Wall clock time and date at job start Tue Mar 31 2020 11:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99666 * 2 1 4 4 H 1.48496 * 109.47447 * 270.00092 * 3 2 1 5 5 H 1.48504 * 109.47140 * 30.00257 * 3 2 1 6 6 H 1.48502 * 109.47336 * 150.00132 * 3 2 1 7 7 C 1.37878 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47105 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99742 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99754 * 5.10270 * 12 11 10 14 14 N 1.34772 * 119.99844 * 185.09572 * 12 11 10 15 15 C 1.47629 * 118.66696 * 4.06449 * 14 12 11 16 16 C 1.53945 * 112.13658 * 222.14770 * 15 14 12 17 17 C 1.50883 * 110.09609 * 40.53703 * 16 15 14 18 18 C 1.52572 * 109.36153 * 268.11970 * 17 16 15 19 19 C 1.47096 * 114.32425 * 85.00807 * 18 17 16 20 20 C 1.44577 * 118.64359 * 184.03021 * 14 12 11 21 21 H 1.08997 * 109.45309 * 209.28672 * 20 14 12 22 22 C 1.50695 * 109.44997 * 329.23836 * 20 14 12 23 23 C 1.38657 * 120.79124 * 115.41415 * 22 20 14 24 24 C 1.38207 * 119.16142 * 179.97438 * 23 22 20 25 25 N 1.31865 * 120.76707 * 0.02562 * 24 23 22 26 26 C 1.31868 * 121.72499 * 359.97438 * 25 24 23 27 27 C 1.38208 * 120.76721 * 359.97438 * 26 25 24 28 28 H 0.96999 * 120.00036 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46909 * 59.99927 * 9 7 2 30 30 H 1.09000 * 109.47077 * 300.00256 * 9 7 2 31 31 H 1.08994 * 109.47178 * 59.99956 * 10 9 7 32 32 H 1.08998 * 109.46633 * 300.00016 * 10 9 7 33 33 H 0.96991 * 120.00344 * 0.02562 * 11 10 9 34 34 H 1.09000 * 108.97233 * 101.44511 * 15 14 12 35 35 H 1.09000 * 108.86123 * 342.76793 * 15 14 12 36 36 H 1.09007 * 109.36335 * 280.35033 * 16 15 14 37 37 H 1.08997 * 109.37211 * 160.73427 * 16 15 14 38 38 H 1.08997 * 109.49029 * 148.15025 * 17 16 15 39 39 H 1.08998 * 109.48928 * 28.07977 * 17 16 15 40 40 H 1.08998 * 108.50920 * 323.75671 * 18 17 16 41 41 H 1.08997 * 108.51520 * 206.26311 * 18 17 16 42 42 H 1.09002 * 109.32455 * 176.93433 * 19 18 17 43 43 H 1.08996 * 109.33009 * 57.46475 * 19 18 17 44 44 H 1.08003 * 120.41716 * 359.97438 * 23 22 20 45 45 H 1.08001 * 119.61674 * 180.29535 * 24 23 22 46 46 H 1.08001 * 119.61692 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.42161 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5130 -4.9307 -0.0012 12 6 2.1869 -6.0979 -0.0027 13 8 3.3993 -6.0999 0.0892 14 7 1.5169 -7.2628 -0.1058 15 6 0.0549 -7.2234 -0.3069 16 6 -0.6767 -8.2736 0.5486 17 6 -0.0577 -8.3455 1.9227 18 6 1.0300 -9.4155 1.9321 19 6 2.3439 -8.9479 1.4644 20 6 2.2598 -8.4998 -0.0156 21 1 1.7553 -9.2695 -0.5997 22 6 3.6507 -8.2905 -0.5563 23 6 4.7582 -8.4048 0.2701 24 6 6.0184 -8.2064 -0.2613 25 7 6.1737 -7.9113 -1.5371 26 6 5.1437 -7.7946 -2.3522 27 6 3.8536 -7.9800 -1.8923 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 2.8728 -3.6047 0.8876 32 1 2.8714 -3.6038 -0.8923 33 1 0.5431 -4.9308 -0.0005 34 1 -0.1632 -7.4092 -1.3585 35 1 -0.3110 -6.2321 -0.0396 36 1 -0.6014 -9.2485 0.0667 37 1 -1.7273 -7.9977 0.6394 38 1 -0.8246 -8.6001 2.6542 39 1 0.3801 -7.3799 2.1753 40 1 0.7095 -10.2403 1.2956 41 1 1.1382 -9.7902 2.9499 42 1 3.0682 -9.7573 1.5557 43 1 2.6671 -8.1072 2.0781 44 1 4.6374 -8.6459 1.3160 45 1 6.8864 -8.2984 0.3747 46 1 5.3101 -7.5512 -3.3912 47 1 3.0141 -7.8834 -2.5648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273303295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:07 Heat of formation + Delta-G solvation = 12.511653 kcal Electronic energy + Delta-G solvation = -27563.251214 eV Core-core repulsion = 23939.166791 eV Total energy + Delta-G solvation = -3624.084423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10105 -39.33606 -37.75159 -35.23895 -34.00862 -33.90308 -32.62536 -31.14901 -30.82518 -29.50748 -26.88200 -25.92435 -24.56902 -23.41347 -22.44141 -21.85349 -20.96506 -20.48112 -19.29157 -18.02585 -16.66272 -16.38116 -16.23486 -15.92762 -15.54942 -15.30619 -14.89332 -14.56656 -14.50881 -14.42734 -13.81302 -13.58378 -13.43051 -13.39096 -13.11620 -12.94622 -12.80949 -12.29343 -12.26437 -11.87737 -11.36845 -11.31274 -11.08611 -11.03928 -10.90171 -10.88664 -10.64117 -10.63314 -10.37960 -10.30655 -9.60799 -9.31110 -9.24904 -8.87890 -8.69867 -8.63106 -8.45794 -8.19014 -6.09840 -4.12300 1.45397 1.51527 2.90687 3.29564 3.35667 3.40469 3.51566 4.01020 4.20926 4.40236 4.42209 4.48064 4.62408 4.67775 4.72767 4.82695 4.88850 5.06874 5.18852 5.24598 5.27482 5.37779 5.40274 5.41060 5.52841 5.59736 5.68007 5.83502 5.86017 5.89221 5.94397 5.99525 6.01139 6.14181 6.20361 6.28638 6.39087 6.51177 6.66630 6.76683 6.98372 6.99359 7.09277 7.54235 7.61788 7.89228 8.23348 8.25913 8.35273 8.91767 8.97625 9.52608 11.01834 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.003768 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.239348 B = 7428.883543 C = 9016.749838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.694 3.306 13 O -0.571 6.571 14 N -0.623 5.623 15 C 0.111 3.889 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.133 4.133 20 C 0.207 3.793 21 H 0.091 0.909 22 C 0.005 3.995 23 C -0.150 4.150 24 C 0.098 3.902 25 N -0.495 5.495 26 C 0.100 3.900 27 C -0.166 4.166 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.391 0.609 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.128 0.872 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -22.864 0.816 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.018 3.982 11 N -0.395 5.395 12 C 0.395 3.605 13 O -0.448 6.448 14 N -0.362 5.362 15 C -0.012 4.012 16 C -0.169 4.169 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.172 4.172 20 C 0.102 3.898 21 H 0.109 0.891 22 C -0.004 4.004 23 C -0.171 4.171 24 C -0.058 4.058 25 N -0.205 5.205 26 C -0.056 4.056 27 C -0.187 4.187 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.145 0.855 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.517 -22.580 0.544 22.592 hybrid contribution -1.123 1.048 0.346 1.575 sum -0.606 -21.532 0.890 21.559 Atomic orbital electron populations 1.69953 1.06087 1.26843 1.50506 1.24982 0.94878 0.99373 0.94975 0.86522 0.79875 0.83007 0.78224 1.20545 1.21164 1.19711 1.21042 0.93244 0.90352 1.51216 0.92284 1.19309 0.94225 0.91154 0.97651 1.21558 0.95590 0.80534 1.00499 1.45821 1.09838 1.05397 1.78465 1.16157 0.85576 0.80588 0.78135 1.90969 1.11517 1.84835 1.57518 1.47031 1.06772 1.04162 1.78216 1.21911 0.79422 1.00336 0.99545 1.21786 0.99768 0.99366 0.96011 1.21074 0.97778 1.00105 0.96611 1.20437 0.95118 0.98354 1.01376 1.21365 0.97773 1.01840 0.96213 1.19633 0.88660 0.85847 0.95673 0.89138 1.19911 0.94440 0.92707 0.93313 1.21782 0.93165 1.02012 1.00095 1.22514 0.96364 0.95292 0.91675 1.67563 1.35133 1.12889 1.04950 1.22475 0.88276 0.95725 0.99147 1.21694 0.98447 1.02609 0.95921 0.92875 0.96109 0.96084 0.92866 0.93007 0.77271 0.91767 0.90167 0.91465 0.90465 0.91848 0.91330 0.92345 0.92280 0.90671 0.90962 0.85462 0.83658 0.83678 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.04 5.62 -4.04 -0.02 3.02 16 11 N -0.74 -12.97 5.43 -65.23 -0.35 -13.32 16 12 C 0.69 11.60 7.78 -86.92 -0.68 10.93 16 13 O -0.57 -11.32 12.36 5.29 0.07 -11.26 16 14 N -0.62 -7.62 2.15 -171.92 -0.37 -7.99 16 15 C 0.11 1.05 6.11 -2.93 -0.02 1.03 16 16 C -0.13 -0.96 5.71 -27.30 -0.16 -1.12 16 17 C -0.12 -0.99 5.51 -28.01 -0.15 -1.14 16 18 C -0.12 -0.91 5.15 -29.78 -0.15 -1.06 16 19 C -0.13 -1.27 3.78 -28.58 -0.11 -1.38 16 20 C 0.21 2.25 2.30 -69.13 -0.16 2.09 16 21 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 22 C 0.01 0.07 3.07 -104.32 -0.32 -0.25 16 23 C -0.15 -2.00 7.99 -39.44 -0.32 -2.32 16 24 C 0.10 1.38 11.18 -17.55 -0.20 1.19 16 25 N -0.50 -7.79 10.36 -13.25 -0.14 -7.93 16 26 C 0.10 1.46 11.18 -17.55 -0.20 1.26 16 27 C -0.17 -2.29 8.87 -39.44 -0.35 -2.64 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 6.04 5.80 -40.82 -0.24 5.80 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.80 5.47 -51.93 -0.28 0.52 16 36 H 0.07 0.43 7.32 -51.92 -0.38 0.05 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 40 H 0.06 0.40 7.36 -51.93 -0.38 0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.62 7.05 -51.93 -0.37 0.26 16 43 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 44 H 0.13 1.46 6.08 -52.48 -0.32 1.14 16 45 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -32.85 366.32 -10.32 -43.17 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.38 Total: 4.12 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.38 Total: -3.43 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.13 Total: -54.62 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.85 -10.32 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273303295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.686 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds