Wall clock time and date at job start Tue Mar 31 2020 12:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99954 * 2 1 4 4 C 1.53005 * 109.46931 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46772 * 185.32049 * 4 3 2 6 6 C 1.52995 * 115.55167 * 294.60638 * 5 4 3 7 7 N 1.46501 * 109.47172 * 279.43807 * 6 5 4 8 8 C 1.34781 * 120.00230 * 184.72472 * 7 6 5 9 9 O 1.21282 * 119.99757 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99920 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47362 * 299.99699 * 10 8 7 12 12 C 1.50707 * 109.47284 * 60.00210 * 10 8 7 13 13 H 1.08002 * 119.99852 * 25.28309 * 12 10 8 14 14 C 1.37877 * 119.99752 * 205.29062 * 12 10 8 15 15 N 1.31514 * 120.00022 * 356.73369 * 14 12 10 16 16 Si 1.86807 * 119.99789 * 176.74097 * 14 12 10 17 17 H 1.48500 * 109.46919 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.46813 * 299.99930 * 16 14 12 19 19 H 1.48499 * 109.46820 * 59.99863 * 16 14 12 20 20 C 1.50708 * 109.46999 * 179.97438 * 10 8 7 21 21 C 1.38234 * 120.00002 * 293.19158 * 20 10 8 22 22 C 1.38227 * 120.00260 * 179.80564 * 21 20 10 23 23 C 1.38242 * 119.99658 * 0.40324 * 22 21 20 24 24 C 1.38231 * 120.00040 * 359.85411 * 23 22 21 25 25 C 1.38233 * 119.99874 * 113.46609 * 20 10 8 26 26 C 1.53003 * 117.51716 * 80.31202 * 5 4 3 27 27 C 1.53005 * 60.00058 * 107.47466 * 26 5 4 28 28 H 1.09000 * 109.46900 * 59.99817 * 1 2 3 29 29 H 1.08995 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46881 * 300.00311 * 1 2 3 31 31 H 1.08991 * 109.47235 * 59.99967 * 3 2 1 32 32 H 1.09003 * 109.46834 * 299.99430 * 3 2 1 33 33 H 1.08996 * 109.46885 * 65.32449 * 4 3 2 34 34 H 1.08994 * 109.47203 * 305.32499 * 4 3 2 35 35 H 1.09003 * 109.47352 * 159.44322 * 6 5 4 36 36 H 1.08997 * 109.47293 * 39.44043 * 6 5 4 37 37 H 0.96999 * 119.99904 * 4.72497 * 7 6 5 38 38 H 0.96993 * 120.00042 * 355.02293 * 15 14 12 39 39 H 1.08005 * 120.00047 * 0.02562 * 21 20 10 40 40 H 1.07997 * 120.00813 * 180.22934 * 22 21 20 41 41 H 1.08002 * 119.99815 * 179.83114 * 23 22 21 42 42 H 1.07999 * 120.00071 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00269 * 359.97438 * 25 20 10 44 44 H 1.09000 * 117.49706 * 214.97122 * 26 5 4 45 45 H 1.08997 * 117.49527 * 359.97438 * 26 5 4 46 46 H 1.08994 * 117.50055 * 252.50667 * 27 26 5 47 47 H 1.09002 * 117.49300 * 107.49081 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1572 2.5762 0.1344 6 6 3.9099 3.5252 -1.0400 7 7 4.8477 3.2171 -2.1225 8 6 4.8797 3.9894 -3.2267 9 8 4.1317 4.9391 -3.3242 10 6 5.8439 3.6722 -4.3404 11 1 6.8646 3.7141 -3.9603 12 6 5.5617 2.2901 -4.8709 13 1 4.5747 1.8636 -4.7686 14 6 6.5634 1.5702 -5.4867 15 7 7.7472 2.1136 -5.6686 16 14 6.2392 -0.1770 -6.0627 17 1 7.4680 -0.7278 -6.6886 18 1 5.8553 -1.0180 -4.9007 19 1 5.1364 -0.1736 -7.0572 20 6 5.6789 4.6789 -5.4497 21 6 4.5079 4.7130 -6.1836 22 6 4.3549 5.6389 -7.1984 23 6 5.3762 6.5254 -7.4849 24 6 6.5492 6.4879 -6.7546 25 6 6.7007 5.5644 -5.7371 26 6 4.2255 3.1883 1.5350 27 6 5.5011 2.6829 0.8580 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8641 0.7281 -0.9329 34 1 3.8504 0.5638 0.8393 35 1 4.0580 4.5544 -0.7129 36 1 2.8880 3.4012 -1.3983 37 1 5.4457 2.4574 -2.0447 38 1 7.8949 3.0435 -5.4358 39 1 3.7111 4.0184 -5.9617 40 1 3.4386 5.6681 -7.7693 41 1 5.2577 7.2471 -8.2796 42 1 7.3473 7.1802 -6.9787 43 1 7.6171 5.5352 -5.1664 44 1 4.0941 4.2671 1.6197 45 1 3.8270 2.5998 2.3614 46 1 5.9421 1.7618 1.2391 47 1 6.2090 3.4292 0.4975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361354149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:48 Heat of formation + Delta-G solvation = -69.269136 kcal Electronic energy + Delta-G solvation = -26734.599114 eV Core-core repulsion = 23074.675659 eV Total energy + Delta-G solvation = -3659.923455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.11742 -40.00276 -39.19373 -38.35098 -35.86765 -34.88255 -32.66729 -31.99055 -31.65332 -29.53949 -27.70804 -27.07841 -25.50842 -24.44995 -23.31241 -23.22349 -22.49028 -21.18350 -20.17283 -19.13931 -17.84884 -17.52084 -17.50060 -17.08390 -16.80938 -16.47479 -16.05288 -15.76822 -15.65857 -15.58397 -15.42837 -15.00388 -14.51046 -14.35828 -14.13642 -14.06943 -13.85156 -13.51089 -13.24460 -13.04974 -12.85328 -12.60846 -12.56397 -12.38482 -12.31786 -11.99611 -11.97224 -11.93193 -11.80247 -11.24301 -10.98780 -10.87357 -10.64919 -10.62814 -10.48294 -9.95274 -9.66953 -9.35059 -8.61805 -6.38863 0.64006 0.69841 1.55261 1.60865 1.80144 1.83342 2.27905 2.56255 2.71186 2.99530 3.10627 3.21633 3.61890 3.67065 3.94010 4.00718 4.09229 4.20307 4.22603 4.26908 4.29648 4.34968 4.37929 4.45372 4.50185 4.54303 4.62940 4.67230 4.75343 4.77649 4.81200 4.82659 4.89785 4.95856 5.02108 5.11470 5.19158 5.24890 5.25409 5.30941 5.57982 5.67979 5.71519 5.73754 6.04634 6.14182 6.19674 6.30063 6.53714 6.68552 7.38828 7.42720 8.76513 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.004047 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.607136 B = 6917.392561 C = 7787.868731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.065 3.935 4 C -0.073 4.073 5 C -0.148 4.148 6 C 0.159 3.841 7 N -0.712 5.712 8 C 0.530 3.470 9 O -0.592 6.592 10 C 0.043 3.957 11 H 0.047 0.953 12 C -0.586 4.586 13 H 0.045 0.955 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 1.105 2.895 17 H -0.284 1.284 18 H -0.265 1.265 19 H -0.281 1.281 20 C -0.046 4.046 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.163 4.163 28 H 0.039 0.961 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.408 0.592 38 H 0.265 0.735 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 0.481 11.601 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.011 4.011 4 C -0.111 4.111 5 C -0.149 4.149 6 C 0.036 3.964 7 N -0.363 5.363 8 C 0.319 3.681 9 O -0.474 6.474 10 C 0.022 3.978 11 H 0.065 0.935 12 C -0.624 4.624 13 H 0.064 0.936 14 C -0.209 4.209 15 N -0.556 5.556 16 Si 0.927 3.073 17 H -0.210 1.210 18 H -0.190 1.190 19 H -0.207 1.207 20 C -0.047 4.047 21 C -0.126 4.126 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.169 4.169 26 C -0.180 4.180 27 C -0.200 4.200 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.136 0.864 46 H 0.130 0.870 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.723 -0.336 10.887 13.352 hybrid contribution -0.574 1.226 0.441 1.424 sum -8.296 0.890 11.328 14.069 Atomic orbital electron populations 1.22917 0.79641 1.03826 1.00674 1.87821 1.21416 1.28788 1.95577 1.22520 0.93911 0.84223 1.00493 1.20906 0.92987 0.94040 1.03158 1.21394 1.03743 0.96201 0.93532 1.20787 0.92527 0.97443 0.85670 1.45832 1.40750 1.32154 1.17562 1.21057 0.83396 0.80536 0.83140 1.90551 1.44562 1.31271 1.81024 1.18089 0.94857 0.95115 0.89752 0.93519 1.21620 0.99229 0.98783 1.42731 0.93618 1.26950 0.92200 1.08253 0.93498 1.70864 1.23671 1.15524 1.45559 0.83073 0.75750 0.71302 0.77141 1.20974 1.18977 1.20668 1.20170 0.93835 0.93667 0.97010 1.20811 0.97078 0.98397 0.96271 1.21358 1.00154 0.96008 0.97687 1.21317 0.93471 1.00090 1.00940 1.21326 0.98688 0.98711 0.95718 1.21168 0.98614 0.96996 1.00087 1.23156 1.00227 1.01574 0.93010 1.23076 0.90304 1.03932 1.02680 0.94202 0.88354 0.92585 0.91410 0.94539 0.92419 0.89426 0.92230 0.92858 0.75603 0.92411 0.88995 0.84520 0.83204 0.83891 0.87317 0.88049 0.86371 0.87032 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.42 -10.39 10.70 -148.98 -1.59 -11.99 16 3 C 0.06 1.49 5.70 71.98 0.41 1.90 16 4 C -0.07 -1.71 5.47 30.60 0.17 -1.55 16 5 C -0.15 -3.38 1.52 -52.18 -0.08 -3.46 16 6 C 0.16 4.88 5.54 86.38 0.48 5.35 16 7 N -0.71 -26.82 5.41 -463.07 -2.51 -29.32 16 8 C 0.53 24.55 7.04 87.65 0.62 25.17 16 9 O -0.59 -30.01 15.45 -3.04 -0.05 -30.06 16 10 C 0.04 2.15 1.93 -13.03 -0.03 2.12 16 11 H 0.05 2.43 6.74 -2.39 -0.02 2.42 16 12 C -0.59 -30.73 7.44 25.60 0.19 -30.54 16 13 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 14 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 15 N -0.92 -52.41 13.58 21.45 0.29 -52.12 16 16 Si 1.10 48.06 29.91 68.60 2.05 50.12 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 C -0.05 -2.24 4.08 -19.86 -0.08 -2.32 16 21 C -0.11 -5.06 8.35 22.27 0.19 -4.87 16 22 C -0.13 -5.24 10.05 22.27 0.22 -5.02 16 23 C -0.14 -4.91 10.05 22.27 0.22 -4.68 16 24 C -0.13 -4.71 10.05 22.27 0.22 -4.48 16 25 C -0.15 -6.68 9.31 22.27 0.21 -6.47 16 26 C -0.14 -2.43 9.90 30.60 0.30 -2.13 16 27 C -0.16 -3.28 9.90 30.60 0.30 -2.97 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 0.94 6.97 -2.39 -0.02 0.92 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 35 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 36 H 0.05 1.74 6.73 -2.39 -0.02 1.72 16 37 H 0.41 14.94 8.36 -92.71 -0.78 14.16 16 38 H 0.27 15.15 6.31 -92.71 -0.59 14.57 16 39 H 0.09 4.55 7.87 -2.91 -0.02 4.53 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.11 4.65 7.96 -2.91 -0.02 4.63 16 44 H 0.10 1.67 8.08 -2.39 -0.02 1.65 16 45 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.61 391.29 3.61 -63.99 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: 0.36 Total: 41.55 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 5.06 Total: -32.17 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.21 Total: -81.44 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.64 Total: -42.05 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.05 Total: 50.12 kcal Total: -67.61 3.61 -63.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361354149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.275 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds