Wall clock time and date at job start Tue Mar 31 2020 11:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47149 * 2 1 4 4 C 1.34712 * 117.00152 * 179.97438 * 3 2 1 5 5 O 1.21476 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.47727 * 120.00088 * 179.97438 * 4 3 2 7 7 C 1.39650 * 120.14621 * 5.22013 * 6 4 3 8 8 C 1.37928 * 119.84512 * 179.97438 * 7 6 4 9 9 C 1.38387 * 120.14958 * 359.97438 * 8 7 6 10 10 C 1.38349 * 120.30135 * 0.02562 * 9 8 7 11 11 C 1.37957 * 120.15378 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.07828 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47213 * 104.62227 * 12 11 10 14 14 C 1.46852 * 110.99622 * 288.71992 * 13 12 11 15 15 C 1.53038 * 109.52311 * 174.16188 * 14 13 12 16 16 C 1.53122 * 109.27734 * 59.17497 * 15 14 13 17 17 C 1.53116 * 109.16549 * 302.34996 * 16 15 14 18 18 H 1.09001 * 109.53298 * 297.69712 * 17 16 15 19 19 C 1.50695 * 109.50347 * 177.59447 * 17 16 15 20 20 H 1.08003 * 119.99804 * 245.14352 * 19 17 16 21 21 C 1.37869 * 120.00004 * 65.15207 * 19 17 16 22 22 N 1.31517 * 120.00551 * 6.89454 * 21 19 17 23 23 Si 1.86804 * 119.99886 * 186.89661 * 21 19 17 24 24 H 1.48503 * 109.47178 * 94.94356 * 23 21 19 25 25 H 1.48506 * 109.47036 * 214.93765 * 23 21 19 26 26 H 1.48494 * 109.47343 * 334.94136 * 23 21 19 27 27 C 1.46843 * 111.00058 * 164.51531 * 13 12 11 28 28 H 1.09003 * 109.46687 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47463 * 300.00002 * 1 2 3 30 30 H 1.08999 * 109.46876 * 60.00565 * 1 2 3 31 31 H 1.08999 * 109.47463 * 239.99998 * 2 1 3 32 32 H 1.09006 * 109.47241 * 119.99574 * 2 1 3 33 33 H 1.07998 * 120.07803 * 359.97438 * 7 6 4 34 34 H 1.07998 * 119.92144 * 180.27382 * 8 7 6 35 35 H 1.07996 * 119.84838 * 179.97438 * 9 8 7 36 36 H 1.08004 * 119.91746 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.47210 * 224.62064 * 12 11 10 38 38 H 1.09003 * 109.47025 * 344.61657 * 12 11 10 39 39 H 1.09006 * 109.46146 * 294.17616 * 14 13 12 40 40 H 1.08993 * 109.46335 * 54.14708 * 14 13 12 41 41 H 1.09007 * 109.50080 * 299.24099 * 15 14 13 42 42 H 1.08994 * 109.50816 * 179.11761 * 15 14 13 43 43 H 1.08996 * 109.52502 * 182.44024 * 16 15 14 44 44 H 1.09000 * 109.51803 * 62.25580 * 16 15 14 45 45 H 0.96994 * 120.00654 * 179.97438 * 22 21 19 46 46 H 1.09006 * 109.45649 * 305.85077 * 27 13 12 47 47 H 1.08993 * 109.47006 * 65.81662 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0895 0.5822 0.0005 6 6 3.9141 2.9107 0.0000 7 6 3.0708 4.0185 0.1088 8 6 3.6047 5.2902 0.1082 9 6 4.9727 5.4697 0.0006 10 6 5.8138 4.3766 -0.1075 11 6 5.2932 3.0990 -0.1082 12 6 6.2110 1.9095 -0.2255 13 7 6.3444 1.2627 1.0867 14 6 7.1404 2.0899 2.0026 15 6 7.1365 1.4582 3.3965 16 6 7.7232 0.0463 3.3133 17 6 6.9056 -0.7800 2.3168 18 1 5.8789 -0.8682 2.6723 19 6 7.5121 -2.1531 2.1847 20 1 7.9420 -2.4653 1.2444 21 6 7.5181 -3.0109 3.2640 22 7 6.8770 -2.6863 4.3656 23 14 8.4368 -4.6342 3.1620 24 1 9.7971 -4.4699 3.7346 25 1 7.6987 -5.6698 3.9289 26 1 8.5449 -5.0533 1.7415 27 6 6.9162 -0.0834 0.9542 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.0032 3.8797 0.1932 34 1 2.9541 6.1477 0.1967 35 1 5.3855 6.4677 0.0002 36 1 6.8804 4.5239 -0.1916 37 1 5.7955 1.1990 -0.9401 38 1 7.1913 2.2395 -0.5694 39 1 8.1649 2.1546 1.6360 40 1 6.7100 3.0898 2.0558 41 1 6.1135 1.4057 3.7693 42 1 7.7401 2.0639 4.0723 43 1 7.6825 -0.4235 4.2960 44 1 8.7588 0.1015 2.9776 45 1 6.8809 -3.2899 5.1248 46 1 6.3229 -0.6618 0.2460 47 1 7.9417 -0.0085 0.5926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237887018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:42 Heat of formation + Delta-G solvation = -60.073712 kcal Electronic energy + Delta-G solvation = -27556.532654 eV Core-core repulsion = 23897.007943 eV Total energy + Delta-G solvation = -3659.524712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48737 -38.94454 -37.75850 -36.22236 -33.89851 -32.19103 -32.01454 -30.92991 -30.57228 -29.63600 -26.04801 -24.82783 -24.36289 -22.86916 -22.21566 -21.47515 -21.20295 -20.19875 -18.48762 -17.76707 -16.62990 -16.34414 -16.23012 -15.71817 -15.27018 -14.92296 -14.59500 -14.38456 -13.93082 -13.84759 -13.57052 -13.23196 -13.10542 -12.77401 -12.65520 -12.61399 -12.26069 -12.03727 -11.80376 -11.75917 -11.62154 -11.51330 -11.21039 -11.07132 -10.87503 -10.61273 -10.58188 -10.30126 -10.05974 -9.84594 -9.72314 -9.34243 -9.03442 -8.97300 -8.72876 -8.61685 -8.21361 -7.44738 -5.90835 -3.92738 0.80347 1.29979 2.81042 2.85582 3.35653 3.42532 3.46034 3.78985 4.49523 4.66635 4.76065 4.82828 4.86614 4.99009 4.99870 5.06827 5.25242 5.33619 5.40924 5.41233 5.62628 5.67615 5.75138 5.80685 5.83433 5.87272 5.93236 5.98115 6.07122 6.17027 6.23509 6.33928 6.36451 6.45644 6.54424 6.71488 6.72802 6.79239 6.82628 6.83213 7.12617 7.30717 7.45374 7.82417 7.85565 7.97920 8.13225 8.16981 8.26845 8.60081 9.12333 9.69832 11.18102 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004304 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.885666 B = 6504.670745 C = 8055.654911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.365 6.365 4 C 0.493 3.507 5 O -0.454 6.454 6 C -0.100 4.100 7 C -0.068 4.068 8 C -0.141 4.141 9 C -0.089 4.089 10 C -0.129 4.129 11 C -0.006 4.006 12 C 0.089 3.911 13 N -0.515 5.515 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.105 4.105 17 C 0.056 3.944 18 H 0.039 0.961 19 C -0.511 4.511 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.886 3.114 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.275 1.275 27 C 0.078 3.922 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.258 0.742 46 H 0.065 0.935 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 15.529 -9.449 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.284 6.284 4 C 0.336 3.664 5 O -0.339 6.339 6 C -0.101 4.101 7 C -0.087 4.087 8 C -0.159 4.159 9 C -0.108 4.108 10 C -0.148 4.148 11 C -0.007 4.007 12 C -0.039 4.039 13 N -0.239 5.239 14 C -0.068 4.068 15 C -0.153 4.153 16 C -0.143 4.143 17 C 0.038 3.962 18 H 0.057 0.943 19 C -0.550 4.550 20 H 0.070 0.930 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.714 3.286 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.049 4.049 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -9.551 15.040 -9.070 19.992 hybrid contribution 1.363 -0.887 -0.204 1.639 sum -8.188 14.153 -9.274 18.798 Atomic orbital electron populations 1.21788 0.93043 1.02809 1.03074 1.22972 0.94792 0.80171 1.03058 1.86471 1.24444 1.32306 1.85153 1.21059 0.80502 0.90085 0.74779 1.90971 1.59160 1.41754 1.41967 1.18948 0.93222 0.90324 1.07624 1.21440 1.00057 0.91679 0.95483 1.21076 0.95340 0.96954 1.02518 1.21332 0.93644 0.98818 0.96965 1.21041 1.00139 0.91510 1.02112 1.20060 0.92398 0.95252 0.93012 1.21130 0.95263 0.93417 0.94093 1.61873 1.51322 1.03071 1.07601 1.22087 0.94301 0.95924 0.94507 1.21631 1.01018 0.98378 0.94244 1.21593 0.97507 0.92229 1.03004 1.18632 0.96936 0.92078 0.88593 0.94270 1.21152 1.37991 0.98789 0.97083 0.92950 1.24919 0.95320 0.97754 0.95725 1.69971 1.41539 1.37040 1.04148 0.86684 0.79992 0.83942 0.77987 1.20873 1.21358 1.19969 1.22227 0.94746 0.86586 1.01297 0.90359 0.91611 0.91867 0.91391 0.90700 0.84782 0.85575 0.85715 0.85474 0.88702 0.95154 0.96180 0.92643 0.92236 0.93744 0.90808 0.95085 0.93225 0.91618 0.97084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.26 9.49 -40.53 -0.38 -5.65 16 4 C 0.49 8.13 7.85 34.61 0.27 8.40 16 5 O -0.45 -8.87 11.58 -19.25 -0.22 -9.10 16 6 C -0.10 -1.45 5.87 -104.98 -0.62 -2.07 16 7 C -0.07 -0.80 9.62 -39.17 -0.38 -1.18 16 8 C -0.14 -1.37 10.03 -39.64 -0.40 -1.77 16 9 C -0.09 -0.88 10.04 -39.49 -0.40 -1.27 16 10 C -0.13 -1.53 8.97 -39.64 -0.36 -1.88 16 11 C -0.01 -0.09 4.69 -104.21 -0.49 -0.58 16 12 C 0.09 1.48 4.12 -4.97 -0.02 1.46 16 13 N -0.51 -10.22 3.45 -236.11 -0.82 -11.04 16 14 C 0.06 1.12 5.30 -3.83 -0.02 1.10 16 15 C -0.11 -2.37 6.09 -26.65 -0.16 -2.53 16 16 C -0.11 -2.58 5.08 -26.61 -0.14 -2.71 16 17 C 0.06 1.49 2.13 -91.70 -0.20 1.29 16 18 H 0.04 1.17 8.12 -51.93 -0.42 0.75 16 19 C -0.51 -14.61 8.49 -34.45 -0.29 -14.90 16 20 H 0.05 1.48 7.76 -52.48 -0.41 1.08 16 21 C 0.06 1.83 5.26 -17.82 -0.09 1.74 16 22 N -0.89 -26.33 12.03 55.43 0.67 -25.67 16 23 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.08 1.79 4.39 -3.84 -0.02 1.77 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.13 1.36 7.62 -52.49 -0.40 0.96 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.31 8.00 -52.48 -0.42 0.89 16 37 H 0.09 1.68 6.17 -51.93 -0.32 1.36 16 38 H 0.03 0.47 7.87 -51.93 -0.41 0.06 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.93 6.77 -51.93 -0.35 0.58 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 2.00 6.84 -51.93 -0.36 1.65 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.07 1.57 7.45 -51.93 -0.39 1.18 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -31.71 374.30 -10.50 -42.21 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.68 Total: -0.18 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.68 Total: -13.09 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.15 Total: -36.70 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.61 Total: -14.74 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.71 -10.50 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237887018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.860 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds