Wall clock time and date at job start Tue Mar 31 2020 11:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20832 * 120.00584 * 2 1 4 4 O 1.34273 * 119.99570 * 180.02562 * 2 1 3 5 5 C 1.35924 * 116.99552 * 184.92912 * 4 2 1 6 6 C 1.38732 * 120.05529 * 257.50752 * 5 4 2 7 7 C 1.38145 * 119.94383 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05604 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.94566 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46740 * 120.00298 * 9 8 7 11 11 C 1.53004 * 109.46888 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46477 * 299.99814 * 11 10 9 13 13 N 1.46501 * 109.47013 * 299.99693 * 12 11 10 14 14 C 1.46492 * 120.00299 * 323.26141 * 13 12 11 15 15 C 1.36938 * 119.99695 * 143.26398 * 13 12 11 16 16 H 1.08003 * 120.00378 * 35.54476 * 15 13 12 17 17 C 1.38810 * 119.99876 * 215.54163 * 15 13 12 18 18 N 1.31619 * 120.00074 * 10.59129 * 17 15 13 19 19 Si 1.86802 * 120.00107 * 190.58471 * 17 15 13 20 20 H 1.48504 * 109.47111 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47041 * 120.00043 * 19 17 15 22 22 H 1.48494 * 109.47320 * 240.00148 * 19 17 15 23 23 C 1.52996 * 109.47396 * 60.00032 * 12 11 10 24 24 C 1.52996 * 109.47308 * 299.99691 * 23 12 11 25 25 C 1.38272 * 120.10971 * 0.25371 * 8 7 6 26 26 C 1.38141 * 120.05586 * 359.45209 * 25 8 7 27 27 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46715 * 300.00112 * 1 2 3 29 29 H 1.08996 * 109.47588 * 59.99365 * 1 2 3 30 30 H 1.08000 * 120.03043 * 0.05155 * 6 5 4 31 31 H 1.08000 * 119.97229 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47102 * 0.02562 * 9 8 7 33 33 H 1.08996 * 109.47371 * 60.00106 * 10 9 8 34 34 H 1.09000 * 109.47258 * 299.99726 * 10 9 8 35 35 H 1.09000 * 109.47003 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47273 * 59.99186 * 11 10 9 37 37 H 1.09005 * 109.47079 * 180.02562 * 12 11 10 38 38 H 1.09007 * 109.47330 * 92.29175 * 14 13 12 39 39 H 1.09005 * 109.47513 * 212.29254 * 14 13 12 40 40 H 1.09003 * 109.47552 * 332.29516 * 14 13 12 41 41 H 0.96997 * 120.00120 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46733 * 60.00090 * 23 12 11 43 43 H 1.09008 * 109.46921 * 179.97438 * 23 12 11 44 44 H 1.09000 * 109.47030 * 179.97438 * 24 23 12 45 45 H 1.08996 * 109.47223 * 300.00016 * 24 23 12 46 46 H 1.08003 * 119.96724 * 179.70492 * 25 8 7 47 47 H 1.08001 * 120.02956 * 180.25112 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1629 -0.0005 5 6 3.5317 -1.0940 0.1036 6 6 4.3248 -1.2671 -1.0215 7 6 5.7002 -1.1972 -0.9129 8 6 6.2865 -0.9555 0.3157 9 6 7.7872 -0.8803 0.4314 10 6 8.1896 0.4988 0.9579 11 6 9.7133 0.5754 1.0747 12 6 10.2054 -0.5033 2.0418 13 7 9.6031 -0.2889 3.3599 14 6 9.3924 1.0732 3.8563 15 6 9.2371 -1.3618 4.1281 16 1 9.8307 -2.2639 4.1137 17 6 8.1031 -1.2898 4.9255 18 7 7.2670 -0.2823 4.7911 19 14 7.7637 -2.6231 6.1891 20 1 8.8480 -3.6368 6.1425 21 1 7.7100 -2.0184 7.5444 22 1 6.4639 -3.2736 5.8854 23 6 9.8029 -1.8823 1.5154 24 6 8.2793 -1.9589 1.3985 25 6 5.4985 -0.7884 1.4395 26 6 4.1224 -0.8513 1.3352 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.8674 -1.4560 -1.9814 31 1 6.3181 -1.3315 -1.7885 32 1 8.2356 -1.0395 -0.5492 33 1 7.7412 0.6584 1.9384 34 1 7.8394 1.2672 0.2687 35 1 10.0000 1.5580 1.4493 36 1 10.1614 0.4159 0.0940 37 1 11.2908 -0.4485 2.1254 38 1 8.3909 1.4077 3.5857 39 1 9.4989 1.0853 4.9410 40 1 10.1307 1.7404 3.4113 41 1 6.4744 -0.2322 5.3481 42 1 10.2511 -2.0417 0.5346 43 1 10.1539 -2.6508 2.2042 44 1 7.9927 -2.9412 1.0230 45 1 7.8312 -1.7994 2.3792 46 1 5.9590 -0.6044 2.3989 47 1 3.5072 -0.7167 2.2125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173789687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:38 Heat of formation + Delta-G solvation = -55.922326 kcal Electronic energy + Delta-G solvation = -27778.876701 eV Core-core repulsion = 24119.532007 eV Total energy + Delta-G solvation = -3659.344694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.32635 -40.70761 -39.29637 -37.90863 -35.78810 -33.57055 -32.05708 -31.96599 -31.61849 -30.97316 -28.79451 -27.46332 -25.21560 -24.09161 -23.94054 -23.23059 -22.32233 -21.25091 -19.86291 -19.29467 -18.25732 -17.94878 -17.65482 -17.13035 -16.68102 -16.03512 -15.87435 -15.56246 -15.47104 -15.15153 -14.80166 -14.51152 -14.30446 -14.10698 -13.89638 -13.56116 -13.44650 -13.42640 -13.11130 -12.98308 -12.92775 -12.81784 -12.64589 -12.55208 -12.45932 -12.29341 -11.99083 -11.82579 -11.78021 -11.66163 -11.48576 -11.18840 -10.80907 -10.69693 -10.35714 -9.97590 -9.47654 -8.38930 -7.66732 -5.25546 0.06759 0.37183 1.03221 1.42879 1.48575 1.54109 1.82974 2.55685 2.75416 3.42454 3.66095 3.70374 3.84588 3.88646 3.93238 4.12174 4.23512 4.38056 4.42956 4.43977 4.51369 4.54629 4.68364 4.70810 4.72059 4.84267 4.85799 4.90955 4.93944 4.97605 5.03722 5.07908 5.15218 5.22128 5.26782 5.33366 5.37567 5.48321 5.52412 5.57217 5.64239 5.66854 5.75409 5.84863 5.89066 5.96930 6.10987 6.53621 6.73396 7.31902 8.01568 8.53722 9.29951 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.004359 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.482500 B = 6421.805182 C = 7444.319782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.447 3.553 3 O -0.542 6.542 4 O -0.295 6.295 5 C 0.056 3.944 6 C -0.122 4.122 7 C -0.102 4.102 8 C -0.070 4.070 9 C -0.031 4.031 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.165 3.835 13 N -0.600 5.600 14 C 0.172 3.828 15 C -0.236 4.236 16 H 0.054 0.946 17 C -0.024 4.024 18 N -0.913 5.913 19 Si 0.933 3.067 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.297 1.297 23 C -0.098 4.098 24 C -0.108 4.108 25 C -0.104 4.104 26 C -0.140 4.140 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.011 0.989 39 H 0.004 0.996 40 H 0.023 0.977 41 H 0.242 0.758 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.119 0.881 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 -1.612 -14.450 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.293 3.707 3 O -0.430 6.430 4 O -0.211 6.211 5 C 0.015 3.985 6 C -0.140 4.140 7 C -0.119 4.119 8 C -0.070 4.070 9 C -0.049 4.049 10 C -0.139 4.139 11 C -0.156 4.156 12 C 0.060 3.940 13 N -0.325 5.325 14 C 0.027 3.973 15 C -0.367 4.367 16 H 0.072 0.928 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.225 1.225 22 H -0.225 1.225 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.122 4.122 26 C -0.159 4.159 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.180 0.820 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.137 0.863 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.351 -1.261 -14.384 16.680 hybrid contribution -0.352 -0.411 1.708 1.792 sum -8.704 -1.672 -12.675 15.467 Atomic orbital electron populations 1.21792 0.81629 1.07956 1.07594 1.25549 0.94018 0.80517 0.70584 1.90725 1.71887 1.34024 1.46366 1.84642 1.17709 1.35606 1.83129 1.18632 0.81072 1.04826 0.93933 1.21347 0.93911 1.01056 0.97669 1.21267 0.93959 0.99107 0.97597 1.20277 0.96682 0.97066 0.92979 1.20094 0.89170 0.95906 0.99767 1.21468 0.96372 0.95313 1.00773 1.21860 0.95470 0.98729 0.99501 1.20650 0.94180 0.94400 0.84757 1.43959 1.72334 1.01720 1.14457 1.20513 0.96429 0.85326 0.95068 1.18982 1.03531 0.95030 1.19197 0.92808 1.25618 0.95680 0.98606 1.02201 1.70096 1.12554 1.32387 1.40841 0.85725 0.77370 0.80593 0.79938 1.19557 1.22535 1.22479 1.21509 0.95735 0.96728 0.99659 1.21542 0.96389 0.96099 1.00473 1.21210 0.92756 0.98217 1.00046 1.21273 0.95764 1.01807 0.97012 0.86673 0.86125 0.85354 0.82727 0.82028 0.89036 0.92667 0.93317 0.92974 0.90146 0.96058 0.97066 0.97693 0.95818 0.94855 0.90740 0.93542 0.93771 0.90946 0.86262 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 10.42 71.23 0.74 -0.82 16 2 C 0.45 11.43 7.93 71.23 0.56 11.99 16 3 O -0.54 -18.83 16.76 21.94 0.37 -18.46 16 4 O -0.30 -8.37 10.02 4.45 0.04 -8.33 16 5 C 0.06 1.86 5.04 22.51 0.11 1.97 16 6 C -0.12 -3.45 9.99 22.37 0.22 -3.22 16 7 C -0.10 -2.87 9.66 22.25 0.22 -2.65 16 8 C -0.07 -2.44 4.78 -19.85 -0.09 -2.53 16 9 C -0.03 -1.05 2.36 -11.54 -0.03 -1.07 16 10 C -0.10 -3.74 4.80 30.60 0.15 -3.59 16 11 C -0.12 -3.95 5.00 30.60 0.15 -3.80 16 12 C 0.17 6.42 3.39 44.99 0.15 6.57 16 13 N -0.60 -28.33 2.41 -702.77 -1.69 -30.03 16 14 C 0.17 8.22 7.68 127.77 0.98 9.21 16 15 C -0.24 -12.22 6.49 84.03 0.55 -11.67 16 16 H 0.05 2.82 6.80 -2.91 -0.02 2.80 16 17 C -0.02 -1.28 4.70 84.86 0.40 -0.88 16 18 N -0.91 -51.05 11.39 21.65 0.25 -50.80 16 19 Si 0.93 44.49 29.57 68.60 2.03 46.52 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 C -0.10 -3.54 4.96 30.59 0.15 -3.38 16 24 C -0.11 -4.11 4.73 30.59 0.14 -3.97 16 25 C -0.10 -4.24 8.70 22.25 0.19 -4.05 16 26 C -0.14 -5.33 9.77 22.37 0.22 -5.12 16 27 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.16 3.33 7.94 -2.91 -0.02 3.31 16 32 H 0.09 2.51 7.87 -2.39 -0.02 2.49 16 33 H 0.05 2.55 5.11 -2.39 -0.01 2.54 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.78 6.69 -2.39 -0.02 1.77 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.01 0.59 5.91 -2.38 -0.01 0.57 16 39 H 0.00 0.22 7.88 -2.38 -0.02 0.21 16 40 H 0.02 0.99 6.95 -2.39 -0.02 0.97 16 41 H 0.24 13.53 8.31 -92.71 -0.77 12.76 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 1.80 6.80 -2.38 -0.02 1.79 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 3.46 4.81 -2.39 -0.01 3.45 16 46 H 0.12 5.81 7.07 -2.91 -0.02 5.79 16 47 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -66.84 365.26 6.78 -60.06 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.96 Total: 18.07 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.82 Total: -17.03 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.45 Total: -80.83 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.41 Total: -26.79 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.84 6.78 -60.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173789687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.137 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds