Wall clock time and date at job start Tue Mar 31 2020 12:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99954 * 2 1 4 4 C 1.53005 * 109.46931 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46772 * 185.32049 * 4 3 2 6 6 C 1.52995 * 115.55167 * 294.60638 * 5 4 3 7 7 N 1.46501 * 109.47172 * 279.43807 * 6 5 4 8 8 C 1.34781 * 120.00230 * 184.72472 * 7 6 5 9 9 O 1.21282 * 119.99757 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99920 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47362 * 299.99699 * 10 8 7 12 12 C 1.50707 * 109.47284 * 60.00210 * 10 8 7 13 13 H 1.08002 * 119.99852 * 25.28309 * 12 10 8 14 14 C 1.37877 * 119.99752 * 205.29062 * 12 10 8 15 15 N 1.31514 * 120.00022 * 356.73369 * 14 12 10 16 16 Si 1.86807 * 119.99789 * 176.74097 * 14 12 10 17 17 H 1.48500 * 109.46919 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.46813 * 299.99930 * 16 14 12 19 19 H 1.48499 * 109.46820 * 59.99863 * 16 14 12 20 20 C 1.50708 * 109.46999 * 179.97438 * 10 8 7 21 21 C 1.38234 * 120.00002 * 293.19158 * 20 10 8 22 22 C 1.38227 * 120.00260 * 179.80564 * 21 20 10 23 23 C 1.38242 * 119.99658 * 0.40324 * 22 21 20 24 24 C 1.38231 * 120.00040 * 359.85411 * 23 22 21 25 25 C 1.38233 * 119.99874 * 113.46609 * 20 10 8 26 26 C 1.53003 * 117.51716 * 80.31202 * 5 4 3 27 27 C 1.53005 * 60.00058 * 107.47466 * 26 5 4 28 28 H 1.09000 * 109.46900 * 59.99817 * 1 2 3 29 29 H 1.08995 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46881 * 300.00311 * 1 2 3 31 31 H 1.08991 * 109.47235 * 59.99967 * 3 2 1 32 32 H 1.09003 * 109.46834 * 299.99430 * 3 2 1 33 33 H 1.08996 * 109.46885 * 65.32449 * 4 3 2 34 34 H 1.08994 * 109.47203 * 305.32499 * 4 3 2 35 35 H 1.09003 * 109.47352 * 159.44322 * 6 5 4 36 36 H 1.08997 * 109.47293 * 39.44043 * 6 5 4 37 37 H 0.96999 * 119.99904 * 4.72497 * 7 6 5 38 38 H 0.96993 * 120.00042 * 355.02293 * 15 14 12 39 39 H 1.08005 * 120.00047 * 0.02562 * 21 20 10 40 40 H 1.07997 * 120.00813 * 180.22934 * 22 21 20 41 41 H 1.08002 * 119.99815 * 179.83114 * 23 22 21 42 42 H 1.07999 * 120.00071 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00269 * 359.97438 * 25 20 10 44 44 H 1.09000 * 117.49706 * 214.97122 * 26 5 4 45 45 H 1.08997 * 117.49527 * 359.97438 * 26 5 4 46 46 H 1.08994 * 117.50055 * 252.50667 * 27 26 5 47 47 H 1.09002 * 117.49300 * 107.49081 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1572 2.5762 0.1344 6 6 3.9099 3.5252 -1.0400 7 7 4.8477 3.2171 -2.1225 8 6 4.8797 3.9894 -3.2267 9 8 4.1317 4.9391 -3.3242 10 6 5.8439 3.6722 -4.3404 11 1 6.8646 3.7141 -3.9603 12 6 5.5617 2.2901 -4.8709 13 1 4.5747 1.8636 -4.7686 14 6 6.5634 1.5702 -5.4867 15 7 7.7472 2.1136 -5.6686 16 14 6.2392 -0.1770 -6.0627 17 1 7.4680 -0.7278 -6.6886 18 1 5.8553 -1.0180 -4.9007 19 1 5.1364 -0.1736 -7.0572 20 6 5.6789 4.6789 -5.4497 21 6 4.5079 4.7130 -6.1836 22 6 4.3549 5.6389 -7.1984 23 6 5.3762 6.5254 -7.4849 24 6 6.5492 6.4879 -6.7546 25 6 6.7007 5.5644 -5.7371 26 6 4.2255 3.1883 1.5350 27 6 5.5011 2.6829 0.8580 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8641 0.7281 -0.9329 34 1 3.8504 0.5638 0.8393 35 1 4.0580 4.5544 -0.7129 36 1 2.8880 3.4012 -1.3983 37 1 5.4457 2.4574 -2.0447 38 1 7.8949 3.0435 -5.4358 39 1 3.7111 4.0184 -5.9617 40 1 3.4386 5.6681 -7.7693 41 1 5.2577 7.2471 -8.2796 42 1 7.3473 7.1802 -6.9787 43 1 7.6171 5.5352 -5.1664 44 1 4.0941 4.2671 1.6197 45 1 3.8270 2.5998 2.3614 46 1 5.9421 1.7618 1.2391 47 1 6.2090 3.4292 0.4975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361354149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:49 Heat of formation + Delta-G solvation = -52.225527 kcal Electronic energy + Delta-G solvation = -26733.860048 eV Core-core repulsion = 23074.675659 eV Total energy + Delta-G solvation = -3659.184389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.57274 -38.74351 -37.78164 -37.28135 -33.95352 -33.35648 -31.08003 -30.84461 -30.02657 -27.94333 -26.67520 -25.76990 -23.61356 -23.51709 -22.34338 -21.63686 -20.91166 -19.50051 -19.01784 -17.32052 -16.58774 -16.42788 -16.02132 -15.72552 -15.59108 -15.03994 -14.88771 -14.43173 -14.30888 -13.96392 -13.81888 -13.57271 -13.30654 -12.87704 -12.65316 -12.46183 -12.26355 -12.15326 -11.89643 -11.66578 -11.56298 -11.55599 -11.41951 -11.02034 -10.95943 -10.83046 -10.32925 -10.27947 -10.20151 -10.15303 -9.94534 -9.74049 -8.97137 -8.80482 -8.60088 -8.38654 -8.02728 -7.65389 -6.54131 -4.31576 2.28305 2.33215 3.36205 3.37781 3.38882 3.56440 3.62676 3.71270 4.15956 4.41152 4.62189 4.65156 4.76495 4.89157 4.91474 5.09882 5.16398 5.18766 5.25535 5.35351 5.43801 5.51426 5.55390 5.64687 5.65851 5.69957 5.78935 5.83312 5.84918 5.99185 6.06120 6.08775 6.12732 6.17033 6.27071 6.40532 6.46946 6.63510 6.87807 6.97652 7.05562 7.13719 7.28900 7.35611 7.59354 7.83102 7.95674 8.20754 8.31614 8.62427 9.14645 9.40941 10.83790 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.004047 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.607136 B = 6917.392561 C = 7787.868731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.079 4.079 5 C -0.138 4.138 6 C 0.158 3.842 7 N -0.725 5.725 8 C 0.533 3.467 9 O -0.567 6.567 10 C 0.044 3.956 11 H 0.063 0.937 12 C -0.591 4.591 13 H 0.057 0.943 14 C 0.033 3.967 15 N -0.895 5.895 16 Si 1.066 2.934 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.019 4.019 21 C -0.078 4.078 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.167 4.167 27 C -0.162 4.162 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.406 0.594 38 H 0.274 0.726 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 0.202 11.036 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.117 4.117 5 C -0.139 4.139 6 C 0.034 3.966 7 N -0.378 5.378 8 C 0.322 3.678 9 O -0.446 6.446 10 C 0.022 3.978 11 H 0.081 0.919 12 C -0.629 4.629 13 H 0.075 0.925 14 C -0.175 4.175 15 N -0.529 5.529 16 Si 0.893 3.107 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.020 4.020 21 C -0.096 4.096 22 C -0.151 4.151 23 C -0.164 4.164 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.204 4.204 27 C -0.199 4.199 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.241 0.759 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.057 -0.605 10.281 12.484 hybrid contribution -0.726 1.228 0.609 1.551 sum -7.783 0.624 10.890 13.400 Atomic orbital electron populations 1.22717 0.81196 1.02576 0.99931 1.87859 1.19584 1.28320 1.95438 1.22529 0.94067 0.84359 1.00354 1.20980 0.92752 0.94077 1.03881 1.21588 1.02074 0.96671 0.93526 1.20673 0.93845 0.96576 0.85515 1.45880 1.40810 1.33190 1.17882 1.21267 0.83780 0.80312 0.82420 1.90586 1.43605 1.30046 1.80318 1.18156 0.95452 0.95351 0.88808 0.91876 1.21556 1.00006 0.97969 1.43358 0.92462 1.25829 0.92591 1.05366 0.93667 1.70779 1.22713 1.15755 1.43625 0.83577 0.75952 0.74426 0.76729 1.20641 1.21083 1.21276 1.20120 0.92704 0.92557 0.96614 1.20790 0.97494 0.96966 0.94346 1.20985 0.98474 0.96966 0.98679 1.20821 0.94630 1.00296 1.00691 1.20882 0.97353 0.99352 0.97119 1.20969 0.98892 0.96073 0.98676 1.23050 1.02013 1.00993 0.94383 1.23017 0.90548 1.03433 1.02898 0.94002 0.89755 0.94292 0.93375 0.92932 0.89936 0.90886 0.91938 0.92005 0.75872 0.91471 0.87013 0.87429 0.87528 0.87406 0.87332 0.88594 0.88585 0.88396 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.07 10.70 -35.23 -0.38 -5.45 16 3 C 0.06 0.75 5.70 37.16 0.21 0.96 16 4 C -0.08 -0.96 5.47 -26.73 -0.15 -1.10 16 5 C -0.14 -1.63 1.52 -154.51 -0.23 -1.87 16 6 C 0.16 2.38 5.54 -4.04 -0.02 2.36 16 7 N -0.73 -13.13 5.41 -60.30 -0.33 -13.46 16 8 C 0.53 11.80 7.04 -10.99 -0.08 11.72 16 9 O -0.57 -13.80 15.45 5.56 0.09 -13.71 16 10 C 0.04 1.03 1.93 -94.07 -0.18 0.85 16 11 H 0.06 1.55 6.74 -51.93 -0.35 1.20 16 12 C -0.59 -14.95 7.44 -34.44 -0.26 -15.20 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.03 0.85 5.46 -17.82 -0.10 0.75 16 15 N -0.89 -24.82 13.58 55.43 0.75 -24.07 16 16 Si 1.07 23.63 29.91 -169.99 -5.08 18.55 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.02 -0.45 4.08 -104.62 -0.43 -0.87 16 21 C -0.08 -1.79 8.35 -39.59 -0.33 -2.12 16 22 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 23 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 24 C -0.13 -2.52 10.05 -39.58 -0.40 -2.91 16 25 C -0.13 -2.80 9.31 -39.58 -0.37 -3.17 16 26 C -0.17 -1.63 9.90 -26.73 -0.26 -1.90 16 27 C -0.16 -1.74 9.90 -26.73 -0.26 -2.01 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.67 6.97 -51.93 -0.36 0.30 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 37 H 0.41 7.13 8.36 -40.82 -0.34 6.79 16 38 H 0.27 7.53 6.31 -40.82 -0.26 7.27 16 39 H 0.11 2.63 7.87 -52.48 -0.41 2.22 16 40 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.24 7.96 -52.49 -0.42 1.82 16 44 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -30.42 391.29 -9.19 -39.60 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.60 Total: 11.96 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -2.54 Total: -19.32 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.43 Total: -37.53 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.29 Total: -19.16 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.08 Total: 18.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.42 -9.19 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361354149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.621 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds