Wall clock time and date at job start Tue Mar 31 2020 11:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 119.99589 * 2 1 4 4 N 1.34770 * 120.00355 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63141 * 359.97438 * 4 2 1 6 6 C 1.53195 * 108.77776 * 126.40957 * 5 4 2 7 7 C 1.53046 * 109.30793 * 54.63922 * 6 5 4 8 8 C 1.53031 * 109.53726 * 298.63346 * 7 6 5 9 9 H 1.09000 * 109.50061 * 301.41377 * 8 7 6 10 10 C 1.53000 * 109.49803 * 181.31760 * 8 7 6 11 11 O 1.42900 * 109.47268 * 175.00098 * 10 8 7 12 12 C 1.42906 * 114.00234 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46816 * 329.99895 * 12 11 10 14 14 C 1.50700 * 109.47138 * 89.99756 * 12 11 10 15 15 H 1.08004 * 119.99774 * 240.00185 * 14 12 11 16 16 C 1.37869 * 120.00153 * 60.00290 * 14 12 11 17 17 N 1.31521 * 120.00185 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 120.00187 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46765 * 89.99914 * 18 16 14 20 20 H 1.48502 * 109.47167 * 209.99971 * 18 16 14 21 21 H 1.48500 * 109.46992 * 330.00275 * 18 16 14 22 22 C 1.50698 * 109.47177 * 209.99799 * 12 11 10 23 23 C 1.38230 * 120.00038 * 324.72612 * 22 12 11 24 24 C 1.38235 * 119.99994 * 179.78753 * 23 22 12 25 25 C 1.38236 * 120.00136 * 0.43797 * 24 23 22 26 26 C 1.38242 * 119.99404 * 359.81451 * 25 24 23 27 27 C 1.38224 * 120.00357 * 359.97438 * 26 25 24 28 28 C 1.46927 * 120.63304 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47098 * 240.00173 * 1 2 3 30 30 H 1.08997 * 109.47349 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47078 * 120.00368 * 1 2 3 32 32 H 1.09009 * 109.58590 * 6.62804 * 5 4 2 33 33 H 1.08995 * 109.59117 * 246.20038 * 5 4 2 34 34 H 1.08990 * 109.49959 * 294.69006 * 6 5 4 35 35 H 1.08999 * 109.49609 * 174.58715 * 6 5 4 36 36 H 1.08995 * 109.46071 * 58.65633 * 7 6 5 37 37 H 1.09006 * 109.45640 * 178.61337 * 7 6 5 38 38 H 1.09001 * 109.47267 * 294.99951 * 10 8 7 39 39 H 1.08999 * 109.47124 * 55.00301 * 10 8 7 40 40 H 0.96997 * 119.99922 * 180.02562 * 17 16 14 41 41 H 1.08008 * 120.00135 * 359.97438 * 23 22 12 42 42 H 1.07997 * 120.00157 * 180.27539 * 24 23 22 43 43 H 1.07997 * 120.00789 * 179.83560 * 25 24 23 44 44 H 1.08003 * 119.99553 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.00338 * 180.02562 * 27 26 25 46 46 H 1.08993 * 109.58956 * 113.79989 * 28 4 2 47 47 H 1.08999 * 109.70338 * 353.44355 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4604 -2.4476 0.0017 6 6 1.9684 -3.3003 -1.1652 7 6 3.4899 -3.4351 -1.0687 8 6 4.1336 -2.0502 -1.1664 9 1 3.8495 -1.5826 -2.1091 10 6 5.6559 -2.1890 -1.1028 11 8 6.2599 -0.9107 -1.3105 12 6 7.6883 -0.9293 -1.2709 13 1 8.0229 -1.7224 -0.6022 14 6 8.2260 -1.1801 -2.6562 15 1 8.8412 -2.0469 -2.8479 16 6 7.9327 -0.3031 -3.6787 17 7 7.1839 0.7526 -3.4451 18 14 8.5998 -0.6136 -5.3958 19 1 7.6320 -1.4403 -6.1607 20 1 8.8009 0.6833 -6.0907 21 1 9.8967 -1.3307 -5.3007 22 6 8.1943 0.3982 -0.7683 23 6 7.5274 1.5626 -1.1002 24 6 7.9890 2.7800 -0.6356 25 6 9.1228 2.8338 0.1534 26 6 9.7927 1.6698 0.4809 27 6 9.3286 0.4521 0.0200 28 6 3.6500 -1.1832 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 0.3921 -2.2658 -0.1166 33 1 1.6427 -2.9686 0.9415 34 1 1.7048 -2.8209 -2.1079 35 1 1.5119 -4.2890 -1.1191 36 1 3.7542 -3.8920 -0.1151 37 1 3.8513 -4.0619 -1.8840 38 1 5.9452 -2.5728 -0.1245 39 1 5.9905 -2.8790 -1.8773 40 1 6.9773 1.3694 -4.1647 41 1 6.6438 1.5210 -1.7200 42 1 7.4654 3.6893 -0.8912 43 1 9.4850 3.7851 0.5142 44 1 10.6788 1.7119 1.0970 45 1 9.8518 -0.4573 0.2762 46 1 4.0105 -1.6014 0.9409 47 1 4.0288 -0.1679 -0.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225177777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:14 Heat of formation + Delta-G solvation = -57.616703 kcal Electronic energy + Delta-G solvation = -27439.409990 eV Core-core repulsion = 23779.991822 eV Total energy + Delta-G solvation = -3659.418168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.99893 -38.21843 -37.49868 -36.08762 -33.50423 -32.52117 -31.42449 -30.32572 -29.66674 -29.42651 -26.73313 -25.32230 -24.92065 -22.83348 -21.93055 -21.21653 -20.28372 -19.90544 -18.87553 -16.93633 -16.69654 -15.89091 -15.76030 -15.36541 -15.14497 -14.68113 -14.62741 -14.12050 -14.01651 -13.51385 -13.38366 -13.28431 -13.13992 -12.87286 -12.61368 -12.52062 -12.37060 -12.12497 -12.00008 -11.62923 -11.43953 -11.21625 -11.03143 -10.94937 -10.82193 -10.63176 -10.52505 -10.26371 -10.11052 -9.99044 -9.65664 -9.58001 -9.15099 -8.69024 -8.47512 -8.03990 -7.65527 -7.34796 -5.89130 -4.23672 2.57003 2.72577 2.77911 3.14844 3.26425 3.33926 3.36062 4.36474 4.56042 4.66129 4.84179 4.88140 5.09097 5.13080 5.17381 5.21490 5.27977 5.30900 5.38517 5.56065 5.63818 5.75815 5.81249 5.88815 5.89680 5.98978 6.02907 6.06435 6.09813 6.18300 6.24924 6.45513 6.49013 6.60023 6.64686 6.69869 6.77868 6.92252 7.00438 7.21566 7.39539 7.56273 7.60429 7.69910 7.93968 8.11976 8.15835 8.34375 8.41294 8.60256 9.00734 9.51873 10.94417 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.004478 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.155965 B = 6251.411677 C = 7339.252366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.539 6.539 4 N -0.614 5.614 5 C 0.107 3.893 6 C -0.134 4.134 7 C -0.114 4.114 8 C -0.095 4.095 9 H 0.081 0.919 10 C 0.080 3.920 11 O -0.366 6.366 12 C 0.247 3.753 13 H 0.015 0.985 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.085 3.915 17 N -0.844 5.844 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.041 4.041 23 C -0.041 4.041 24 C -0.154 4.154 25 C -0.146 4.146 26 C -0.151 4.151 27 C -0.131 4.131 28 C 0.121 3.879 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.044 0.956 40 H 0.261 0.739 41 H 0.165 0.835 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 -6.893 6.763 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.415 6.415 4 N -0.348 5.348 5 C -0.016 4.016 6 C -0.172 4.172 7 C -0.152 4.152 8 C -0.114 4.114 9 H 0.099 0.901 10 C 0.002 3.998 11 O -0.285 6.285 12 C 0.191 3.809 13 H 0.033 0.967 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.121 4.121 17 N -0.479 5.479 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.041 4.041 23 C -0.060 4.060 24 C -0.172 4.172 25 C -0.165 4.165 26 C -0.170 4.170 27 C -0.149 4.149 28 C 0.000 4.000 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.182 0.818 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.591 -5.987 6.638 14.637 hybrid contribution 0.760 -0.444 -1.115 1.421 sum -10.831 -6.431 5.523 13.754 Atomic orbital electron populations 1.21931 0.92433 1.05134 1.03673 1.20755 0.90386 0.83339 0.76078 1.90765 1.70609 1.30912 1.49249 1.48220 1.07615 1.05587 1.73400 1.21734 0.96453 0.84544 0.98885 1.21904 0.96738 0.99725 0.98808 1.21514 0.94327 0.97089 1.02223 1.21449 0.95271 0.94990 0.99730 0.90065 1.22032 0.90767 0.89194 0.97818 1.88033 1.21671 1.25863 1.92907 1.18519 0.78723 0.89509 0.94171 0.96694 1.21411 1.33430 1.09823 0.93577 0.92338 1.24972 0.94029 0.94297 0.98764 1.69833 1.35018 1.11868 1.31197 0.86667 0.79369 0.77772 0.84593 1.20568 1.21037 1.19922 1.19997 0.94258 0.96869 0.93012 1.21879 1.01545 0.89953 0.92655 1.21166 0.97583 0.98298 1.00159 1.20809 0.97415 0.96916 1.01337 1.20679 1.00242 0.93049 1.02994 1.20775 0.97605 0.96758 0.99793 1.21666 0.77561 1.03432 0.97385 0.89761 0.89236 0.89644 0.89963 0.91485 0.91392 0.90869 0.91898 0.91411 0.95767 0.93807 0.92797 0.81807 0.88088 0.88370 0.88129 0.87964 0.92198 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.67 36.00 0.31 -1.29 16 2 C 0.51 7.53 7.81 -10.99 -0.09 7.45 16 3 O -0.54 -10.90 16.50 5.55 0.09 -10.81 16 4 N -0.61 -8.36 2.97 -172.74 -0.51 -8.88 16 5 C 0.11 0.98 6.34 -3.71 -0.02 0.96 16 6 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 7 C -0.11 -1.36 5.17 -26.69 -0.14 -1.50 16 8 C -0.10 -1.54 2.58 -90.48 -0.23 -1.77 16 9 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 10 C 0.08 1.54 5.12 37.16 0.19 1.73 16 11 O -0.37 -8.75 8.19 -35.23 -0.29 -9.04 16 12 C 0.25 6.12 2.59 -29.04 -0.08 6.05 16 13 H 0.02 0.36 7.70 -51.93 -0.40 -0.04 16 14 C -0.55 -14.59 8.89 -34.44 -0.31 -14.90 16 15 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 16 C 0.09 2.29 5.24 -17.82 -0.09 2.20 16 17 N -0.84 -23.07 8.50 55.43 0.47 -22.60 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.04 -1.00 4.80 -104.63 -0.50 -1.51 16 23 C -0.04 -1.04 7.46 -39.59 -0.30 -1.33 16 24 C -0.15 -3.44 10.05 -39.58 -0.40 -3.83 16 25 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 26 C -0.15 -3.08 10.05 -39.59 -0.40 -3.48 16 27 C -0.13 -2.92 9.68 -39.59 -0.38 -3.30 16 28 C 0.12 1.98 5.55 -3.68 -0.02 1.96 16 29 H 0.08 0.58 7.94 -51.93 -0.41 0.16 16 30 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 31 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 32 H 0.08 0.55 5.93 -51.92 -0.31 0.24 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.16 4.47 5.50 -52.48 -0.29 4.18 16 42 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 2.16 6.86 -51.93 -0.36 1.81 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -31.57 374.45 -10.25 -41.82 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.62 Total: 5.30 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -3.01 Total: -17.39 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: -0.04 Total: -31.48 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.20 Total: -19.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.57 -10.25 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225177777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.794 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds