Wall clock time and date at job start Tue Mar 31 2020 13:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99556 * 2 1 4 4 O 1.20827 * 119.99531 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00082 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.47257 * 180.02562 * 5 3 2 7 7 C 1.38264 * 119.99302 * 269.97382 * 6 5 3 8 8 C 1.38216 * 119.99668 * 179.97438 * 7 6 5 9 9 C 1.38260 * 120.00016 * 359.85590 * 8 7 6 10 10 C 1.38215 * 119.99868 * 0.40136 * 9 8 7 11 11 C 1.50701 * 120.00313 * 179.80936 * 10 9 8 12 12 N 1.46896 * 109.47043 * 269.72764 * 11 10 9 13 13 C 1.46850 * 111.00472 * 66.04154 * 12 11 10 14 14 C 1.53036 * 109.52384 * 185.84130 * 13 12 11 15 15 C 1.53114 * 109.27799 * 300.81924 * 14 13 12 16 16 C 1.53120 * 109.16161 * 57.65854 * 15 14 13 17 17 H 1.08998 * 109.50493 * 62.28140 * 16 15 14 18 18 C 1.50699 * 109.50204 * 182.40736 * 16 15 14 19 19 H 1.08000 * 120.00193 * 120.00336 * 18 16 15 20 20 C 1.37879 * 119.99808 * 299.99151 * 18 16 15 21 21 N 1.31509 * 119.99991 * 180.02562 * 20 18 16 22 22 Si 1.86806 * 119.99955 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.46974 * 89.99636 * 22 20 18 24 24 H 1.48498 * 109.46881 * 209.99563 * 22 20 18 25 25 H 1.48502 * 109.46801 * 329.99581 * 22 20 18 26 26 C 1.46846 * 110.99998 * 190.25565 * 12 11 10 27 27 C 1.38210 * 120.00361 * 89.99599 * 6 5 3 28 28 H 1.08999 * 109.47972 * 299.99551 * 1 2 3 29 29 H 1.09005 * 109.47667 * 60.00569 * 1 2 3 30 30 H 1.09005 * 109.46825 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47327 * 59.99808 * 5 3 2 32 32 H 1.08999 * 109.46906 * 299.99503 * 5 3 2 33 33 H 1.07995 * 120.00497 * 359.97438 * 7 6 5 34 34 H 1.07993 * 119.99812 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.00234 * 180.20720 * 9 8 7 36 36 H 1.08999 * 109.47078 * 149.72011 * 11 10 9 37 37 H 1.09003 * 109.46796 * 29.72378 * 11 10 9 38 38 H 1.08995 * 109.45831 * 65.81919 * 13 12 11 39 39 H 1.08998 * 109.45719 * 305.85769 * 13 12 11 40 40 H 1.09004 * 109.50109 * 60.76189 * 14 13 12 41 41 H 1.08997 * 109.49831 * 180.87683 * 14 13 12 42 42 H 1.08995 * 109.52025 * 177.56309 * 15 14 13 43 43 H 1.09002 * 109.52325 * 297.75085 * 15 14 13 44 44 H 0.97005 * 120.00033 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.46639 * 54.13954 * 26 12 11 46 46 H 1.09010 * 109.45973 * 294.17120 * 26 12 11 47 47 H 1.07996 * 119.99699 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4030 2.2093 -0.0005 5 6 3.5662 1.2751 -0.0006 6 6 3.9934 2.7203 0.0002 7 6 4.1893 3.3837 -1.1970 8 6 4.5806 4.7093 -1.1964 9 6 4.7731 5.3728 0.0013 10 6 4.5824 4.7080 1.1980 11 6 4.7964 5.4297 2.5035 12 7 6.1939 5.2709 2.9274 13 6 7.1061 5.9506 1.9987 14 6 8.5541 5.6433 2.3874 15 6 8.8051 6.1213 3.8202 16 6 7.8105 5.4349 4.7605 17 1 7.9717 4.3572 4.7371 18 6 8.0118 5.9443 6.1645 19 1 7.2023 6.4389 6.6808 20 6 9.2293 5.7786 6.7900 21 7 9.4048 6.2226 8.0153 22 14 10.6295 4.9234 5.8968 23 1 11.4291 5.9291 5.1522 24 1 11.4978 4.2330 6.8840 25 1 10.0745 3.9284 4.9443 26 6 6.3840 5.7482 4.3030 27 6 4.1897 3.3823 1.1974 28 1 -0.3635 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9556 0.7812 -0.8907 32 1 3.9562 0.7809 0.8892 33 1 4.0366 2.8662 -2.1325 34 1 4.7332 5.2277 -2.1314 35 1 5.0756 6.4095 0.0018 36 1 4.1364 5.0105 3.2629 37 1 4.5743 6.4890 2.3736 38 1 6.9376 7.0264 2.0463 39 1 6.9199 5.5986 0.9841 40 1 8.7270 4.5688 2.3266 41 1 9.2309 6.1605 1.7074 42 1 9.8224 5.8656 4.1165 43 1 8.6701 7.2017 3.8728 44 1 10.2615 6.1064 8.4553 45 1 5.6735 5.2493 4.9620 46 1 6.2190 6.8251 4.3399 47 1 4.0366 2.8640 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237479507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:19 Heat of formation + Delta-G solvation = -61.125398 kcal Electronic energy + Delta-G solvation = -26330.472430 eV Core-core repulsion = 22670.902114 eV Total energy + Delta-G solvation = -3659.570316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81990 -39.60216 -38.16122 -36.71907 -34.42641 -32.99564 -32.23882 -30.78481 -30.25775 -29.02364 -27.10985 -26.09790 -24.90772 -22.73232 -22.51705 -21.71272 -20.95934 -20.08523 -18.83095 -17.90567 -16.94738 -16.83594 -16.70202 -16.33959 -15.66809 -15.49132 -15.02748 -14.33318 -14.13162 -13.94132 -13.88103 -13.62304 -13.46664 -13.23919 -13.01645 -12.66668 -12.51330 -12.40103 -12.31735 -12.17111 -12.08910 -11.49651 -11.25684 -11.10677 -11.03272 -10.97212 -10.93564 -10.75832 -10.45864 -10.05230 -9.94147 -9.67684 -9.11493 -8.92171 -8.79561 -8.69903 -8.49321 -7.79983 -6.05151 -4.04144 1.20485 1.40477 1.95657 2.50394 3.30200 3.41327 3.45030 3.71233 4.34188 4.44408 4.50903 4.62048 4.69607 4.78041 4.85338 4.89825 5.02100 5.06488 5.18873 5.19837 5.26673 5.37263 5.41769 5.49646 5.55911 5.66665 5.74501 5.87730 5.97818 6.03039 6.04399 6.11223 6.17825 6.30330 6.34465 6.41421 6.44834 6.50694 6.63094 6.65935 6.82802 6.86944 6.96903 7.22043 7.43086 7.48677 7.60465 7.67362 7.88676 8.54092 8.98080 9.57825 11.08105 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.002778 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.798665 B =10077.879428 C =10678.001803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.496 6.496 5 C -0.071 4.071 6 C -0.085 4.085 7 C -0.108 4.108 8 C -0.121 4.121 9 C -0.108 4.108 10 C -0.064 4.064 11 C 0.090 3.910 12 N -0.535 5.535 13 C 0.059 3.941 14 C -0.119 4.119 15 C -0.123 4.123 16 C 0.021 3.979 17 H 0.035 0.965 18 C -0.514 4.514 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.903 5.903 22 Si 0.888 3.112 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.263 1.263 26 C 0.077 3.923 27 C -0.080 4.080 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.026 0.974 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.263 0.737 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -9.688 -20.603 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.382 6.382 5 C -0.108 4.108 6 C -0.085 4.085 7 C -0.126 4.126 8 C -0.139 4.139 9 C -0.127 4.127 10 C -0.065 4.065 11 C -0.037 4.037 12 N -0.260 5.260 13 C -0.068 4.068 14 C -0.156 4.156 15 C -0.160 4.160 16 C 0.002 3.998 17 H 0.053 0.947 18 C -0.552 4.552 19 H 0.090 0.910 20 C -0.131 4.131 21 N -0.541 5.541 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.227 1.227 25 H -0.188 1.188 26 C -0.050 4.050 27 C -0.098 4.098 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.550 -9.859 -20.436 26.428 hybrid contribution 0.485 0.587 -0.359 0.842 sum -13.065 -9.272 -20.795 26.251 Atomic orbital electron populations 1.23258 0.76320 1.03637 1.02608 1.86507 1.23476 1.33615 1.84370 1.23784 0.92032 0.81339 0.72658 1.90707 1.67024 1.36261 1.44232 1.20298 0.87622 0.96078 1.06793 1.19158 1.01684 0.93688 0.93943 1.20876 0.99912 0.94910 0.96898 1.21008 1.00431 0.94591 0.97862 1.21102 0.99577 0.99885 0.92117 1.19795 0.97760 0.94115 0.94792 1.21037 0.91526 0.97536 0.93632 1.62022 1.02296 1.58125 1.03541 1.22077 0.93277 0.95517 0.95972 1.21642 0.94660 1.01381 0.97964 1.22027 0.99934 1.00538 0.93507 1.19155 0.89690 0.96745 0.94238 0.94657 1.21005 0.99187 1.38173 0.96825 0.90972 1.24984 0.98521 0.94955 0.94665 1.69901 1.24722 1.46816 1.12680 0.86823 0.82230 0.80223 0.78857 1.20760 1.22678 1.18780 1.22112 0.99893 0.96981 0.85987 1.20847 0.97841 0.93974 0.97146 0.91820 0.91965 0.88113 0.86811 0.86499 0.86516 0.86165 0.86277 0.90029 0.94318 0.95550 0.91414 0.91882 0.92900 0.93592 0.92600 0.92713 0.91441 0.95512 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.55 101.05 1.07 1.30 16 2 O -0.36 -3.31 10.57 -39.27 -0.41 -3.72 16 3 C 0.46 4.79 7.95 36.00 0.29 5.08 16 4 O -0.50 -6.79 15.78 -18.75 -0.30 -7.08 16 5 C -0.07 -0.59 5.94 -29.04 -0.17 -0.77 16 6 C -0.08 -0.94 4.37 -104.62 -0.46 -1.40 16 7 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 8 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 9 C -0.11 -1.31 7.90 -39.58 -0.31 -1.62 16 10 C -0.06 -0.86 4.89 -104.62 -0.51 -1.37 16 11 C 0.09 1.31 5.12 -4.98 -0.03 1.29 16 12 N -0.54 -9.24 4.65 -236.11 -1.10 -10.34 16 13 C 0.06 0.97 5.17 -3.83 -0.02 0.95 16 14 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 15 C -0.12 -2.66 4.73 -26.61 -0.13 -2.79 16 16 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 17 H 0.04 0.88 7.21 -51.93 -0.37 0.50 16 18 C -0.51 -14.38 9.15 -34.44 -0.31 -14.69 16 19 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 20 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 21 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 22 Si 0.89 22.23 24.35 -169.99 -4.14 18.09 16 23 H -0.28 -6.85 6.89 56.52 0.39 -6.46 16 24 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 26 C 0.08 1.55 4.68 -3.83 -0.02 1.53 16 27 C -0.08 -1.01 9.36 -39.58 -0.37 -1.38 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.12 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.32 7.97 -52.49 -0.42 0.90 16 36 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.04 0.54 8.06 -51.93 -0.42 0.13 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.99 5.77 -51.93 -0.30 0.69 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 46 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -33.03 372.84 -9.34 -42.37 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.60 Total: -0.81 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.19 Total: -17.14 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.32 Total: -37.31 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.71 Total: -10.81 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.03 -9.34 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237479507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.756 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds