Wall clock time and date at job start Tue Mar 31 2020 13:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99795 * 2 1 4 4 O 1.20824 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99829 * 179.97438 * 3 2 1 6 6 H 1.09000 * 108.82910 * 61.49108 * 5 3 2 7 7 C 1.54171 * 108.85805 * 303.08345 * 5 3 2 8 8 C 1.53863 * 112.00780 * 197.64818 * 7 5 3 9 9 C 1.50822 * 111.59403 * 319.11756 * 8 7 5 10 10 N 1.47622 * 108.08914 * 95.00304 * 9 8 7 11 11 C 1.46904 * 111.00424 * 150.32261 * 10 9 8 12 12 C 1.50696 * 109.46975 * 64.26166 * 11 10 9 13 13 C 1.37639 * 120.12556 * 266.52161 * 12 11 10 14 14 C 1.38619 * 120.24304 * 180.02562 * 13 12 11 15 15 C 1.38651 * 120.50207 * 359.97438 * 14 13 12 16 16 C 1.37586 * 120.25280 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12655 * 86.25055 * 12 11 10 18 18 C 1.41391 * 120.24473 * 359.97438 * 17 12 11 19 19 H 1.07998 * 120.00202 * 33.29778 * 18 17 12 20 20 C 1.39945 * 120.00275 * 213.29857 * 18 17 12 21 21 N 1.30831 * 119.99737 * 358.52056 * 20 18 17 22 22 Si 1.86798 * 120.00358 * 178.51328 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00364 * 22 20 18 24 24 H 1.48504 * 109.47005 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47022 * 300.00275 * 22 20 18 26 26 C 1.39785 * 114.76121 * 277.17387 * 10 9 8 27 27 C 1.50751 * 108.85754 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47381 * 300.00249 * 1 2 3 30 30 H 1.09002 * 109.46973 * 60.00466 * 1 2 3 31 31 H 1.08998 * 108.98310 * 318.32194 * 7 5 3 32 32 H 1.09004 * 108.97895 * 77.11794 * 7 5 3 33 33 H 1.08997 * 109.13007 * 198.53058 * 8 7 5 34 34 H 1.08994 * 109.00188 * 79.61338 * 8 7 5 35 35 H 1.08998 * 109.74735 * 335.33653 * 9 8 7 36 36 H 1.09006 * 109.74224 * 214.66529 * 9 8 7 37 37 H 1.08996 * 109.47540 * 184.26485 * 11 10 9 38 38 H 1.09007 * 109.46658 * 304.26486 * 11 10 9 39 39 H 1.07991 * 119.88036 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.74673 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.87480 * 179.97438 * 15 14 13 42 42 H 1.08003 * 120.13211 * 179.97438 * 16 15 14 43 43 H 0.96991 * 120.00125 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.01978 * 182.86589 * 26 10 9 45 45 H 1.08996 * 109.01748 * 301.76423 * 26 10 9 46 46 H 1.09005 * 109.54638 * 93.96155 * 27 5 3 47 47 H 1.09007 * 109.61785 * 333.73599 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9437 0.8014 -0.9057 7 6 4.1051 0.5059 1.2234 8 6 5.5598 0.8870 1.5490 9 6 6.3890 1.0319 0.2975 10 7 6.3993 2.4582 -0.0830 11 6 7.6444 2.8084 -0.7795 12 6 7.7226 2.0511 -2.0800 13 6 8.3816 0.8442 -2.1380 14 6 8.4554 0.1457 -3.3331 15 6 7.8674 0.6526 -4.4819 16 6 7.2035 1.8572 -4.4472 17 6 7.1172 2.5724 -3.2382 18 6 6.4322 3.8083 -3.1890 19 1 6.7743 4.5894 -2.5264 20 6 5.3107 4.0195 -3.9991 21 7 4.9134 3.0840 -4.8229 22 14 4.3810 5.6368 -3.9040 23 1 5.2936 6.7539 -4.2567 24 1 3.2410 5.6091 -4.8554 25 1 3.8687 5.8329 -2.5240 26 6 5.2827 2.8778 -0.8118 27 6 3.9782 2.7250 -0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.4783 0.7289 2.0868 32 1 4.0582 -0.5636 1.0184 33 1 5.9990 0.1139 2.1793 34 1 5.5661 1.8325 2.0912 35 1 5.9504 0.4396 -0.5055 36 1 7.4076 0.6946 0.4897 37 1 7.6590 3.8795 -0.9812 38 1 8.4972 2.5449 -0.1537 39 1 8.8428 0.4398 -1.2492 40 1 8.9749 -0.8004 -3.3696 41 1 7.9315 0.1001 -5.4077 42 1 6.7466 2.2504 -5.3434 43 1 4.1360 3.2301 -5.3841 44 1 5.4102 3.9251 -1.0855 45 1 5.2063 2.2802 -1.7201 46 1 4.1456 3.0571 1.0244 47 1 3.1926 3.3284 -0.4553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235529281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:15 Heat of formation + Delta-G solvation = -78.510924 kcal Electronic energy + Delta-G solvation = -28376.048208 eV Core-core repulsion = 24715.723998 eV Total energy + Delta-G solvation = -3660.324209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90460 -40.65264 -38.84745 -37.61288 -35.68904 -35.49072 -33.04115 -31.93941 -31.24550 -29.29577 -28.02871 -27.02075 -26.31281 -25.13983 -22.95462 -22.55460 -22.05485 -20.80360 -20.34948 -18.94685 -18.60742 -17.94101 -17.51046 -17.30473 -16.49316 -16.27805 -16.07908 -15.75978 -15.50001 -15.19976 -15.10593 -14.58223 -14.38872 -14.19523 -14.10071 -13.70888 -13.35034 -13.18330 -13.04534 -12.96320 -12.84565 -12.76968 -12.56700 -12.43825 -12.18008 -12.01173 -11.86878 -11.78690 -11.68257 -11.63171 -11.39331 -11.23931 -11.22943 -11.14901 -10.89082 -9.23303 -9.08291 -8.83276 -8.46486 -6.26049 1.00869 1.07122 1.16564 1.35607 1.42033 1.51228 1.70627 2.20458 2.86114 3.29909 3.55612 3.74355 3.82337 3.88508 4.19851 4.22489 4.26783 4.27502 4.34105 4.44962 4.48311 4.56875 4.63217 4.65737 4.71491 4.75930 4.85887 4.93454 4.95299 5.02748 5.05281 5.09701 5.18946 5.24475 5.29947 5.34324 5.41267 5.42381 5.56970 5.58393 5.59788 5.83054 6.06445 6.20123 6.24381 6.44205 6.48203 6.64178 6.73682 6.79993 7.05509 7.13440 8.44987 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.006012 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.366528 B = 4655.907626 C = 5857.573243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.537 6.537 5 C -0.074 4.074 6 H 0.086 0.914 7 C -0.095 4.095 8 C -0.106 4.106 9 C 0.065 3.935 10 N -0.535 5.535 11 C 0.125 3.875 12 C -0.219 4.219 13 C -0.090 4.090 14 C -0.231 4.231 15 C -0.124 4.124 16 C -0.183 4.183 17 C 0.092 3.908 18 C -0.466 4.466 19 H 0.075 0.925 20 C 0.043 3.957 21 N -0.840 5.840 22 Si 0.948 3.052 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.260 1.260 26 C 0.095 3.905 27 C -0.106 4.106 28 H 0.135 0.865 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.019 0.981 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.277 0.723 44 H 0.063 0.937 45 H 0.010 0.990 46 H 0.087 0.913 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 -6.038 11.735 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.427 6.427 5 C -0.093 4.093 6 H 0.104 0.896 7 C -0.133 4.133 8 C -0.144 4.144 9 C -0.062 4.062 10 N -0.257 5.257 11 C -0.002 4.002 12 C -0.222 4.222 13 C -0.109 4.109 14 C -0.251 4.251 15 C -0.142 4.142 16 C -0.203 4.203 17 C 0.090 3.910 18 C -0.497 4.497 19 H 0.093 0.907 20 C -0.170 4.170 21 N -0.469 5.469 22 Si 0.771 3.229 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.184 1.184 26 C -0.035 4.035 27 C -0.144 4.144 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.028 0.972 46 H 0.106 0.894 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.867 -5.545 11.991 13.765 hybrid contribution -1.013 0.418 -1.824 2.128 sum -4.880 -5.127 10.167 12.388 Atomic orbital electron populations 1.23569 0.74978 1.05807 1.02371 1.86521 1.24956 1.32600 1.83610 1.24238 0.92752 0.81168 0.70757 1.90612 1.67760 1.37372 1.46953 1.21075 0.85756 0.99389 1.03057 0.89609 1.21853 0.97320 0.99655 0.94431 1.21388 0.92713 1.03140 0.97174 1.21799 1.00538 0.87338 0.96528 1.59520 1.02086 1.18495 1.45582 1.20773 0.91474 0.98342 0.89580 1.20780 1.07475 0.97843 0.96067 1.20750 0.98648 0.94584 0.96912 1.20793 1.08486 1.01911 0.93861 1.20980 0.99012 0.96412 0.97808 1.21542 1.02767 0.97187 0.98799 1.17748 0.89756 0.93109 0.90437 1.19470 1.10057 0.99698 1.20487 0.90680 1.26334 0.98060 0.99513 0.93047 1.69838 1.23170 1.34118 1.19760 0.85735 0.78284 0.79597 0.79289 1.18246 1.20505 1.18442 1.20829 0.89172 1.00440 0.93049 1.21504 0.97188 0.93349 1.02390 0.84692 0.91466 0.92791 0.90736 0.90026 0.88896 0.90576 0.96251 0.90130 0.92090 0.89943 0.86355 0.86959 0.88332 0.88077 0.91286 0.91884 0.97182 0.89410 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.97 10.42 -51.42 -0.54 -10.50 16 3 C 0.47 15.18 7.14 71.24 0.51 15.69 16 4 O -0.54 -20.26 15.00 21.97 0.33 -19.93 16 5 C -0.07 -2.32 2.12 -11.87 -0.03 -2.34 16 6 H 0.09 3.10 6.57 -2.39 -0.02 3.08 16 7 C -0.10 -2.25 5.16 31.28 0.16 -2.09 16 8 C -0.11 -2.42 5.41 30.18 0.16 -2.26 16 9 C 0.06 1.91 4.17 85.46 0.36 2.26 16 10 N -0.53 -18.38 4.12 -917.89 -3.78 -22.16 16 11 C 0.12 4.60 5.15 85.56 0.44 5.04 16 12 C -0.22 -9.42 4.39 -19.41 -0.09 -9.50 16 13 C -0.09 -3.58 8.86 22.22 0.20 -3.38 16 14 C -0.23 -9.56 10.05 22.46 0.23 -9.33 16 15 C -0.12 -5.69 10.02 22.21 0.22 -5.47 16 16 C -0.18 -9.50 8.66 22.73 0.20 -9.31 16 17 C 0.09 4.61 4.64 -21.29 -0.10 4.51 16 18 C -0.47 -23.37 5.13 23.46 0.12 -23.25 16 19 H 0.08 3.67 6.08 -2.91 -0.02 3.65 16 20 C 0.04 2.13 5.40 85.26 0.46 2.59 16 21 N -0.84 -44.36 10.62 21.83 0.23 -44.13 16 22 Si 0.95 39.73 29.56 68.60 2.03 41.76 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 C 0.09 3.76 3.41 88.06 0.30 4.06 16 27 C -0.11 -3.73 4.93 30.34 0.15 -3.58 16 28 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.07 1.57 7.98 -2.39 -0.02 1.55 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.79 7.27 -2.39 -0.02 1.77 16 35 H 0.02 0.67 6.66 -2.39 -0.02 0.65 16 36 H 0.08 2.15 7.10 -2.38 -0.02 2.14 16 37 H 0.06 2.40 6.32 -2.39 -0.02 2.38 16 38 H 0.08 2.60 7.88 -2.38 -0.02 2.58 16 39 H 0.12 3.90 7.62 -2.92 -0.02 3.87 16 40 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.10 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.10 5.66 6.15 -2.91 -0.02 5.64 16 43 H 0.28 13.81 8.30 -92.72 -0.77 13.04 16 44 H 0.06 2.74 6.12 -2.39 -0.01 2.73 16 45 H 0.01 0.49 5.43 -2.39 -0.01 0.47 16 46 H 0.09 2.77 7.11 -2.38 -0.02 2.76 16 47 H 0.06 2.30 6.70 -2.38 -0.02 2.29 16 Total: -1.00 -59.94 356.35 3.73 -56.20 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.97 Total: 33.39 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 4.49 Total: -34.63 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -3.55 Total: -66.28 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.21 Total: -30.44 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -59.94 3.73 -56.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.308 kcal (2) G-P(sol) polarization free energy of solvation -59.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds