Wall clock time and date at job start Tue Mar 31 2020 12:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99772 * 2 1 4 4 O 1.20826 * 120.00170 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99668 * 180.02562 * 3 2 1 6 6 C 1.50708 * 109.46804 * 180.02562 * 5 3 2 7 7 C 1.38254 * 119.99823 * 270.02203 * 6 5 3 8 8 C 1.38216 * 119.99725 * 179.97438 * 7 6 5 9 9 C 1.38257 * 120.00107 * 0.02562 * 8 7 6 10 10 C 1.38209 * 119.99877 * 359.69851 * 9 8 7 11 11 C 1.50698 * 120.00297 * 180.29937 * 10 9 8 12 12 N 1.46904 * 109.47140 * 270.25966 * 11 10 9 13 13 C 1.46847 * 110.99827 * 294.20627 * 12 11 10 14 14 C 1.53038 * 109.52553 * 174.16379 * 13 12 11 15 15 C 1.53111 * 109.27854 * 59.17587 * 14 13 12 16 16 C 1.50702 * 109.57684 * 182.41245 * 15 14 13 17 17 H 1.07995 * 120.00536 * 119.71072 * 16 15 14 18 18 C 1.37887 * 119.99540 * 299.71772 * 16 15 14 19 19 N 1.31513 * 119.99714 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00165 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47032 * 90.00408 * 20 18 16 22 22 H 1.48499 * 109.47310 * 209.99800 * 20 18 16 23 23 H 1.48493 * 109.47255 * 329.99972 * 20 18 16 24 24 C 1.53118 * 109.16585 * 302.34913 * 15 14 13 25 25 C 1.46847 * 110.99920 * 169.99994 * 12 11 10 26 26 C 1.38212 * 119.99857 * 90.00607 * 6 5 3 27 27 H 1.09004 * 109.46499 * 299.99923 * 1 2 3 28 28 H 1.08998 * 109.47560 * 59.99444 * 1 2 3 29 29 H 1.08995 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46729 * 60.00341 * 5 3 2 31 31 H 1.08992 * 109.47184 * 300.00030 * 5 3 2 32 32 H 1.07997 * 120.00472 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.99686 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.00093 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47001 * 30.25451 * 11 10 9 36 36 H 1.08998 * 109.47342 * 150.25465 * 11 10 9 37 37 H 1.09006 * 109.46250 * 294.17781 * 13 12 11 38 38 H 1.09000 * 109.46306 * 54.14471 * 13 12 11 39 39 H 1.09005 * 109.49797 * 299.23770 * 14 13 12 40 40 H 1.09001 * 109.53467 * 179.14121 * 14 13 12 41 41 H 1.09007 * 109.52071 * 62.25498 * 15 14 13 42 42 H 0.97001 * 120.00412 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.50197 * 297.71516 * 24 15 14 44 44 H 1.08995 * 109.53532 * 177.61527 * 24 15 14 45 45 H 1.08996 * 109.46201 * 305.85168 * 25 12 11 46 46 H 1.08996 * 109.46454 * 65.83478 * 25 12 11 47 47 H 1.08002 * 119.99812 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9936 2.7201 0.0002 7 6 4.1886 3.3839 -1.1968 8 6 4.5800 4.7095 -1.1961 9 6 4.7769 5.3715 0.0016 10 6 4.5764 4.7095 1.1981 11 6 4.7845 5.4329 2.5036 12 7 6.1819 5.2811 2.9303 13 6 6.4855 3.8801 3.2490 14 6 7.9795 3.7357 3.5477 15 6 8.3487 4.6386 4.7278 16 6 9.8299 4.5466 4.9899 17 1 10.4464 5.4307 4.9220 18 6 10.3981 3.3334 5.3164 19 7 11.6908 3.2529 5.5447 20 14 9.3319 1.8042 5.4345 21 1 9.2729 1.1383 4.1084 22 1 9.9141 0.8705 6.4317 23 1 7.9610 2.1880 5.8571 24 6 7.9780 6.0851 4.3892 25 6 6.4840 6.1614 4.0662 26 6 4.1901 3.3819 1.1975 27 1 -0.3632 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 4.0344 2.8669 -2.1324 33 1 4.7327 5.2279 -2.1312 34 1 5.0831 6.4072 0.0021 35 1 4.5575 6.4910 2.3729 36 1 4.1251 5.0110 3.2620 37 1 5.9093 3.5731 4.1219 38 1 6.2222 3.2492 2.4000 39 1 8.5560 4.0294 2.6704 40 1 8.2024 2.6987 3.7991 41 1 7.8013 4.3204 5.6151 42 1 12.0906 2.3995 5.7741 43 1 8.5545 6.4158 3.5252 44 1 8.1993 6.7272 5.2417 45 1 6.2196 7.1875 3.8107 46 1 5.9081 5.8436 4.9352 47 1 4.0371 2.8635 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237485954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:38 Heat of formation + Delta-G solvation = -60.593499 kcal Electronic energy + Delta-G solvation = -26545.261972 eV Core-core repulsion = 22885.714721 eV Total energy + Delta-G solvation = -3659.547251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84281 -39.63030 -38.17815 -36.73827 -34.49586 -33.11448 -32.01730 -30.75837 -30.06811 -29.07632 -27.22942 -26.73421 -24.37028 -22.77682 -22.32007 -21.76717 -21.24956 -20.03738 -18.80071 -17.92566 -16.94924 -16.85637 -16.66815 -16.36581 -15.76069 -15.52116 -15.08882 -14.41535 -14.25198 -13.91925 -13.83985 -13.73087 -13.31721 -13.14208 -13.00858 -12.78567 -12.46962 -12.41656 -12.28501 -12.16612 -11.91820 -11.64329 -11.46859 -11.12763 -11.09240 -11.01169 -10.77856 -10.77297 -10.52794 -10.04928 -9.87909 -9.59228 -9.06392 -8.93247 -8.80089 -8.69868 -8.47979 -7.92063 -6.03295 -4.01241 1.22820 1.36951 1.93497 2.49168 3.28489 3.38274 3.40759 3.69663 4.32866 4.40222 4.44169 4.62354 4.68638 4.76036 4.82371 4.83761 5.02407 5.03745 5.17689 5.17992 5.27622 5.33190 5.45716 5.52668 5.55363 5.61182 5.73029 5.86992 5.93486 5.96017 6.02858 6.09369 6.13682 6.20762 6.38854 6.41185 6.44633 6.47860 6.63832 6.77118 6.87099 6.95148 6.97989 7.25830 7.43015 7.46625 7.55101 7.67426 7.82926 8.57923 9.01629 9.59906 11.10340 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003302 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.812114 B = 8477.825173 C = 9579.065011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.497 6.497 5 C -0.072 4.072 6 C -0.084 4.084 7 C -0.106 4.106 8 C -0.120 4.120 9 C -0.091 4.091 10 C -0.067 4.067 11 C 0.091 3.909 12 N -0.527 5.527 13 C 0.052 3.948 14 C -0.115 4.115 15 C 0.013 3.987 16 C -0.509 4.509 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.299 1.299 23 H -0.268 1.268 24 C -0.096 4.096 25 C 0.057 3.943 26 C -0.094 4.094 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.026 0.974 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.464 -3.162 -13.212 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.383 6.383 5 C -0.109 4.109 6 C -0.084 4.084 7 C -0.124 4.124 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.067 4.067 11 C -0.037 4.037 12 N -0.252 5.252 13 C -0.075 4.075 14 C -0.152 4.152 15 C -0.006 4.006 16 C -0.547 4.547 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.193 1.193 24 C -0.133 4.133 25 C -0.071 4.071 26 C -0.113 4.113 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.044 0.956 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.248 -2.827 -13.525 25.345 hybrid contribution -1.175 -1.235 0.722 1.851 sum -22.423 -4.062 -12.802 26.138 Atomic orbital electron populations 1.23259 0.76323 1.03653 1.02579 1.86512 1.23473 1.33596 1.84342 1.23779 0.92016 0.81338 0.72624 1.90701 1.67033 1.36249 1.44301 1.20311 0.87643 0.96115 1.06856 1.19107 1.01774 0.93652 0.93899 1.20890 0.99717 0.94934 0.96857 1.21062 1.00143 0.94537 0.98066 1.21038 0.98085 1.00186 0.91656 1.19727 0.98114 0.93728 0.95166 1.21043 0.90102 0.99796 0.92748 1.61964 1.18826 1.07488 1.36928 1.22279 0.98610 0.88329 0.98320 1.21996 0.92368 0.99552 1.01313 1.19186 0.97258 0.91381 0.92794 1.21070 0.91019 0.96077 1.46486 0.90872 1.25029 0.94720 0.98836 0.94745 1.69902 1.10462 1.25631 1.48228 0.86851 0.80988 0.83247 0.77172 1.20544 1.22628 1.19289 1.21491 0.92204 0.99001 1.00652 1.22203 0.98686 0.95600 0.90572 1.20875 0.99066 0.94263 0.97090 0.91887 0.91923 0.88092 0.86652 0.86634 0.86435 0.86007 0.85819 0.90108 0.94469 0.95905 0.91543 0.91308 0.93496 0.96139 0.92774 0.91772 0.92355 0.91776 0.95607 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.43 10.57 -39.25 -0.41 -3.84 16 3 C 0.46 4.95 7.95 36.01 0.29 5.24 16 4 O -0.50 -6.86 15.78 -18.75 -0.30 -7.16 16 5 C -0.07 -0.65 5.94 -29.03 -0.17 -0.82 16 6 C -0.08 -0.98 4.37 -104.62 -0.46 -1.43 16 7 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 8 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 9 C -0.09 -1.13 9.70 -39.59 -0.38 -1.51 16 10 C -0.07 -0.90 4.89 -104.63 -0.51 -1.41 16 11 C 0.09 1.24 5.12 -4.97 -0.03 1.22 16 12 N -0.53 -8.73 4.65 -236.11 -1.10 -9.83 16 13 C 0.05 0.94 5.16 -3.83 -0.02 0.92 16 14 C -0.11 -2.51 4.84 -26.65 -0.13 -2.64 16 15 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 16 C -0.51 -14.36 9.15 -34.44 -0.31 -14.67 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 19 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 20 Si 0.89 22.14 24.37 -169.99 -4.14 18.00 16 21 H -0.28 -6.74 6.89 56.52 0.39 -6.35 16 22 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.27 -6.41 6.53 56.52 0.37 -6.05 16 24 C -0.10 -1.91 5.32 -26.65 -0.14 -2.05 16 25 C 0.06 0.94 5.46 -3.83 -0.02 0.92 16 26 C -0.09 -1.22 7.53 -39.58 -0.30 -1.52 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.12 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.12 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 36 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.12 5.75 -51.93 -0.30 0.82 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.05 1.08 3.38 -51.93 -0.18 0.90 16 41 H 0.02 0.50 7.19 -51.92 -0.37 0.13 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 46 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.12 1.45 7.95 -52.49 -0.42 1.03 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -33.31 372.83 -9.32 -42.63 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.60 Total: -0.55 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.16 Total: -17.74 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.32 Total: -36.96 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.71 Total: -11.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.31 -9.32 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237485954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.962 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds