Wall clock time and date at job start Tue Mar 31 2020 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99928 * 2 1 4 4 O 1.20826 * 120.00403 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00032 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.47429 * 179.97438 * 5 3 2 7 7 C 1.38255 * 120.00068 * 89.99830 * 6 5 3 8 8 C 1.38209 * 120.00106 * 180.02562 * 7 6 5 9 9 C 1.38264 * 119.99857 * 359.96967 * 8 7 6 10 10 C 1.38212 * 119.99607 * 0.02874 * 9 8 7 11 11 C 1.50704 * 119.99602 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.47283 * 89.99779 * 11 10 9 13 13 C 1.46847 * 111.00044 * 66.04446 * 12 11 10 14 14 C 1.53041 * 109.52573 * 174.16335 * 13 12 11 15 15 C 1.53120 * 109.27742 * 59.17635 * 14 13 12 16 16 C 1.53120 * 109.16213 * 302.34695 * 15 14 13 17 17 H 1.08993 * 109.50741 * 297.71418 * 16 15 14 18 18 C 1.50699 * 109.49928 * 177.63223 * 16 15 14 19 19 H 1.07998 * 120.00326 * 245.43510 * 18 16 15 20 20 C 1.37877 * 119.99621 * 65.44001 * 18 16 15 21 21 N 1.31510 * 120.00587 * 9.56535 * 20 18 16 22 22 Si 1.86803 * 119.99744 * 189.56234 * 20 18 16 23 23 H 1.48494 * 109.47272 * 94.98990 * 22 20 18 24 24 H 1.48501 * 109.47413 * 214.98839 * 22 20 18 25 25 H 1.48503 * 109.47510 * 334.98984 * 22 20 18 26 26 C 1.46847 * 110.99962 * 301.83485 * 12 11 10 27 27 C 1.38209 * 119.99799 * 269.97389 * 6 5 3 28 28 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47402 * 300.00755 * 1 2 3 30 30 H 1.09002 * 109.46884 * 60.00160 * 1 2 3 31 31 H 1.09001 * 109.47111 * 59.99483 * 5 3 2 32 32 H 1.09005 * 109.46819 * 299.99902 * 5 3 2 33 33 H 1.08003 * 120.00066 * 0.28060 * 7 6 5 34 34 H 1.08006 * 120.00377 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.99532 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.47046 * 210.00087 * 11 10 9 37 37 H 1.09003 * 109.47035 * 329.99745 * 11 10 9 38 38 H 1.08996 * 109.46363 * 294.17848 * 13 12 11 39 39 H 1.09002 * 109.46275 * 54.14525 * 13 12 11 40 40 H 1.08994 * 109.50502 * 179.12368 * 14 13 12 41 41 H 1.09002 * 109.49748 * 299.24101 * 14 13 12 42 42 H 1.09001 * 109.52059 * 62.25812 * 15 14 13 43 43 H 1.09002 * 109.51677 * 182.44165 * 15 14 13 44 44 H 0.96997 * 120.00754 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.46475 * 305.85344 * 26 12 11 46 46 H 1.09004 * 109.46203 * 65.82587 * 26 12 11 47 47 H 1.07999 * 119.99992 * 0.04055 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9936 2.7200 -0.0002 7 6 4.1891 3.3837 1.1968 8 6 4.5805 4.7092 1.1961 9 6 4.7772 5.3713 -0.0017 10 6 4.5818 4.7077 -1.1982 11 6 4.7956 5.4296 -2.5037 12 7 6.1933 5.2719 -2.9273 13 6 6.4904 3.8705 -3.2502 14 6 7.9054 3.7668 -3.8240 15 6 8.9082 4.2968 -2.7953 16 6 8.5475 5.7419 -2.4402 17 1 8.6246 6.3656 -3.3307 18 6 9.4948 6.2520 -1.3850 19 1 9.1251 6.4971 -0.4003 20 6 10.8336 6.4058 -1.6768 21 7 11.2537 6.2903 -2.9176 22 14 12.0506 6.7785 -0.3095 23 1 12.6634 5.5124 0.1665 24 1 13.1129 7.6796 -0.8243 25 1 11.3432 7.4399 0.8163 26 6 7.1140 5.7883 -1.9065 27 6 4.1906 3.3817 -1.1975 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7805 -0.8891 32 1 3.9556 0.7810 0.8909 33 1 4.0400 2.8652 2.1324 34 1 4.7328 5.2279 2.1312 35 1 5.0834 6.4070 -0.0021 36 1 4.1361 5.0097 -3.2633 37 1 4.5724 6.4886 -2.3741 38 1 6.4203 3.2667 -2.3455 39 1 5.7727 3.5072 -3.9857 40 1 8.1313 2.7245 -4.0490 41 1 7.9724 4.3595 -4.7363 42 1 8.8689 3.6802 -1.8973 43 1 9.9130 4.2650 -3.2165 44 1 12.1956 6.3982 -3.1228 45 1 6.8492 6.8180 -1.6661 46 1 7.0409 5.1754 -1.0081 47 1 4.0376 2.8633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237479515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:24 Heat of formation + Delta-G solvation = -69.640737 kcal Electronic energy + Delta-G solvation = -26837.868595 eV Core-core repulsion = 23177.929026 eV Total energy + Delta-G solvation = -3659.939569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.79902 -39.68093 -37.81746 -36.66197 -34.22311 -33.00225 -32.03101 -30.36503 -29.79390 -28.93157 -27.05746 -25.92385 -24.89694 -22.63784 -22.33273 -21.30585 -21.24792 -20.08646 -18.51989 -17.87762 -16.86951 -16.80289 -16.37331 -16.20357 -15.38382 -15.21562 -14.83067 -14.29374 -14.12220 -13.92827 -13.79420 -13.61913 -13.21907 -13.14297 -12.60834 -12.52749 -12.35153 -12.28413 -12.19334 -11.95683 -11.67694 -11.37083 -11.09197 -11.07843 -10.94131 -10.91012 -10.72695 -10.64661 -10.58868 -10.12641 -9.87859 -9.44837 -9.01619 -8.72915 -8.68648 -8.54285 -8.26099 -7.65377 -5.97725 -3.98838 1.33345 1.50370 1.98276 2.53939 3.32279 3.39736 3.42420 3.85989 4.40077 4.44535 4.64936 4.71117 4.74732 4.78883 4.86552 5.00584 5.12298 5.16965 5.20647 5.25275 5.34507 5.44689 5.55855 5.67652 5.74494 5.83499 6.01085 6.03410 6.09456 6.16324 6.17650 6.27887 6.46551 6.51265 6.53712 6.57636 6.69903 6.74333 6.77426 6.98464 7.09569 7.21717 7.34555 7.51470 7.67111 7.77588 7.81755 8.04550 8.15035 8.51415 9.05577 9.63891 11.11520 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.003027 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.584336 B = 9247.081215 C = 9645.911008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.495 6.495 5 C -0.070 4.070 6 C -0.087 4.087 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.095 4.095 10 C -0.109 4.109 11 C 0.090 3.910 12 N -0.526 5.526 13 C 0.060 3.940 14 C -0.118 4.118 15 C -0.105 4.105 16 C 0.053 3.947 17 H 0.040 0.960 18 C -0.514 4.514 19 H 0.053 0.947 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.885 3.115 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.066 3.934 27 C -0.091 4.091 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.259 0.741 45 H 0.057 0.943 46 H 0.026 0.974 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 -11.626 4.831 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.381 6.381 5 C -0.107 4.107 6 C -0.087 4.087 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.114 4.114 10 C -0.111 4.111 11 C -0.038 4.038 12 N -0.248 5.248 13 C -0.068 4.068 14 C -0.155 4.155 15 C -0.143 4.143 16 C 0.034 3.966 17 H 0.058 0.942 18 C -0.553 4.553 19 H 0.071 0.929 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.713 3.287 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.061 4.061 27 C -0.110 4.110 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.428 -11.019 4.258 21.889 hybrid contribution 0.445 -0.317 1.570 1.662 sum -17.983 -11.336 5.827 22.043 Atomic orbital electron populations 1.23250 0.76389 1.03594 1.02589 1.86509 1.23428 1.33666 1.84414 1.23804 0.92040 0.81314 0.72666 1.90706 1.67015 1.36233 1.44175 1.20291 0.87553 0.96187 1.06663 1.19111 1.02035 0.93562 0.94015 1.20868 0.99873 0.94923 0.96831 1.21074 0.99872 0.94586 0.98141 1.21161 0.98060 1.00195 0.91938 1.20733 0.98493 0.94701 0.97153 1.21298 0.91596 0.99824 0.91108 1.62438 1.01089 1.18787 1.42525 1.22065 0.97606 0.88725 0.98400 1.21665 0.94357 0.99226 1.00297 1.21585 0.98706 0.98321 0.95670 1.18677 0.88148 0.92784 0.96980 0.94205 1.21105 0.92691 1.43766 0.97740 0.92902 1.24919 0.98424 0.95212 0.95075 1.69974 1.15198 1.50023 1.17249 0.86702 0.81287 0.78091 0.82659 1.20810 1.21335 1.19941 1.22354 0.94427 0.97724 0.91576 1.20815 0.99001 0.94301 0.96874 0.88134 0.91955 0.91883 0.86749 0.86803 0.86563 0.86062 0.85864 0.90716 0.90155 0.95251 0.92607 0.93577 0.92007 0.94983 0.90988 0.93110 0.92429 0.95564 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.48 10.57 -39.26 -0.41 -3.89 16 3 C 0.46 5.10 7.95 36.01 0.29 5.39 16 4 O -0.50 -7.10 15.78 -18.75 -0.30 -7.40 16 5 C -0.07 -0.66 5.94 -29.04 -0.17 -0.83 16 6 C -0.09 -1.10 4.37 -104.63 -0.46 -1.55 16 7 C -0.11 -1.35 9.70 -39.59 -0.38 -1.74 16 8 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 9 C -0.09 -1.40 8.02 -39.58 -0.32 -1.72 16 10 C -0.11 -1.62 4.04 -104.62 -0.42 -2.04 16 11 C 0.09 1.36 5.56 -4.98 -0.03 1.33 16 12 N -0.53 -9.62 4.86 -236.11 -1.15 -10.77 16 13 C 0.06 1.04 4.83 -3.83 -0.02 1.02 16 14 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 15 C -0.10 -2.45 5.09 -26.61 -0.14 -2.59 16 16 C 0.05 1.32 2.13 -91.69 -0.19 1.13 16 17 H 0.04 1.12 8.09 -51.93 -0.42 0.70 16 18 C -0.51 -14.11 8.48 -34.44 -0.29 -14.41 16 19 H 0.05 1.44 7.77 -52.49 -0.41 1.03 16 20 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 21 N -0.89 -25.59 12.18 55.43 0.68 -24.91 16 22 Si 0.88 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.07 1.39 3.77 -3.83 -0.01 1.37 16 27 C -0.09 -1.25 7.77 -39.59 -0.31 -1.56 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.11 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.12 1.77 8.02 -52.48 -0.42 1.35 16 36 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 37 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 38 H 0.03 0.51 6.55 -51.93 -0.34 0.17 16 39 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.88 6.98 -51.93 -0.36 1.51 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 46 H 0.03 0.57 6.47 -51.93 -0.34 0.23 16 47 H 0.12 1.45 8.03 -52.49 -0.42 1.03 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -31.68 377.42 -10.30 -41.98 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.74 Total: 0.57 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.05 Total: -17.60 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.47 Total: -35.68 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.71 Total: -11.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.68 -10.30 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237479515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.662 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds