 2.87680 3.36444 3.45914 3.46844 4.06107 4.50908 4.62980 4.94551 5.00828 5.05285 5.17268 5.26635 5.40508 5.41986 5.45352 5.59312 5.66224 5.78409 5.83998 5.91194 6.02472 6.12285 6.19463 6.31880 6.34301 6.39241 6.40953 6.45513 6.56101 6.60439 6.64292 6.74628 6.78692 6.85521 6.97248 7.09976 7.11881 7.16804 7.25875 7.32109 7.34867 7.66439 7.76598 7.84959 7.87112 8.52446 9.29242 9.90173 10.48715 11.31030 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.004359 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.482500 B = 6421.805182 C = 7444.319782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.450 3.550 3 O -0.495 6.495 4 O -0.295 6.295 5 C 0.061 3.939 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.057 4.057 9 C -0.040 4.040 10 C -0.107 4.107 11 C -0.125 4.125 12 C 0.174 3.826 13 N -0.591 5.591 14 C 0.157 3.843 15 C -0.243 4.243 16 H 0.060 0.940 17 C 0.014 3.986 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C -0.103 4.103 24 C -0.111 4.111 25 C -0.085 4.085 26 C -0.119 4.119 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.033 0.967 39 H 0.031 0.969 40 H -0.001 1.001 41 H 0.251 0.749 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.115 0.885 46 H 0.159 0.841 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -0.832 -11.127 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.293 3.707 3 O -0.380 6.380 4 O -0.211 6.211 5 C 0.021 3.979 6 C -0.143 4.143 7 C -0.131 4.131 8 C -0.057 4.057 9 C -0.058 4.058 10 C -0.144 4.144 11 C -0.164 4.164 12 C 0.068 3.932 13 N -0.316 5.316 14 C 0.012 3.988 15 C -0.373 4.373 16 H 0.078 0.922 17 C -0.185 4.185 18 N -0.541 5.541 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.103 4.103 26 C -0.138 4.138 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.133 0.867 46 H 0.176 0.824 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.196 -0.461 -11.054 13.769 hybrid contribution -0.367 -0.660 0.695 1.026 sum -8.562 -1.121 -10.359 13.487 Atomic orbital electron populations 1.21578 0.86701 1.05831 1.05892 1.24271 0.92043 0.81780 0.72560 1.90741 1.70613 1.32655 1.43979 1.84613 1.18734 1.34601 1.83151 1.18476 0.79763 1.05546 0.94123 1.20940 0.93876 1.02525 0.96924 1.20907 0.93482 1.01106 0.97578 1.20205 0.96681 0.96240 0.92611 1.20156 0.89084 0.97525 0.99066 1.21589 0.95961 0.94100 1.02752 1.21938 0.96155 0.99821 0.98506 1.20432 0.94227 0.92693 0.85868 1.43818 1.72499 1.02406 1.12870 1.20768 0.96845 0.84518 0.96677 1.18949 1.04147 0.94903 1.19345 0.92246 1.25185 0.95420 0.97278 1.00634 1.69960 1.12522 1.31195 1.40446 0.86441 0.77865 0.82027 0.81822 1.20341 1.21781 1.21693 1.21544 0.96119 0.98162 0.98314 1.21680 0.96161 0.94979 1.01995 1.21486 0.92017 0.96119 1.00694 1.21276 0.96070 1.00326 0.96111 0.88960 0.87557 0.87719 0.86013 0.85772 0.92261 0.88424 0.94265 0.92641 0.93572 0.96657 0.94933 0.95016 0.98276 0.93882 0.94287 0.91875 0.94528 0.86707 0.82390 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 10.42 36.00 0.38 -0.66 16 2 C 0.45 5.99 7.93 36.00 0.29 6.28 16 3 O -0.49 -8.59 16.76 -18.75 -0.31 -8.90 16 4 O -0.30 -4.34 10.02 -23.64 -0.24 -4.57 16 5 C 0.06 1.03 5.04 -39.22 -0.20 0.83 16 6 C -0.12 -1.91 9.99 -39.43 -0.39 -2.31 16 7 C -0.11 -1.75 9.66 -39.61 -0.38 -2.14 16 8 C -0.06 -1.02 4.78 -104.60 -0.50 -1.52 16 9 C -0.04 -0.70 2.36 -91.77 -0.22 -0.92 16 10 C -0.11 -2.00 4.80 -26.73 -0.13 -2.13 16 11 C -0.13 -2.26 5.00 -26.73 -0.13 -2.39 16 12 C 0.17 3.50 3.39 -67.93 -0.23 3.27 16 13 N -0.59 -13.74 2.41 -173.48 -0.42 -14.16 16 14 C 0.16 3.64 7.68 59.84 0.46 4.10 16 15 C -0.24 -6.12 6.49 -15.06 -0.10 -6.22 16 16 H 0.06 1.53 6.80 -52.48 -0.36 1.17 16 17 C 0.01 0.36 4.70 -17.43 -0.08 0.28 16 18 N -0.90 -23.61 11.39 55.49 0.63 -22.98 16 19 Si 0.89 20.87 29.57 -169.99 -5.03 15.84 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.10 -1.95 4.96 -26.74 -0.13 -2.08 16 24 C -0.11 -2.15 4.73 -26.73 -0.13 -2.28 16 25 C -0.09 -1.65 8.70 -39.60 -0.34 -2.00 16 26 C -0.12 -2.16 9.77 -39.43 -0.39 -2.55 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.12 1.61 7.94 -52.49 -0.42 1.19 16 32 H 0.06 0.95 7.87 -51.93 -0.41 0.54 16 33 H 0.10 2.17 5.11 -51.93 -0.27 1.90 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.00 6.69 -51.93 -0.35 0.65 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.03 0.81 5.91 -51.93 -0.31 0.50 16 39 H 0.03 0.78 7.88 -51.93 -0.41 0.38 16 40 H 0.00 -0.03 6.95 -51.93 -0.36 -0.39 16 41 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.26 6.80 -51.92 -0.35 0.90 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.11 2.65 4.81 -51.93 -0.25 2.40 16 46 H 0.16 3.50 7.07 -52.48 -0.37 3.13 16 47 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -28.77 365.26 -9.30 -38.07 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.21 Total: 3.63 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.23 Total: -12.44 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.21 Total: -37.14 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.55 Total: -13.47 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.77 -9.30 -38.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173789687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.201 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds