Wall clock time and date at job start Tue Mar 31 2020 12:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 114.00027 * 2 1 4 4 C 1.53004 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.52097 * 54.91973 * 4 3 2 6 6 C 1.53039 * 109.49658 * 294.84374 * 4 3 2 7 7 C 1.53042 * 109.53650 * 178.68102 * 6 4 3 8 8 C 1.53196 * 109.31263 * 61.36532 * 7 6 4 9 9 N 1.46925 * 108.77392 * 305.36268 * 8 7 6 10 10 C 1.34779 * 120.63279 * 233.63481 * 9 8 7 11 11 O 1.21276 * 120.00190 * 179.97438 * 10 9 8 12 12 C 1.50703 * 119.99820 * 359.97438 * 10 9 8 13 13 H 1.09000 * 109.46953 * 60.00200 * 12 10 9 14 14 C 1.50699 * 109.46825 * 300.00067 * 12 10 9 15 15 H 1.08007 * 119.99876 * 125.77709 * 14 12 10 16 16 C 1.37875 * 120.00307 * 305.77518 * 14 12 10 17 17 N 1.31514 * 120.00138 * 5.09177 * 16 14 12 18 18 Si 1.86804 * 120.00049 * 185.09666 * 16 14 12 19 19 H 1.48500 * 109.47154 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.46798 * 210.00057 * 18 16 14 21 21 H 1.48495 * 109.46954 * 329.99268 * 18 16 14 22 22 C 1.50694 * 109.47008 * 180.02562 * 12 10 9 23 23 C 1.38242 * 119.99860 * 294.80545 * 22 12 10 24 24 C 1.38233 * 119.99429 * 179.76920 * 23 22 12 25 25 C 1.38234 * 120.00597 * 0.50669 * 24 23 22 26 26 C 1.38240 * 119.99611 * 359.74425 * 25 24 23 27 27 C 1.38229 * 119.99903 * 0.02562 * 26 25 24 28 28 C 1.46933 * 118.73787 * 53.60757 * 9 8 7 29 29 H 1.08995 * 109.47058 * 300.00267 * 1 2 3 30 30 H 1.08999 * 109.46640 * 59.99690 * 1 2 3 31 31 H 1.08992 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47439 * 60.00148 * 3 2 1 33 33 H 1.08998 * 109.47295 * 300.00087 * 3 2 1 34 34 H 1.09009 * 109.45656 * 298.69789 * 6 4 3 35 35 H 1.09001 * 109.46820 * 58.65531 * 6 4 3 36 36 H 1.08997 * 109.49879 * 301.41096 * 7 6 4 37 37 H 1.09006 * 109.52522 * 181.32722 * 7 6 4 38 38 H 1.08996 * 109.58179 * 185.57841 * 8 7 6 39 39 H 1.08995 * 109.59053 * 65.15333 * 8 7 6 40 40 H 0.96990 * 120.00267 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.99692 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99620 * 180.23147 * 24 23 22 43 43 H 1.08001 * 119.99993 * 179.72804 * 25 24 23 44 44 H 1.07994 * 119.99586 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00042 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.58612 * 186.60508 * 28 9 8 47 47 H 1.08999 * 109.69788 * 66.25480 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8524 0.5671 -0.8399 6 6 3.9964 0.5403 1.3101 7 6 5.5192 0.3890 1.2979 8 6 6.1651 1.7737 1.1868 9 7 5.6172 2.4578 0.0076 10 6 6.4367 2.9648 -0.9347 11 8 5.9722 3.5268 -1.9037 12 6 7.9305 2.8331 -0.7841 13 1 8.1997 1.7778 -0.7411 14 6 8.3694 3.5157 0.4857 15 1 8.9496 2.9733 1.2176 16 6 8.0303 4.8326 0.7132 17 7 7.2408 5.4633 -0.1286 18 14 8.6925 5.7212 2.2170 19 1 9.9842 6.3713 1.8790 20 1 7.7174 6.7536 2.6511 21 1 8.9021 4.7452 3.3163 22 6 8.6129 3.4786 -1.9625 23 6 8.4488 2.9516 -3.2300 24 6 9.0710 3.5466 -4.3116 25 6 9.8656 4.6621 -4.1244 26 6 10.0338 5.1859 -2.8562 27 6 9.4078 4.5938 -1.7753 28 6 4.1589 2.5782 -0.1252 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.7008 1.1708 2.1487 35 1 3.5347 -0.4416 1.4140 36 1 5.8174 -0.2210 0.4452 37 1 5.8450 -0.0914 2.2205 38 1 7.2442 1.6657 1.0781 39 1 5.9422 2.3538 2.0822 40 1 7.0026 6.3898 0.0313 41 1 7.8319 2.0772 -3.3755 42 1 8.9398 3.1371 -5.3023 43 1 10.3552 5.1242 -4.9689 44 1 10.6549 6.0572 -2.7099 45 1 9.5395 5.0028 -0.7844 46 1 3.9144 3.0012 -1.0995 47 1 3.7705 3.2247 0.6617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465077458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:36 Heat of formation + Delta-G solvation = -72.737659 kcal Electronic energy + Delta-G solvation = -27844.537059 eV Core-core repulsion = 24184.463197 eV Total energy + Delta-G solvation = -3660.073862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09516 -39.79668 -38.88151 -37.59705 -35.66838 -33.84624 -32.74800 -32.35137 -31.32749 -29.32814 -27.97200 -26.51121 -26.12328 -25.12453 -23.05300 -22.92130 -22.22710 -21.11488 -19.76021 -18.81566 -17.45918 -17.34883 -17.10931 -16.82710 -16.75598 -16.20110 -16.07705 -15.58392 -15.40030 -15.25633 -14.93863 -14.84791 -14.24827 -14.16520 -14.07155 -13.79317 -13.71273 -13.35512 -13.09785 -12.99910 -12.82821 -12.71082 -12.51224 -12.40355 -12.18607 -11.94405 -11.80003 -11.66338 -11.46122 -11.39281 -11.27445 -11.15374 -10.59646 -10.52407 -10.12076 -9.44588 -9.17538 -9.10252 -8.07208 -6.22709 0.82243 0.92201 1.42166 1.47009 1.53360 2.33617 2.41622 2.52802 2.98686 3.19481 3.31037 3.73678 3.93812 4.05624 4.27374 4.29849 4.32889 4.34555 4.40484 4.43604 4.48420 4.53410 4.55873 4.62217 4.62927 4.69486 4.80660 4.86217 4.92065 4.96204 4.97922 5.01984 5.14952 5.15614 5.21443 5.25402 5.36315 5.42039 5.52529 5.55724 5.70637 5.85153 5.93562 5.98288 6.07321 6.24322 6.40804 6.51142 6.76056 7.02195 7.41999 7.95038 8.92871 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.004494 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.477524 B = 6228.349204 C = 7421.836060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.074 3.926 4 C -0.089 4.089 5 H 0.063 0.937 6 C -0.100 4.100 7 C -0.129 4.129 8 C 0.118 3.882 9 N -0.613 5.613 10 C 0.558 3.442 11 O -0.593 6.593 12 C 0.050 3.950 13 H 0.063 0.937 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.041 3.959 17 N -0.877 5.877 18 Si 0.935 3.065 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.257 1.257 22 C -0.042 4.042 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.155 4.155 27 C -0.086 4.086 28 C 0.128 3.872 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.256 0.744 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -8.930 2.430 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.003 4.003 4 C -0.109 4.109 5 H 0.081 0.919 6 C -0.138 4.138 7 C -0.168 4.168 8 C -0.005 4.005 9 N -0.345 5.345 10 C 0.350 3.650 11 O -0.473 6.473 12 C 0.029 3.971 13 H 0.081 0.919 14 C -0.563 4.563 15 H 0.093 0.907 16 C -0.163 4.163 17 N -0.512 5.512 18 Si 0.762 3.238 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.181 1.181 22 C -0.042 4.042 23 C -0.149 4.149 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.173 4.173 27 C -0.104 4.104 28 C 0.004 3.996 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.077 0.923 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.497 -8.617 1.893 10.957 hybrid contribution -0.161 1.357 0.672 1.523 sum -6.658 -7.260 2.565 10.179 Atomic orbital electron populations 1.22926 0.79590 1.03846 1.00718 1.87826 1.21314 1.28024 1.95559 1.22394 0.92432 0.84678 1.00787 1.21368 0.93562 0.96011 0.99928 0.91868 1.21441 0.95411 1.01236 0.95667 1.21974 0.95583 0.96230 1.02969 1.21778 1.00005 0.91908 0.86771 1.47777 1.04998 1.58411 1.23357 1.20980 0.89722 0.74432 0.79914 1.90469 1.78464 1.44384 1.33977 1.18005 0.88519 0.96448 0.94123 0.91926 1.20885 1.35778 0.96647 1.03035 0.90657 1.25502 0.94593 0.98240 0.97958 1.70235 1.33296 1.10988 1.36674 0.85892 0.77993 0.78807 0.81158 1.20305 1.22316 1.18132 1.19996 0.94668 0.95348 0.94233 1.21034 0.99843 1.00728 0.93320 1.21188 0.98900 0.97363 0.98530 1.21210 1.00364 0.97152 0.97051 1.21364 1.01669 1.00727 0.93581 1.21392 0.95153 0.94567 0.99258 1.21171 0.81311 0.95948 1.01169 0.93057 0.93695 0.88245 0.91926 0.93333 0.91572 0.90437 0.92369 0.88658 0.88782 0.93021 0.93449 0.88072 0.84720 0.84239 0.85920 0.86472 0.92343 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.89 10.22 -148.98 -1.52 -11.41 16 3 C 0.07 1.83 5.32 71.98 0.38 2.21 16 4 C -0.09 -2.59 2.58 -10.72 -0.03 -2.62 16 5 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.10 -2.53 5.08 30.62 0.16 -2.37 16 7 C -0.13 -3.43 6.08 30.67 0.19 -3.24 16 8 C 0.12 4.10 5.59 86.36 0.48 4.58 16 9 N -0.61 -25.46 2.97 -818.92 -2.43 -27.90 16 10 C 0.56 27.60 5.31 87.66 0.47 28.06 16 11 O -0.59 -33.68 14.57 -3.02 -0.04 -33.73 16 12 C 0.05 2.41 1.89 -13.03 -0.02 2.38 16 13 H 0.06 2.79 7.69 -2.39 -0.02 2.77 16 14 C -0.53 -25.25 5.46 25.60 0.14 -25.11 16 15 H 0.08 3.44 7.69 -2.91 -0.02 3.42 16 16 C 0.04 2.02 3.19 84.65 0.27 2.29 16 17 N -0.88 -48.34 10.42 21.45 0.22 -48.11 16 18 Si 0.94 40.05 29.54 68.60 2.03 42.08 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 C -0.04 -2.03 4.50 -19.87 -0.09 -2.12 16 23 C -0.13 -5.87 8.75 22.27 0.19 -5.67 16 24 C -0.14 -5.51 10.05 22.27 0.22 -5.28 16 25 C -0.14 -5.23 10.05 22.27 0.22 -5.00 16 26 C -0.16 -6.48 10.05 22.27 0.22 -6.26 16 27 C -0.09 -4.15 8.00 22.27 0.18 -3.97 16 28 C 0.13 4.70 5.72 86.36 0.49 5.19 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.81 7.79 -2.39 -0.02 1.79 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.09 3.47 4.87 -2.39 -0.01 3.46 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.26 14.07 8.31 -92.72 -0.77 13.30 16 41 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 44 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 45 H 0.12 6.02 4.97 -2.91 -0.01 6.01 16 46 H 0.06 2.45 7.00 -2.39 -0.02 2.43 16 47 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.03 367.77 3.92 -61.11 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.94 Total: 33.22 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.73 Total: -15.26 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -2.21 Total: -76.01 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.57 Total: -45.14 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -65.03 3.92 -61.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465077458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.629 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds