Wall clock time and date at job start Tue Mar 31 2020 11:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38306 * 119.95920 * 2 1 4 4 C 1.38271 * 120.14869 * 180.02562 * 3 2 1 5 5 C 1.38120 * 120.07437 * 359.97339 * 4 3 2 6 6 C 1.38900 * 119.92627 * 0.02562 * 5 4 3 7 7 N 1.39671 * 120.07447 * 179.97438 * 6 5 4 8 8 C 1.46956 * 111.00165 * 0.02562 * 7 6 5 9 9 C 1.53049 * 109.36630 * 183.18791 * 8 7 6 10 10 N 1.46963 * 109.36171 * 301.59816 * 9 8 7 11 11 C 1.46896 * 111.00029 * 183.18886 * 10 9 8 12 12 C 1.52996 * 109.47255 * 169.99612 * 11 10 9 13 13 C 1.50702 * 109.47159 * 179.97438 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 12 11 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 12 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46646 * 60.00463 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47259 * 300.00225 * 20 18 16 24 24 C 1.46948 * 110.88098 * 59.31807 * 10 9 8 25 25 C 1.46961 * 110.99724 * 123.79800 * 7 6 5 26 26 C 1.38082 * 119.96667 * 180.27457 * 2 1 3 27 27 H 1.08999 * 109.47059 * 90.00676 * 1 2 3 28 28 H 1.08999 * 109.46996 * 210.00249 * 1 2 3 29 29 H 1.08997 * 109.47278 * 330.00264 * 1 2 3 30 30 H 1.08001 * 119.92693 * 0.04026 * 3 2 1 31 31 H 1.08001 * 119.96296 * 179.97438 * 4 3 2 32 32 H 1.08006 * 120.04119 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.49195 * 63.21824 * 8 7 6 34 34 H 1.09000 * 109.50588 * 303.16079 * 8 7 6 35 35 H 1.09001 * 109.49268 * 181.63068 * 9 8 7 36 36 H 1.08997 * 109.51087 * 61.56838 * 9 8 7 37 37 H 1.09004 * 109.47112 * 49.99605 * 11 10 9 38 38 H 1.09000 * 109.47386 * 289.99993 * 11 10 9 39 39 H 1.09004 * 109.47066 * 59.99965 * 12 11 10 40 40 H 1.09000 * 109.47665 * 300.00156 * 12 11 10 41 41 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 42 42 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.48998 * 60.64771 * 24 10 9 44 44 H 1.09010 * 109.49241 * 180.71372 * 24 10 9 45 45 H 1.09000 * 109.48854 * 296.77969 * 25 7 6 46 46 H 1.09001 * 109.48551 * 56.82135 * 25 7 6 47 47 H 1.08002 * 120.03452 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1983 0.0000 4 6 3.5803 1.2028 -0.0005 5 6 4.2764 0.0099 -0.0005 6 6 3.5859 -1.1953 -0.0005 7 7 4.2867 -2.4035 -0.0010 8 6 5.7377 -2.1707 -0.0009 9 6 6.4672 -3.5138 -0.0818 10 7 6.0712 -4.3527 1.0580 11 6 6.8083 -5.6234 1.0575 12 6 6.5607 -6.3571 2.3771 13 6 7.3163 -7.6610 2.3763 14 8 7.9873 -7.9726 1.4151 15 7 7.2514 -8.4781 3.4462 16 6 7.9433 -9.6616 3.4479 17 1 8.5407 -9.9390 2.5920 18 6 7.8760 -10.5042 4.5506 19 7 7.1487 -10.1669 5.5919 20 14 8.8182 -12.1172 4.5525 21 1 10.2695 -11.8428 4.3989 22 1 8.5813 -12.8274 5.8351 23 1 8.3524 -12.9640 3.4250 24 6 4.6203 -4.5854 1.0580 25 6 3.8912 -3.2422 1.1391 26 6 2.1967 -1.1962 -0.0057 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6558 2.1325 0.0007 31 1 4.1166 2.1403 -0.0010 32 1 5.3565 0.0141 -0.0014 33 1 6.0235 -1.6564 0.9166 34 1 6.0081 -1.5578 -0.8608 35 1 7.5437 -3.3453 -0.0527 36 1 6.2028 -4.0162 -1.0122 37 1 7.8743 -5.4250 0.9466 38 1 6.4656 -6.2419 0.2280 39 1 5.4946 -6.5554 2.4881 40 1 6.9034 -5.7386 3.2066 41 1 6.7151 -8.2288 4.2151 42 1 7.1014 -10.7553 6.3616 43 1 4.3345 -5.0998 0.1404 44 1 4.3502 -5.1983 1.9180 45 1 4.1563 -2.7398 2.0694 46 1 2.8146 -3.4103 1.1106 47 1 1.6567 -2.1315 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172729607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:51 Heat of formation + Delta-G solvation = -2.307135 kcal Electronic energy + Delta-G solvation = -25677.035053 eV Core-core repulsion = 22052.308039 eV Total energy + Delta-G solvation = -3624.727014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61936 -38.81565 -38.02667 -35.84930 -33.96189 -32.81827 -31.70890 -31.18952 -30.90579 -29.45373 -27.16712 -26.39822 -24.75271 -24.06077 -22.29450 -21.91936 -21.04847 -19.73435 -19.01229 -17.81969 -17.54833 -16.34160 -16.00741 -15.74470 -15.30374 -15.12046 -14.82669 -14.70057 -14.29532 -14.19520 -14.07825 -13.88609 -13.80001 -13.65335 -13.42725 -12.54850 -12.48837 -12.40806 -12.26081 -11.94709 -11.71180 -11.67960 -11.54156 -11.38839 -11.25402 -11.09549 -10.94123 -10.90006 -10.44604 -10.40318 -10.20413 -9.86708 -9.51114 -8.95021 -8.41679 -8.28795 -8.02575 -7.97356 -6.41824 -3.82867 1.13680 1.18727 3.19773 3.25474 3.29851 3.35101 3.67020 3.82556 3.91825 4.19959 4.52935 4.60401 4.65436 4.86022 4.88334 4.96872 5.04964 5.06411 5.13630 5.18401 5.24834 5.27580 5.30379 5.31562 5.33599 5.49444 5.55147 5.58086 5.60116 5.64731 5.76319 5.79673 5.85719 5.91278 5.99977 6.06677 6.20823 6.31857 6.36781 6.38162 6.48821 6.55766 6.77111 7.05233 7.09690 7.16232 7.54735 8.05381 8.60246 9.16951 9.54512 10.05627 10.75709 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.002017 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.142780 B =13877.069546 C =14417.816864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.090 4.090 5 C -0.178 4.178 6 C 0.121 3.879 7 N -0.492 5.492 8 C 0.055 3.945 9 C 0.056 3.944 10 N -0.543 5.543 11 C 0.079 3.921 12 C -0.126 4.126 13 C 0.440 3.560 14 O -0.600 6.600 15 N -0.561 5.561 16 C -0.302 4.302 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.050 3.950 25 C 0.063 3.937 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.393 0.607 42 H 0.272 0.728 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 22.366 -8.632 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.171 4.171 4 C -0.109 4.109 5 C -0.199 4.199 6 C 0.023 3.977 7 N -0.207 5.207 8 C -0.072 4.072 9 C -0.073 4.073 10 N -0.268 5.268 11 C -0.048 4.048 12 C -0.166 4.166 13 C 0.226 3.774 14 O -0.487 6.487 15 N -0.197 5.197 16 C -0.431 4.431 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.078 4.078 25 C -0.062 4.062 26 C -0.163 4.163 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.227 0.773 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.129 21.940 -9.061 26.217 hybrid contribution 0.136 -0.735 0.422 0.859 sum -10.993 21.205 -8.639 25.399 Atomic orbital electron populations 1.20798 0.91180 1.02782 1.02367 1.19766 0.95914 0.92785 0.97939 1.20926 0.94212 0.97346 1.04625 1.20972 0.94190 0.97554 0.98173 1.21315 1.00206 0.91933 1.06412 1.18974 0.92899 0.88929 0.96879 1.59240 1.06303 1.13593 1.41583 1.22361 0.85499 0.97602 1.01743 1.22154 0.99772 0.92760 0.92567 1.62180 1.04963 1.17383 1.42240 1.21735 0.98736 0.87565 0.96804 1.21435 1.00749 0.95681 0.98778 1.19905 0.86454 0.86426 0.84593 1.90511 1.45980 1.76618 1.35547 1.41898 1.43497 1.18356 1.15906 1.19671 1.25293 0.95201 1.02983 0.88002 1.25274 0.97615 0.99951 0.95101 1.69605 1.39926 1.38564 1.06102 0.85916 0.79801 0.81114 0.77372 1.19887 1.20953 1.19912 1.22264 0.87888 0.95737 1.01954 1.22321 0.99977 0.93258 0.90674 1.20653 0.92243 0.97962 1.05408 0.91115 0.91479 0.91542 0.86402 0.86170 0.85585 0.92614 0.89764 0.89697 0.93840 0.90033 0.93959 0.90697 0.89719 0.77338 0.91792 0.93769 0.89242 0.92818 0.89790 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.06 -0.56 5.88 -104.66 -0.62 -1.17 16 3 C -0.15 -1.29 9.70 -39.54 -0.38 -1.67 16 4 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 5 C -0.18 -1.72 8.82 -39.38 -0.35 -2.07 16 6 C 0.12 1.29 5.63 -83.79 -0.47 0.82 16 7 N -0.49 -5.40 4.76 -170.95 -0.81 -6.21 16 8 C 0.06 0.56 4.29 -3.77 -0.02 0.55 16 9 C 0.06 0.65 5.61 -3.76 -0.02 0.63 16 10 N -0.54 -7.21 4.71 -234.47 -1.10 -8.32 16 11 C 0.08 1.27 4.25 -3.83 -0.02 1.26 16 12 C -0.13 -2.21 5.63 -27.88 -0.16 -2.37 16 13 C 0.44 10.44 7.78 -10.98 -0.09 10.35 16 14 O -0.60 -16.31 15.56 5.55 0.09 -16.22 16 15 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 16 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 20 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.05 0.60 5.41 -3.77 -0.02 0.58 16 25 C 0.06 0.68 5.38 -3.76 -0.02 0.66 16 26 C -0.14 -1.41 8.85 -39.38 -0.35 -1.76 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 1.08 5.81 -52.48 -0.31 0.77 16 33 H 0.06 0.58 7.58 -51.93 -0.39 0.19 16 34 H 0.08 0.76 7.17 -51.93 -0.37 0.38 16 35 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 1.39 7.98 -51.93 -0.41 0.97 16 38 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.07 1.19 6.49 -51.93 -0.34 0.86 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 1.06 6.34 -51.92 -0.33 0.73 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.79 6.83 -51.93 -0.35 0.44 16 47 H 0.12 1.13 7.20 -52.49 -0.38 0.75 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -31.37 374.61 -10.68 -42.05 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.36 Total: 9.13 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.78 Total: -3.86 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -1.25 Total: -52.84 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.37 -10.68 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172729607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.745 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds