Wall clock time and date at job start Tue Mar 31 2020 12:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 114.00027 * 2 1 4 4 C 1.53004 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.52097 * 54.91973 * 4 3 2 6 6 C 1.53039 * 109.49658 * 294.84374 * 4 3 2 7 7 C 1.53042 * 109.53650 * 178.68102 * 6 4 3 8 8 C 1.53196 * 109.31263 * 61.36532 * 7 6 4 9 9 N 1.46925 * 108.77392 * 305.36268 * 8 7 6 10 10 C 1.34779 * 120.63279 * 233.63481 * 9 8 7 11 11 O 1.21276 * 120.00190 * 179.97438 * 10 9 8 12 12 C 1.50703 * 119.99820 * 359.97438 * 10 9 8 13 13 H 1.09000 * 109.46953 * 60.00200 * 12 10 9 14 14 C 1.50699 * 109.46825 * 300.00067 * 12 10 9 15 15 H 1.08007 * 119.99876 * 125.77709 * 14 12 10 16 16 C 1.37875 * 120.00307 * 305.77518 * 14 12 10 17 17 N 1.31514 * 120.00138 * 5.09177 * 16 14 12 18 18 Si 1.86804 * 120.00049 * 185.09666 * 16 14 12 19 19 H 1.48500 * 109.47154 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.46798 * 210.00057 * 18 16 14 21 21 H 1.48495 * 109.46954 * 329.99268 * 18 16 14 22 22 C 1.50694 * 109.47008 * 180.02562 * 12 10 9 23 23 C 1.38242 * 119.99860 * 294.80545 * 22 12 10 24 24 C 1.38233 * 119.99429 * 179.76920 * 23 22 12 25 25 C 1.38234 * 120.00597 * 0.50669 * 24 23 22 26 26 C 1.38240 * 119.99611 * 359.74425 * 25 24 23 27 27 C 1.38229 * 119.99903 * 0.02562 * 26 25 24 28 28 C 1.46933 * 118.73787 * 53.60757 * 9 8 7 29 29 H 1.08995 * 109.47058 * 300.00267 * 1 2 3 30 30 H 1.08999 * 109.46640 * 59.99690 * 1 2 3 31 31 H 1.08992 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47439 * 60.00148 * 3 2 1 33 33 H 1.08998 * 109.47295 * 300.00087 * 3 2 1 34 34 H 1.09009 * 109.45656 * 298.69789 * 6 4 3 35 35 H 1.09001 * 109.46820 * 58.65531 * 6 4 3 36 36 H 1.08997 * 109.49879 * 301.41096 * 7 6 4 37 37 H 1.09006 * 109.52522 * 181.32722 * 7 6 4 38 38 H 1.08996 * 109.58179 * 185.57841 * 8 7 6 39 39 H 1.08995 * 109.59053 * 65.15333 * 8 7 6 40 40 H 0.96990 * 120.00267 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.99692 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99620 * 180.23147 * 24 23 22 43 43 H 1.08001 * 119.99993 * 179.72804 * 25 24 23 44 44 H 1.07994 * 119.99586 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00042 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.58612 * 186.60508 * 28 9 8 47 47 H 1.08999 * 109.69788 * 66.25480 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8524 0.5671 -0.8399 6 6 3.9964 0.5403 1.3101 7 6 5.5192 0.3890 1.2979 8 6 6.1651 1.7737 1.1868 9 7 5.6172 2.4578 0.0076 10 6 6.4367 2.9648 -0.9347 11 8 5.9722 3.5268 -1.9037 12 6 7.9305 2.8331 -0.7841 13 1 8.1997 1.7778 -0.7411 14 6 8.3694 3.5157 0.4857 15 1 8.9496 2.9733 1.2176 16 6 8.0303 4.8326 0.7132 17 7 7.2408 5.4633 -0.1286 18 14 8.6925 5.7212 2.2170 19 1 9.9842 6.3713 1.8790 20 1 7.7174 6.7536 2.6511 21 1 8.9021 4.7452 3.3163 22 6 8.6129 3.4786 -1.9625 23 6 8.4488 2.9516 -3.2300 24 6 9.0710 3.5466 -4.3116 25 6 9.8656 4.6621 -4.1244 26 6 10.0338 5.1859 -2.8562 27 6 9.4078 4.5938 -1.7753 28 6 4.1589 2.5782 -0.1252 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.7008 1.1708 2.1487 35 1 3.5347 -0.4416 1.4140 36 1 5.8174 -0.2210 0.4452 37 1 5.8450 -0.0914 2.2205 38 1 7.2442 1.6657 1.0781 39 1 5.9422 2.3538 2.0822 40 1 7.0026 6.3898 0.0313 41 1 7.8319 2.0772 -3.3755 42 1 8.9398 3.1371 -5.3023 43 1 10.3552 5.1242 -4.9689 44 1 10.6549 6.0572 -2.7099 45 1 9.5395 5.0028 -0.7844 46 1 3.9144 3.0012 -1.0995 47 1 3.7705 3.2247 0.6617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465077458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:37 Heat of formation + Delta-G solvation = -57.196161 kcal Electronic energy + Delta-G solvation = -27843.863129 eV Core-core repulsion = 24184.463197 eV Total energy + Delta-G solvation = -3659.399932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.48791 -38.37321 -37.56659 -36.12606 -33.84391 -32.39596 -31.21411 -30.78126 -29.64178 -27.76599 -26.88486 -25.13898 -24.74901 -23.48249 -21.75865 -21.24916 -20.65260 -19.71839 -18.12937 -17.04729 -16.36483 -15.83228 -15.78028 -15.38211 -15.20581 -14.75232 -14.60124 -14.09357 -13.86629 -13.73469 -13.55405 -13.49708 -12.83841 -12.59030 -12.44784 -12.28610 -12.15215 -11.99427 -11.59287 -11.54256 -11.49494 -11.30121 -10.96676 -10.77979 -10.68948 -10.50301 -10.39074 -10.11497 -10.07114 -9.99150 -9.71817 -9.65171 -9.36965 -8.62685 -8.25398 -7.76214 -7.54033 -7.39458 -6.17305 -4.29853 2.50107 2.59998 3.17948 3.27755 3.27952 3.65584 4.11786 4.23060 4.41234 4.89715 5.00453 5.03946 5.07463 5.20775 5.23602 5.28506 5.46244 5.50786 5.56214 5.64921 5.76167 5.81495 5.83483 5.93528 6.01712 6.03649 6.12607 6.20744 6.28516 6.37187 6.40979 6.48230 6.59210 6.62041 6.70018 6.79561 6.82237 6.87804 7.09322 7.12840 7.22433 7.50361 7.61249 7.62834 7.70727 7.79702 8.14515 8.25933 8.58622 8.78414 9.32739 9.75272 10.83700 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.004494 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.477524 B = 6228.349204 C = 7421.836060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.099 4.099 5 H 0.079 0.921 6 C -0.107 4.107 7 C -0.139 4.139 8 C 0.121 3.879 9 N -0.611 5.611 10 C 0.562 3.438 11 O -0.550 6.550 12 C 0.056 3.944 13 H 0.055 0.945 14 C -0.535 4.535 15 H 0.069 0.931 16 C 0.072 3.928 17 N -0.844 5.844 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.017 4.017 23 C -0.114 4.114 24 C -0.143 4.143 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.060 4.060 28 C 0.127 3.873 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.266 0.734 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.137 0.863 46 H 0.085 0.915 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -7.857 1.891 10.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.119 4.119 5 H 0.097 0.903 6 C -0.144 4.144 7 C -0.178 4.178 8 C -0.002 4.002 9 N -0.345 5.345 10 C 0.353 3.647 11 O -0.426 6.426 12 C 0.035 3.965 13 H 0.073 0.927 14 C -0.573 4.573 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.477 5.477 18 Si 0.711 3.289 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.018 4.018 23 C -0.132 4.132 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.167 4.167 27 C -0.077 4.077 28 C 0.003 3.997 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.154 0.846 46 H 0.103 0.897 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.386 -7.498 1.307 9.935 hybrid contribution -0.187 1.065 0.882 1.395 sum -6.573 -6.433 2.189 9.454 Atomic orbital electron populations 1.22703 0.81544 1.02392 0.99835 1.87873 1.19202 1.28372 1.95393 1.22532 0.93946 0.84235 1.00144 1.21540 0.92097 0.98649 0.99587 0.90302 1.21473 0.95954 1.00563 0.96432 1.22048 0.95402 0.98671 1.01657 1.21664 1.00292 0.90120 0.88145 1.47688 1.04155 1.59212 1.23420 1.20889 0.89206 0.74776 0.79826 1.90514 1.77777 1.42226 1.32092 1.17928 0.88579 0.96017 0.93968 0.92715 1.20717 1.36783 0.96718 1.03039 0.91279 1.25018 0.94593 0.97701 0.96171 1.70066 1.31315 1.11447 1.34880 0.86710 0.79030 0.79861 0.83339 1.20259 1.21235 1.19527 1.19852 0.93964 0.94617 0.93382 1.20883 0.99133 1.00195 0.93034 1.20777 1.00027 0.97585 0.97689 1.20793 1.01142 0.97718 0.96543 1.21065 1.01884 1.00242 0.93466 1.21429 0.93480 0.93717 0.99121 1.21126 0.82343 0.93708 1.02544 0.94280 0.94239 0.89911 0.93290 0.93185 0.92409 0.91823 0.92021 0.91509 0.87638 0.92895 0.92364 0.88095 0.88002 0.88117 0.88009 0.84569 0.89701 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.08 10.22 -35.23 -0.36 -5.44 16 3 C 0.07 0.88 5.32 37.16 0.20 1.08 16 4 C -0.10 -1.47 2.58 -90.50 -0.23 -1.70 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 6 C -0.11 -1.46 5.08 -26.69 -0.14 -1.59 16 7 C -0.14 -1.97 6.08 -26.61 -0.16 -2.13 16 8 C 0.12 2.13 5.59 -3.71 -0.02 2.11 16 9 N -0.61 -12.43 2.97 -172.77 -0.51 -12.95 16 10 C 0.56 13.44 5.31 -10.98 -0.06 13.38 16 11 O -0.55 -14.95 14.57 5.56 0.08 -14.87 16 12 C 0.06 1.31 1.89 -94.08 -0.18 1.14 16 13 H 0.05 1.18 7.69 -51.93 -0.40 0.78 16 14 C -0.53 -12.66 5.46 -34.44 -0.19 -12.85 16 15 H 0.07 1.58 7.69 -52.48 -0.40 1.17 16 16 C 0.07 1.77 3.19 -17.82 -0.06 1.71 16 17 N -0.84 -22.52 10.42 55.43 0.58 -21.95 16 18 Si 0.88 19.33 29.54 -169.99 -5.02 14.30 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 22 C -0.02 -0.41 4.50 -104.62 -0.47 -0.88 16 23 C -0.11 -2.54 8.75 -39.58 -0.35 -2.88 16 24 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 25 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 26 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 27 C -0.06 -1.42 8.00 -39.59 -0.32 -1.74 16 28 C 0.13 2.29 5.72 -3.71 -0.02 2.27 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.84 7.79 -51.93 -0.40 0.43 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.95 4.87 -51.93 -0.25 1.70 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 44 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 45 H 0.14 3.40 4.97 -52.49 -0.26 3.14 16 46 H 0.08 1.69 7.00 -51.93 -0.36 1.33 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -29.36 367.77 -9.33 -38.69 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.56 Total: 7.42 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.07 Total: -10.74 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.06 Total: -34.89 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.28 Total: -20.32 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.36 -9.33 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465077458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.511 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds