Wall clock time and date at job start Tue Mar 31 2020 11:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.46774 * 2 1 4 4 C 1.34715 * 117.00061 * 179.97438 * 3 2 1 5 5 O 1.21475 * 119.99833 * 0.02562 * 4 3 2 6 6 C 1.47728 * 120.00213 * 179.97438 * 4 3 2 7 7 C 1.39645 * 120.14658 * 0.02562 * 6 4 3 8 8 C 1.37925 * 119.84533 * 179.97438 * 7 6 4 9 9 C 1.38383 * 120.15197 * 359.97438 * 8 7 6 10 10 C 1.38348 * 120.30547 * 359.97438 * 9 8 7 11 11 C 1.37972 * 120.14455 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.07309 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46915 * 260.02149 * 12 11 10 14 14 C 1.46849 * 110.99776 * 66.04987 * 13 12 11 15 15 C 1.53038 * 109.52228 * 185.83404 * 14 13 12 16 16 C 1.53118 * 109.27853 * 300.82283 * 15 14 13 17 17 C 1.53122 * 109.16307 * 57.65314 * 16 15 14 18 18 H 1.08998 * 109.50029 * 62.28523 * 17 16 15 19 19 C 1.50701 * 109.50083 * 182.36433 * 17 16 15 20 20 H 1.08007 * 119.99784 * 120.00472 * 19 17 16 21 21 C 1.37877 * 120.00078 * 299.99440 * 19 17 16 22 22 N 1.31509 * 120.00074 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99621 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47387 * 60.00565 * 23 21 19 25 25 H 1.48501 * 109.46711 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47201 * 300.00054 * 23 21 19 27 27 C 1.46846 * 110.99832 * 190.25379 * 13 12 11 28 28 H 1.09008 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47555 * 299.99801 * 1 2 3 30 30 H 1.09003 * 109.47080 * 60.00372 * 1 2 3 31 31 H 1.08998 * 109.47555 * 240.00199 * 2 1 3 32 32 H 1.09003 * 109.47080 * 119.99628 * 2 1 3 33 33 H 1.07998 * 120.07827 * 359.97438 * 7 6 4 34 34 H 1.08007 * 119.92284 * 179.72249 * 8 7 6 35 35 H 1.08001 * 119.85180 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.92868 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47134 * 20.02394 * 12 11 10 38 38 H 1.08991 * 109.46790 * 140.02573 * 12 11 10 39 39 H 1.08997 * 109.46226 * 305.85241 * 14 13 12 40 40 H 1.09005 * 109.46426 * 65.82187 * 14 13 12 41 41 H 1.09003 * 109.50175 * 60.76347 * 15 14 13 42 42 H 1.09001 * 109.50368 * 180.87976 * 15 14 13 43 43 H 1.09001 * 109.52203 * 177.55558 * 16 15 14 44 44 H 1.08999 * 109.52501 * 297.67926 * 16 15 14 45 45 H 0.96998 * 120.00103 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.46759 * 294.18362 * 27 13 12 47 47 H 1.09003 * 109.45894 * 54.14656 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3494 1.5456 0.0005 5 8 4.0894 0.5823 0.0005 6 6 3.9140 2.9107 0.0000 7 6 3.0661 4.0203 -0.0005 8 6 3.6000 5.2921 -0.0005 9 6 4.9723 5.4699 0.0006 10 6 5.8181 4.3750 0.0022 11 6 5.2975 3.0973 0.0022 12 6 6.2203 1.9058 0.0033 13 7 6.3315 1.3713 -1.3605 14 6 7.0006 2.3305 -2.2487 15 6 6.9692 1.8048 -3.6856 16 6 7.6767 0.4481 -3.7431 17 6 6.9905 -0.5181 -2.7734 18 1 5.9562 -0.6698 -3.0819 19 6 7.7167 -1.8386 -2.7809 20 1 8.1543 -2.2194 -1.8698 21 6 7.8223 -2.5606 -3.9507 22 7 7.2898 -2.0968 -5.0601 23 14 8.7219 -4.1978 -3.9597 24 1 8.0554 -5.1340 -3.0193 25 1 8.6954 -4.7695 -5.3300 26 1 10.1305 -3.9910 -3.5373 27 6 7.0214 0.0750 -1.3630 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9949 3.8830 -0.0010 34 1 2.9454 6.1512 -0.0054 35 1 5.3851 6.4679 0.0002 36 1 6.8882 4.5208 0.0026 37 1 7.2059 2.2099 0.3559 38 1 5.8196 1.1367 0.6634 39 1 6.4851 3.2897 -2.2015 40 1 8.0355 2.4585 -1.9313 41 1 5.9345 1.6896 -4.0084 42 1 7.4795 2.5095 -4.3421 43 1 7.6188 0.0498 -4.7560 44 1 8.7219 0.5700 -3.4588 45 1 7.3644 -2.6046 -5.8832 46 1 8.0561 0.2136 -1.0498 47 1 6.5210 -0.6040 -0.6725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237887013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:37 Heat of formation + Delta-G solvation = -59.968286 kcal Electronic energy + Delta-G solvation = -27464.880096 eV Core-core repulsion = 23805.359956 eV Total energy + Delta-G solvation = -3659.520140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55392 -39.00170 -37.74886 -36.31496 -33.93394 -32.16976 -32.06183 -30.96593 -30.57066 -29.61147 -26.05607 -24.86192 -24.38582 -22.90962 -22.20965 -21.48194 -21.21574 -20.24771 -18.47135 -17.81142 -16.68513 -16.39604 -16.24697 -15.75560 -15.27144 -14.96752 -14.60771 -14.41528 -13.98655 -13.85888 -13.58604 -13.27428 -13.08367 -12.81377 -12.67869 -12.62156 -12.30830 -12.01551 -11.83607 -11.77093 -11.63728 -11.56276 -11.26919 -11.07588 -10.86946 -10.62509 -10.57461 -10.37553 -10.02911 -9.80614 -9.67156 -9.36581 -9.07300 -8.98263 -8.76228 -8.59530 -8.21403 -7.46701 -5.89030 -3.94538 0.76679 1.28213 2.73903 2.81095 3.37196 3.41272 3.44216 3.76265 4.48662 4.65575 4.73692 4.81256 4.84688 4.94754 4.96657 5.02522 5.23267 5.29402 5.37377 5.40735 5.60740 5.67040 5.74556 5.76561 5.82252 5.86059 5.90492 5.97876 6.08360 6.19552 6.22260 6.32720 6.37865 6.43845 6.54419 6.68230 6.72294 6.80689 6.83441 6.85958 7.12610 7.32865 7.51424 7.81417 7.84887 7.97657 8.06994 8.21541 8.28198 8.59019 9.09514 9.68857 11.16967 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.004170 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.516946 B = 6713.041337 C = 8235.090679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.363 6.363 4 C 0.499 3.501 5 O -0.464 6.464 6 C -0.104 4.104 7 C -0.067 4.067 8 C -0.141 4.141 9 C -0.088 4.088 10 C -0.129 4.129 11 C -0.004 4.004 12 C 0.081 3.919 13 N -0.518 5.518 14 C 0.059 3.941 15 C -0.115 4.115 16 C -0.110 4.110 17 C 0.057 3.943 18 H 0.033 0.967 19 C -0.511 4.511 20 H 0.052 0.948 21 C 0.063 3.937 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.075 3.925 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.029 0.971 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.028 0.972 45 H 0.259 0.741 46 H 0.014 0.986 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 14.252 11.044 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.282 6.282 4 C 0.342 3.658 5 O -0.349 6.349 6 C -0.105 4.105 7 C -0.086 4.086 8 C -0.159 4.159 9 C -0.106 4.106 10 C -0.148 4.148 11 C -0.005 4.005 12 C -0.047 4.047 13 N -0.242 5.242 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.148 4.148 17 C 0.039 3.961 18 H 0.051 0.949 19 C -0.550 4.550 20 H 0.070 0.930 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.051 4.051 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.047 0.953 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.617 13.763 10.667 20.394 hybrid contribution 1.366 -0.817 0.162 1.600 sum -9.251 12.947 10.829 19.247 Atomic orbital electron populations 1.21792 0.92962 1.02841 1.03152 1.22983 0.94880 0.80144 1.03015 1.86479 1.24354 1.32345 1.84997 1.21066 0.80472 0.90026 0.74203 1.90906 1.59132 1.42038 1.42840 1.18933 0.93168 0.90269 1.08149 1.21434 1.00062 0.91670 0.95384 1.21079 0.95296 0.96956 1.02573 1.21346 0.93619 0.98845 0.96802 1.21064 1.00234 0.91493 1.01979 1.20056 0.92418 0.95346 0.92682 1.21306 0.95184 0.94491 0.93670 1.61903 1.52918 1.03735 1.05608 1.22113 0.95282 0.94834 0.94713 1.21649 1.01138 0.98809 0.93713 1.21649 0.96560 0.92179 1.04401 1.18627 0.96945 0.92434 0.88137 0.94924 1.21131 1.34997 1.04047 0.94834 0.92977 1.24921 0.95631 0.97595 0.95677 1.69887 1.45191 1.38190 0.99603 0.86708 0.80271 0.84376 0.76897 1.20348 1.21376 1.20436 1.22241 0.93712 0.87700 1.01454 0.90334 0.91822 0.91551 0.90710 0.91377 0.84745 0.85522 0.85656 0.85426 0.95279 0.87789 0.92574 0.96182 0.92361 0.93760 0.89233 0.95282 0.93130 0.96804 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.11 9.47 -40.53 -0.38 -5.49 16 4 C 0.50 8.08 7.87 34.61 0.27 8.35 16 5 O -0.46 -8.87 12.55 -19.25 -0.24 -9.11 16 6 C -0.10 -1.50 5.87 -104.99 -0.62 -2.12 16 7 C -0.07 -0.78 9.62 -39.17 -0.38 -1.15 16 8 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 9 C -0.09 -0.86 10.04 -39.49 -0.40 -1.26 16 10 C -0.13 -1.54 8.56 -39.64 -0.34 -1.88 16 11 C 0.00 -0.06 4.62 -104.21 -0.48 -0.54 16 12 C 0.08 1.37 4.11 -4.97 -0.02 1.35 16 13 N -0.52 -10.36 3.94 -236.11 -0.93 -11.29 16 14 C 0.06 1.10 5.26 -3.83 -0.02 1.08 16 15 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 16 C -0.11 -2.72 5.02 -26.61 -0.13 -2.86 16 17 C 0.06 1.52 2.26 -91.69 -0.21 1.31 16 18 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.51 -14.59 8.57 -34.44 -0.29 -14.88 16 20 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 21 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -26.13 11.35 55.43 0.63 -25.50 16 23 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.08 1.74 4.68 -3.84 -0.02 1.72 16 28 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.33 7.61 -52.49 -0.40 0.93 16 34 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.36 8.03 -52.49 -0.42 0.94 16 37 H 0.03 0.46 7.98 -51.93 -0.41 0.05 16 38 H 0.10 1.88 5.76 -51.93 -0.30 1.58 16 39 H 0.06 0.95 6.31 -51.93 -0.33 0.63 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 1.50 8.01 -51.93 -0.42 1.09 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -31.51 374.16 -10.62 -42.13 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.64 Total: 0.23 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.67 Total: -13.44 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.30 Total: -36.79 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.63 Total: -14.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.51 -10.62 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237887013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.837 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds