Wall clock time and date at job start Tue Mar 31 2020 13:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99795 * 2 1 4 4 O 1.20824 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99829 * 179.97438 * 3 2 1 6 6 H 1.09000 * 108.82910 * 61.49108 * 5 3 2 7 7 C 1.54171 * 108.85805 * 303.08345 * 5 3 2 8 8 C 1.53863 * 112.00780 * 197.64818 * 7 5 3 9 9 C 1.50822 * 111.59403 * 319.11756 * 8 7 5 10 10 N 1.47622 * 108.08914 * 95.00304 * 9 8 7 11 11 C 1.46904 * 111.00424 * 150.32261 * 10 9 8 12 12 C 1.50696 * 109.46975 * 64.26166 * 11 10 9 13 13 C 1.37639 * 120.12556 * 266.52161 * 12 11 10 14 14 C 1.38619 * 120.24304 * 180.02562 * 13 12 11 15 15 C 1.38651 * 120.50207 * 359.97438 * 14 13 12 16 16 C 1.37586 * 120.25280 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12655 * 86.25055 * 12 11 10 18 18 C 1.41391 * 120.24473 * 359.97438 * 17 12 11 19 19 H 1.07998 * 120.00202 * 33.29778 * 18 17 12 20 20 C 1.39945 * 120.00275 * 213.29857 * 18 17 12 21 21 N 1.30831 * 119.99737 * 358.52056 * 20 18 17 22 22 Si 1.86798 * 120.00358 * 178.51328 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00364 * 22 20 18 24 24 H 1.48504 * 109.47005 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47022 * 300.00275 * 22 20 18 26 26 C 1.39785 * 114.76121 * 277.17387 * 10 9 8 27 27 C 1.50751 * 108.85754 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47381 * 300.00249 * 1 2 3 30 30 H 1.09002 * 109.46973 * 60.00466 * 1 2 3 31 31 H 1.08998 * 108.98310 * 318.32194 * 7 5 3 32 32 H 1.09004 * 108.97895 * 77.11794 * 7 5 3 33 33 H 1.08997 * 109.13007 * 198.53058 * 8 7 5 34 34 H 1.08994 * 109.00188 * 79.61338 * 8 7 5 35 35 H 1.08998 * 109.74735 * 335.33653 * 9 8 7 36 36 H 1.09006 * 109.74224 * 214.66529 * 9 8 7 37 37 H 1.08996 * 109.47540 * 184.26485 * 11 10 9 38 38 H 1.09007 * 109.46658 * 304.26486 * 11 10 9 39 39 H 1.07991 * 119.88036 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.74673 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.87480 * 179.97438 * 15 14 13 42 42 H 1.08003 * 120.13211 * 179.97438 * 16 15 14 43 43 H 0.96991 * 120.00125 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.01978 * 182.86589 * 26 10 9 45 45 H 1.08996 * 109.01748 * 301.76423 * 26 10 9 46 46 H 1.09005 * 109.54638 * 93.96155 * 27 5 3 47 47 H 1.09007 * 109.61785 * 333.73599 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9437 0.8014 -0.9057 7 6 4.1051 0.5059 1.2234 8 6 5.5598 0.8870 1.5490 9 6 6.3890 1.0319 0.2975 10 7 6.3993 2.4582 -0.0830 11 6 7.6444 2.8084 -0.7795 12 6 7.7226 2.0511 -2.0800 13 6 8.3816 0.8442 -2.1380 14 6 8.4554 0.1457 -3.3331 15 6 7.8674 0.6526 -4.4819 16 6 7.2035 1.8572 -4.4472 17 6 7.1172 2.5724 -3.2382 18 6 6.4322 3.8083 -3.1890 19 1 6.7743 4.5894 -2.5264 20 6 5.3107 4.0195 -3.9991 21 7 4.9134 3.0840 -4.8229 22 14 4.3810 5.6368 -3.9040 23 1 5.2936 6.7539 -4.2567 24 1 3.2410 5.6091 -4.8554 25 1 3.8687 5.8329 -2.5240 26 6 5.2827 2.8778 -0.8118 27 6 3.9782 2.7250 -0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.4783 0.7289 2.0868 32 1 4.0582 -0.5636 1.0184 33 1 5.9990 0.1139 2.1793 34 1 5.5661 1.8325 2.0912 35 1 5.9504 0.4396 -0.5055 36 1 7.4076 0.6946 0.4897 37 1 7.6590 3.8795 -0.9812 38 1 8.4972 2.5449 -0.1537 39 1 8.8428 0.4398 -1.2492 40 1 8.9749 -0.8004 -3.3696 41 1 7.9315 0.1001 -5.4077 42 1 6.7466 2.2504 -5.3434 43 1 4.1360 3.2301 -5.3841 44 1 5.4102 3.9251 -1.0855 45 1 5.2063 2.2802 -1.7201 46 1 4.1456 3.0571 1.0244 47 1 3.1926 3.3284 -0.4553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235529281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:16 Heat of formation + Delta-G solvation = -65.966552 kcal Electronic energy + Delta-G solvation = -28375.504243 eV Core-core repulsion = 24715.723998 eV Total energy + Delta-G solvation = -3659.780244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.61616 -39.16127 -37.29151 -36.33622 -34.29404 -33.68774 -31.72346 -30.29397 -29.47809 -28.11022 -26.66013 -25.41637 -24.93797 -23.64318 -21.57663 -20.88189 -20.53110 -19.21030 -19.10496 -17.38523 -17.09546 -16.69525 -16.29259 -15.55826 -15.09078 -14.70050 -14.62130 -14.33603 -14.14456 -13.68185 -13.47843 -13.24696 -13.02109 -12.90501 -12.59415 -12.22775 -12.05382 -11.74345 -11.58811 -11.47458 -11.32309 -11.14610 -10.99486 -10.76380 -10.73409 -10.65031 -10.48803 -10.37529 -10.30511 -10.24059 -10.02329 -9.82448 -9.60472 -9.49823 -9.10014 -7.51481 -7.28529 -7.23276 -6.64550 -4.39516 2.36685 2.77198 2.84684 2.94341 3.09382 3.11020 3.22930 3.95838 4.64374 4.73477 4.77509 4.97036 5.07193 5.11285 5.15174 5.35578 5.48323 5.54270 5.58653 5.64486 5.83977 5.90823 5.95108 6.06415 6.15882 6.19188 6.26279 6.31421 6.38678 6.40841 6.44046 6.45511 6.48394 6.67691 6.73547 6.75875 6.94750 7.12032 7.17891 7.22975 7.37422 7.61215 7.80531 7.88936 7.96685 8.02371 8.05411 8.21675 8.31224 8.61655 8.89800 8.94478 10.25978 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.006012 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.366528 B = 4655.907626 C = 5857.573243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.076 4.076 6 H 0.108 0.892 7 C -0.102 4.102 8 C -0.114 4.114 9 C 0.065 3.935 10 N -0.544 5.544 11 C 0.123 3.877 12 C -0.223 4.223 13 C -0.089 4.089 14 C -0.233 4.233 15 C -0.113 4.113 16 C -0.152 4.152 17 C 0.118 3.882 18 C -0.457 4.457 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.809 5.809 22 Si 0.898 3.102 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.260 1.260 26 C 0.077 3.923 27 C -0.116 4.116 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.277 0.723 44 H 0.085 0.915 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -4.563 8.981 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.396 6.396 5 C -0.095 4.095 6 H 0.125 0.875 7 C -0.139 4.139 8 C -0.152 4.152 9 C -0.063 4.063 10 N -0.266 5.266 11 C -0.003 4.003 12 C -0.226 4.226 13 C -0.108 4.108 14 C -0.252 4.252 15 C -0.132 4.132 16 C -0.172 4.172 17 C 0.115 3.885 18 C -0.488 4.488 19 H 0.095 0.905 20 C -0.139 4.139 21 N -0.436 5.436 22 Si 0.723 3.277 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.185 1.185 26 C -0.053 4.053 27 C -0.154 4.154 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.144 0.856 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.368 -4.049 9.230 10.985 hybrid contribution -0.895 0.086 -0.973 1.325 sum -5.263 -3.963 8.257 10.563 Atomic orbital electron populations 1.23216 0.77096 1.03332 1.02353 1.86544 1.22900 1.33950 1.84239 1.24220 0.92623 0.80978 0.71441 1.90624 1.67140 1.36359 1.45441 1.21158 0.85607 1.00398 1.02342 0.87463 1.21842 0.97075 0.99465 0.95548 1.21432 0.93303 1.01965 0.98454 1.21692 0.99232 0.89354 0.96008 1.59453 1.03262 1.16914 1.47002 1.20735 0.89980 0.99303 0.90283 1.20451 1.08969 0.97382 0.95785 1.20393 0.99371 0.95197 0.95854 1.20421 1.09446 1.01020 0.94323 1.20758 0.99166 0.96920 0.96315 1.21594 1.00918 0.95582 0.99076 1.17461 0.88829 0.92590 0.89587 1.19400 1.09702 0.99472 1.20238 0.90505 1.25752 0.97498 0.97265 0.93400 1.69736 1.22589 1.32617 1.18628 0.86501 0.79277 0.82387 0.79546 1.19052 1.20497 1.18473 1.21175 0.87507 1.02540 0.94038 1.21669 0.99078 0.92277 1.02353 0.88373 0.92171 0.92035 0.92312 0.91342 0.92072 0.90599 0.93962 0.91541 0.90820 0.92640 0.89681 0.89793 0.89692 0.85649 0.91153 0.89663 0.93122 0.90955 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.21 10.42 -39.26 -0.41 -5.62 16 3 C 0.46 7.65 7.14 36.00 0.26 7.91 16 4 O -0.51 -9.55 15.00 -18.75 -0.28 -9.83 16 5 C -0.08 -1.22 2.12 -92.29 -0.20 -1.41 16 6 H 0.11 1.89 6.57 -51.93 -0.34 1.55 16 7 C -0.10 -1.34 5.16 -25.67 -0.13 -1.47 16 8 C -0.11 -1.50 5.41 -27.37 -0.15 -1.65 16 9 C 0.06 1.03 4.17 -4.52 -0.02 1.01 16 10 N -0.54 -9.66 4.12 -241.47 -0.99 -10.65 16 11 C 0.12 2.34 5.15 -4.98 -0.03 2.32 16 12 C -0.22 -4.85 4.39 -103.91 -0.46 -5.31 16 13 C -0.09 -1.87 8.86 -39.66 -0.35 -2.22 16 14 C -0.23 -5.02 10.05 -39.29 -0.39 -5.42 16 15 C -0.11 -2.59 10.02 -39.67 -0.40 -2.98 16 16 C -0.15 -3.80 8.66 -38.87 -0.34 -4.13 16 17 C 0.12 2.87 4.64 -106.82 -0.50 2.37 16 18 C -0.46 -10.99 5.13 -37.74 -0.19 -11.18 16 19 H 0.08 1.80 6.08 -52.49 -0.32 1.48 16 20 C 0.08 1.82 5.40 -17.34 -0.09 1.73 16 21 N -0.81 -20.17 10.62 55.55 0.59 -19.58 16 22 Si 0.90 18.65 29.56 -169.99 -5.02 13.63 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 26 C 0.08 1.49 3.41 -6.76 -0.02 1.46 16 27 C -0.12 -2.02 4.93 -27.13 -0.13 -2.15 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.04 7.27 -51.93 -0.38 0.66 16 35 H 0.04 0.76 6.66 -51.93 -0.35 0.41 16 36 H 0.07 1.02 7.10 -51.93 -0.37 0.66 16 37 H 0.07 1.45 6.32 -51.93 -0.33 1.12 16 38 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 39 H 0.09 1.58 7.62 -52.49 -0.40 1.18 16 40 H 0.08 1.63 8.06 -52.48 -0.42 1.20 16 41 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.13 3.29 6.15 -52.48 -0.32 2.97 16 43 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 44 H 0.09 1.79 6.12 -51.93 -0.32 1.47 16 45 H 0.05 1.16 5.43 -51.93 -0.28 0.88 16 46 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 47 H 0.08 1.54 6.70 -51.92 -0.35 1.19 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -26.46 356.35 -9.86 -36.32 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.04 Total: 10.04 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.07 Total: -19.68 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: -0.40 Total: -30.23 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.69 Total: -15.45 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.46 -9.86 -36.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.644 kcal (2) G-P(sol) polarization free energy of solvation -26.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds