Wall clock time and date at job start Tue Mar 31 2020 11:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 119.99589 * 2 1 4 4 N 1.34770 * 120.00355 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63141 * 359.97438 * 4 2 1 6 6 C 1.53195 * 108.77776 * 126.40957 * 5 4 2 7 7 C 1.53046 * 109.30793 * 54.63922 * 6 5 4 8 8 C 1.53031 * 109.53726 * 298.63346 * 7 6 5 9 9 H 1.09000 * 109.50061 * 301.41377 * 8 7 6 10 10 C 1.53000 * 109.49803 * 181.31760 * 8 7 6 11 11 O 1.42900 * 109.47268 * 175.00098 * 10 8 7 12 12 C 1.42906 * 114.00234 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46816 * 329.99895 * 12 11 10 14 14 C 1.50700 * 109.47138 * 89.99756 * 12 11 10 15 15 H 1.08004 * 119.99774 * 240.00185 * 14 12 11 16 16 C 1.37869 * 120.00153 * 60.00290 * 14 12 11 17 17 N 1.31521 * 120.00185 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 120.00187 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46765 * 89.99914 * 18 16 14 20 20 H 1.48502 * 109.47167 * 209.99971 * 18 16 14 21 21 H 1.48500 * 109.46992 * 330.00275 * 18 16 14 22 22 C 1.50698 * 109.47177 * 209.99799 * 12 11 10 23 23 C 1.38230 * 120.00038 * 324.72612 * 22 12 11 24 24 C 1.38235 * 119.99994 * 179.78753 * 23 22 12 25 25 C 1.38236 * 120.00136 * 0.43797 * 24 23 22 26 26 C 1.38242 * 119.99404 * 359.81451 * 25 24 23 27 27 C 1.38224 * 120.00357 * 359.97438 * 26 25 24 28 28 C 1.46927 * 120.63304 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47098 * 240.00173 * 1 2 3 30 30 H 1.08997 * 109.47349 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47078 * 120.00368 * 1 2 3 32 32 H 1.09009 * 109.58590 * 6.62804 * 5 4 2 33 33 H 1.08995 * 109.59117 * 246.20038 * 5 4 2 34 34 H 1.08990 * 109.49959 * 294.69006 * 6 5 4 35 35 H 1.08999 * 109.49609 * 174.58715 * 6 5 4 36 36 H 1.08995 * 109.46071 * 58.65633 * 7 6 5 37 37 H 1.09006 * 109.45640 * 178.61337 * 7 6 5 38 38 H 1.09001 * 109.47267 * 294.99951 * 10 8 7 39 39 H 1.08999 * 109.47124 * 55.00301 * 10 8 7 40 40 H 0.96997 * 119.99922 * 180.02562 * 17 16 14 41 41 H 1.08008 * 120.00135 * 359.97438 * 23 22 12 42 42 H 1.07997 * 120.00157 * 180.27539 * 24 23 22 43 43 H 1.07997 * 120.00789 * 179.83560 * 25 24 23 44 44 H 1.08003 * 119.99553 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.00338 * 180.02562 * 27 26 25 46 46 H 1.08993 * 109.58956 * 113.79989 * 28 4 2 47 47 H 1.08999 * 109.70338 * 353.44355 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4604 -2.4476 0.0017 6 6 1.9684 -3.3003 -1.1652 7 6 3.4899 -3.4351 -1.0687 8 6 4.1336 -2.0502 -1.1664 9 1 3.8495 -1.5826 -2.1091 10 6 5.6559 -2.1890 -1.1028 11 8 6.2599 -0.9107 -1.3105 12 6 7.6883 -0.9293 -1.2709 13 1 8.0229 -1.7224 -0.6022 14 6 8.2260 -1.1801 -2.6562 15 1 8.8412 -2.0469 -2.8479 16 6 7.9327 -0.3031 -3.6787 17 7 7.1839 0.7526 -3.4451 18 14 8.5998 -0.6136 -5.3958 19 1 7.6320 -1.4403 -6.1607 20 1 8.8009 0.6833 -6.0907 21 1 9.8967 -1.3307 -5.3007 22 6 8.1943 0.3982 -0.7683 23 6 7.5274 1.5626 -1.1002 24 6 7.9890 2.7800 -0.6356 25 6 9.1228 2.8338 0.1534 26 6 9.7927 1.6698 0.4809 27 6 9.3286 0.4521 0.0200 28 6 3.6500 -1.1832 0.0011 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 0.3921 -2.2658 -0.1166 33 1 1.6427 -2.9686 0.9415 34 1 1.7048 -2.8209 -2.1079 35 1 1.5119 -4.2890 -1.1191 36 1 3.7542 -3.8920 -0.1151 37 1 3.8513 -4.0619 -1.8840 38 1 5.9452 -2.5728 -0.1245 39 1 5.9905 -2.8790 -1.8773 40 1 6.9773 1.3694 -4.1647 41 1 6.6438 1.5210 -1.7200 42 1 7.4654 3.6893 -0.8912 43 1 9.4850 3.7851 0.5142 44 1 10.6788 1.7119 1.0970 45 1 9.8518 -0.4573 0.2762 46 1 4.0105 -1.6014 0.9409 47 1 4.0288 -0.1679 -0.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225177777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:13 Heat of formation + Delta-G solvation = -75.509014 kcal Electronic energy + Delta-G solvation = -27440.185859 eV Core-core repulsion = 23779.991822 eV Total energy + Delta-G solvation = -3660.194037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14989 -39.96884 -38.84659 -37.68834 -35.07123 -34.11320 -32.63110 -31.96301 -31.28508 -30.56156 -28.63865 -26.63940 -26.06163 -24.67568 -23.19556 -22.79499 -21.92007 -21.35080 -19.94278 -18.65908 -18.04637 -17.46734 -17.17340 -16.89754 -16.52814 -16.43052 -15.92843 -15.74946 -15.24503 -15.00892 -14.87602 -14.82380 -14.18909 -14.12064 -14.00970 -13.88918 -13.70987 -13.48111 -13.26295 -13.08729 -12.99645 -12.84955 -12.72574 -12.48163 -12.24749 -11.96344 -11.90750 -11.81423 -11.55035 -11.46821 -11.41161 -11.03262 -10.79629 -10.70260 -9.87337 -9.61599 -9.42592 -9.16920 -7.89810 -6.33705 0.80629 0.98681 1.36260 1.37781 1.46533 1.65113 2.09918 2.38124 3.05214 3.30553 3.40355 3.69254 3.87423 3.92142 4.08800 4.11904 4.29946 4.31603 4.35229 4.42926 4.49905 4.55666 4.57948 4.62994 4.64500 4.69101 4.78176 4.83212 4.86729 4.91378 4.94812 5.03203 5.13060 5.16977 5.18777 5.21287 5.34289 5.46080 5.47069 5.57364 5.61321 5.67853 5.86529 6.05060 6.16310 6.35510 6.50536 6.52395 6.64748 7.12935 7.22358 7.46126 8.89076 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.004478 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.155965 B = 6251.411677 C = 7339.252366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.491 3.509 3 O -0.610 6.610 4 N -0.613 5.613 5 C 0.101 3.899 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.084 4.084 9 H 0.043 0.957 10 C 0.074 3.926 11 O -0.389 6.389 12 C 0.245 3.755 13 H 0.017 0.983 14 C -0.565 4.565 15 H 0.053 0.947 16 C 0.042 3.958 17 N -0.862 5.862 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.269 1.269 22 C -0.067 4.067 23 C -0.066 4.066 24 C -0.166 4.166 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.142 4.142 28 C 0.129 3.871 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.256 0.744 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.118 0.882 46 H 0.072 0.928 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -8.482 8.024 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.282 3.718 3 O -0.492 6.492 4 N -0.345 5.345 5 C -0.020 4.020 6 C -0.166 4.166 7 C -0.146 4.146 8 C -0.103 4.103 9 H 0.062 0.938 10 C -0.004 4.004 11 O -0.309 6.309 12 C 0.188 3.812 13 H 0.035 0.965 14 C -0.602 4.602 15 H 0.071 0.929 16 C -0.161 4.161 17 N -0.497 5.497 18 Si 0.770 3.230 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.068 4.068 23 C -0.085 4.085 24 C -0.184 4.184 25 C -0.159 4.159 26 C -0.162 4.162 27 C -0.160 4.160 28 C 0.005 3.995 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.136 0.864 46 H 0.090 0.910 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.494 -7.634 7.905 16.639 hybrid contribution 1.045 0.032 -1.432 1.773 sum -11.448 -7.601 6.473 15.190 Atomic orbital electron populations 1.21942 0.87332 1.05986 1.06554 1.21938 0.92821 0.82497 0.74534 1.90734 1.72425 1.33485 1.52567 1.48387 1.06384 1.07450 1.72304 1.22162 0.97901 0.82143 0.99829 1.21920 0.94533 1.01791 0.98397 1.21521 0.96174 0.93637 1.03291 1.21348 0.93442 0.97799 0.97750 0.93799 1.22284 0.92601 0.87347 0.98144 1.88016 1.21354 1.28366 1.93119 1.18500 0.79146 0.90050 0.93454 0.96467 1.21647 1.33722 1.09791 0.94997 0.92872 1.25637 0.94416 0.94214 1.01877 1.70088 1.35730 1.12317 1.31543 0.85787 0.78923 0.77488 0.80753 1.20100 1.21094 1.19394 1.20146 0.95571 0.96511 0.94559 1.21625 1.01298 0.91598 0.93967 1.21374 0.98727 0.97696 1.00605 1.21222 0.96032 0.98850 0.99757 1.21144 1.00950 0.91975 1.02086 1.21063 0.96896 0.98601 0.99457 1.21302 0.80094 1.00215 0.97857 0.86178 0.89644 0.86941 0.86292 0.89238 0.92605 0.86943 0.90025 0.91322 0.94087 0.94925 0.93385 0.85189 0.86933 0.84459 0.84013 0.86358 0.90975 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.67 71.23 0.62 -1.96 16 2 C 0.49 14.85 7.81 87.66 0.68 15.53 16 3 O -0.61 -26.66 16.50 -3.05 -0.05 -26.71 16 4 N -0.61 -16.53 2.97 -818.83 -2.43 -18.96 16 5 C 0.10 1.49 6.34 86.36 0.55 2.04 16 6 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 7 C -0.11 -2.45 5.17 30.62 0.16 -2.29 16 8 C -0.08 -2.86 2.58 -10.70 -0.03 -2.89 16 9 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 10 C 0.07 3.01 5.12 71.98 0.37 3.38 16 11 O -0.39 -20.07 8.19 -148.98 -1.22 -21.29 16 12 C 0.24 12.79 2.59 29.10 0.08 12.87 16 13 H 0.02 0.86 7.70 -2.39 -0.02 0.84 16 14 C -0.56 -31.48 8.89 25.60 0.23 -31.25 16 15 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 16 C 0.04 2.36 5.24 84.65 0.44 2.81 16 17 N -0.86 -49.85 8.50 21.45 0.18 -49.67 16 18 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 C -0.07 -3.45 4.80 -19.87 -0.10 -3.55 16 23 C -0.07 -3.47 7.46 22.27 0.17 -3.30 16 24 C -0.17 -7.54 10.05 22.27 0.22 -7.31 16 25 C -0.14 -5.48 10.05 22.27 0.22 -5.26 16 26 C -0.14 -5.52 10.05 22.27 0.22 -5.30 16 27 C -0.14 -6.28 9.68 22.27 0.22 -6.07 16 28 C 0.13 4.46 5.55 86.38 0.48 4.94 16 29 H 0.12 1.11 7.94 -2.38 -0.02 1.09 16 30 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 31 H 0.11 1.24 7.69 -2.39 -0.02 1.23 16 32 H 0.12 0.96 5.93 -2.38 -0.01 0.94 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.13 7.73 5.50 -2.91 -0.02 7.71 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 43 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 44 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 2.25 6.86 -2.39 -0.02 2.23 16 Total: -1.00 -77.10 374.45 4.16 -72.93 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.94 Total: 26.84 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 4.72 Total: -29.45 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -2.25 Total: -68.63 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.27 Total: -48.00 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.10 4.16 -72.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225177777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.575 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds