Wall clock time and date at job start Tue Mar 31 2020 11:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99666 * 2 1 4 4 H 1.48496 * 109.47447 * 270.00092 * 3 2 1 5 5 H 1.48504 * 109.47140 * 30.00257 * 3 2 1 6 6 H 1.48502 * 109.47336 * 150.00132 * 3 2 1 7 7 C 1.37878 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47105 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99742 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99754 * 5.10270 * 12 11 10 14 14 N 1.34772 * 119.99844 * 185.09572 * 12 11 10 15 15 C 1.47629 * 118.66696 * 4.06449 * 14 12 11 16 16 C 1.53945 * 112.13658 * 222.14770 * 15 14 12 17 17 C 1.50883 * 110.09609 * 40.53703 * 16 15 14 18 18 C 1.52572 * 109.36153 * 268.11970 * 17 16 15 19 19 C 1.47096 * 114.32425 * 85.00807 * 18 17 16 20 20 C 1.44577 * 118.64359 * 184.03021 * 14 12 11 21 21 H 1.08997 * 109.45309 * 209.28672 * 20 14 12 22 22 C 1.50695 * 109.44997 * 329.23836 * 20 14 12 23 23 C 1.38657 * 120.79124 * 115.41415 * 22 20 14 24 24 C 1.38207 * 119.16142 * 179.97438 * 23 22 20 25 25 N 1.31865 * 120.76707 * 0.02562 * 24 23 22 26 26 C 1.31868 * 121.72499 * 359.97438 * 25 24 23 27 27 C 1.38208 * 120.76721 * 359.97438 * 26 25 24 28 28 H 0.96999 * 120.00036 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46909 * 59.99927 * 9 7 2 30 30 H 1.09000 * 109.47077 * 300.00256 * 9 7 2 31 31 H 1.08994 * 109.47178 * 59.99956 * 10 9 7 32 32 H 1.08998 * 109.46633 * 300.00016 * 10 9 7 33 33 H 0.96991 * 120.00344 * 0.02562 * 11 10 9 34 34 H 1.09000 * 108.97233 * 101.44511 * 15 14 12 35 35 H 1.09000 * 108.86123 * 342.76793 * 15 14 12 36 36 H 1.09007 * 109.36335 * 280.35033 * 16 15 14 37 37 H 1.08997 * 109.37211 * 160.73427 * 16 15 14 38 38 H 1.08997 * 109.49029 * 148.15025 * 17 16 15 39 39 H 1.08998 * 109.48928 * 28.07977 * 17 16 15 40 40 H 1.08998 * 108.50920 * 323.75671 * 18 17 16 41 41 H 1.08997 * 108.51520 * 206.26311 * 18 17 16 42 42 H 1.09002 * 109.32455 * 176.93433 * 19 18 17 43 43 H 1.08996 * 109.33009 * 57.46475 * 19 18 17 44 44 H 1.08003 * 120.41716 * 359.97438 * 23 22 20 45 45 H 1.08001 * 119.61674 * 180.29535 * 24 23 22 46 46 H 1.08001 * 119.61692 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.42161 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5130 -4.9307 -0.0012 12 6 2.1869 -6.0979 -0.0027 13 8 3.3993 -6.0999 0.0892 14 7 1.5169 -7.2628 -0.1058 15 6 0.0549 -7.2234 -0.3069 16 6 -0.6767 -8.2736 0.5486 17 6 -0.0577 -8.3455 1.9227 18 6 1.0300 -9.4155 1.9321 19 6 2.3439 -8.9479 1.4644 20 6 2.2598 -8.4998 -0.0156 21 1 1.7553 -9.2695 -0.5997 22 6 3.6507 -8.2905 -0.5563 23 6 4.7582 -8.4048 0.2701 24 6 6.0184 -8.2064 -0.2613 25 7 6.1737 -7.9113 -1.5371 26 6 5.1437 -7.7946 -2.3522 27 6 3.8536 -7.9800 -1.8923 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 2.8728 -3.6047 0.8876 32 1 2.8714 -3.6038 -0.8923 33 1 0.5431 -4.9308 -0.0005 34 1 -0.1632 -7.4092 -1.3585 35 1 -0.3110 -6.2321 -0.0396 36 1 -0.6014 -9.2485 0.0667 37 1 -1.7273 -7.9977 0.6394 38 1 -0.8246 -8.6001 2.6542 39 1 0.3801 -7.3799 2.1753 40 1 0.7095 -10.2403 1.2956 41 1 1.1382 -9.7902 2.9499 42 1 3.0682 -9.7573 1.5557 43 1 2.6671 -8.1072 2.0781 44 1 4.6374 -8.6459 1.3160 45 1 6.8864 -8.2984 0.3747 46 1 5.3101 -7.5512 -3.3912 47 1 3.0141 -7.8834 -2.5648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273303295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:06 Heat of formation + Delta-G solvation = -6.781650 kcal Electronic energy + Delta-G solvation = -27564.087834 eV Core-core repulsion = 23939.166791 eV Total energy + Delta-G solvation = -3624.921043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17112 -40.45187 -38.79365 -36.72344 -35.33966 -34.92028 -34.32019 -32.15108 -31.78809 -31.30796 -27.92988 -26.89464 -26.27334 -24.44742 -23.48838 -23.14364 -22.48707 -21.24986 -20.51938 -19.12063 -18.48830 -17.60627 -17.35593 -16.99902 -16.65925 -16.52052 -16.31356 -15.91411 -15.86175 -15.31155 -14.97872 -14.88649 -14.62388 -14.36856 -14.31406 -14.19614 -13.90809 -13.59204 -13.31609 -13.12862 -12.93868 -12.76084 -12.53979 -12.24913 -12.22761 -12.05016 -11.74750 -11.61168 -11.54850 -11.45874 -11.31497 -11.29588 -10.61711 -10.33311 -10.11951 -9.87391 -9.81546 -9.41372 -8.25768 -6.35968 0.39561 0.46397 1.40308 1.40570 1.52060 1.77411 2.20267 2.39179 2.88465 3.09024 3.12426 3.54628 3.69373 3.74172 3.77749 4.03545 4.06020 4.15921 4.22160 4.33546 4.38268 4.41881 4.44830 4.49073 4.60820 4.70240 4.77650 4.83809 4.85211 4.93731 4.97655 5.01241 5.14432 5.21101 5.28492 5.28814 5.30822 5.38930 5.45710 5.49985 5.53027 5.56770 5.71238 5.79102 5.92860 5.96111 6.15765 6.76567 7.01613 7.18384 7.33445 7.63991 8.86120 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.003768 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.239348 B = 7428.883543 C = 9016.749838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.027 3.973 10 C 0.166 3.834 11 N -0.738 5.738 12 C 0.692 3.308 13 O -0.606 6.606 14 N -0.610 5.610 15 C 0.103 3.897 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.125 4.125 20 C 0.203 3.797 21 H 0.122 0.878 22 C -0.002 4.002 23 C -0.156 4.156 24 C 0.081 3.919 25 N -0.522 5.522 26 C 0.082 3.918 27 C -0.175 4.175 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.006 0.994 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.401 0.599 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -24.275 0.844 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.011 4.011 10 C 0.042 3.958 11 N -0.396 5.396 12 C 0.393 3.607 13 O -0.485 6.485 14 N -0.347 5.347 15 C -0.018 4.018 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.164 4.164 20 C 0.099 3.901 21 H 0.139 0.861 22 C -0.011 4.011 23 C -0.176 4.176 24 C -0.075 4.075 25 N -0.233 5.233 26 C -0.074 4.074 27 C -0.195 4.195 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.240 0.760 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.160 0.840 45 H 0.181 0.819 46 H 0.177 0.823 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.572 -24.043 0.570 24.056 hybrid contribution -0.822 1.434 0.352 1.690 sum -1.395 -22.609 0.922 22.671 Atomic orbital electron populations 1.70047 1.07448 1.28004 1.50932 1.25821 0.95776 1.02914 0.94329 0.85482 0.78622 0.78612 0.78568 1.19714 1.20291 1.19302 1.21427 0.93421 0.91996 1.51668 0.92685 1.19092 0.94149 0.91679 0.96149 1.20945 0.94443 0.81500 0.98949 1.45535 1.10225 1.04629 1.79164 1.16280 0.85223 0.81303 0.77884 1.90949 1.13099 1.85593 1.58907 1.47023 1.07948 1.03034 1.76682 1.22179 0.77547 1.00885 1.01233 1.21775 0.99969 0.99496 0.94859 1.21084 0.98227 0.98713 0.97659 1.20429 0.93830 0.98644 1.02243 1.21308 0.99345 1.01150 0.94569 1.19924 0.87535 0.85606 0.97015 0.86065 1.20242 0.95702 0.91981 0.93181 1.22023 0.93060 1.01597 1.00888 1.22926 0.97632 0.95316 0.91649 1.67565 1.35977 1.13953 1.05821 1.22828 0.88647 0.96018 0.99942 1.21899 0.98543 1.02488 0.96564 0.92489 0.97376 0.97520 0.94494 0.94442 0.76018 0.89978 0.91173 0.89392 0.88985 0.90696 0.94397 0.90099 0.91631 0.89118 0.93977 0.83970 0.81871 0.82250 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 13.29 21.45 0.28 -53.96 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.37 5.09 29.85 0.15 1.53 16 10 C 0.17 7.40 5.62 86.38 0.49 7.89 16 11 N -0.74 -26.28 5.43 -478.55 -2.60 -28.88 16 12 C 0.69 23.10 7.78 179.05 1.39 24.49 16 13 O -0.61 -24.35 12.36 -3.99 -0.05 -24.40 16 14 N -0.61 -14.04 2.15 -816.09 -1.76 -15.80 16 15 C 0.10 1.72 6.11 86.48 0.53 2.25 16 16 C -0.12 -1.38 5.71 30.23 0.17 -1.21 16 17 C -0.12 -1.71 5.51 29.76 0.16 -1.54 16 18 C -0.11 -1.45 5.15 28.62 0.15 -1.30 16 19 C -0.13 -2.14 3.78 29.39 0.11 -2.03 16 20 C 0.20 3.99 2.30 45.24 0.10 4.09 16 21 H 0.12 1.70 8.06 -2.39 -0.02 1.68 16 22 C 0.00 -0.05 3.07 -19.67 -0.06 -0.11 16 23 C -0.16 -4.08 7.99 22.36 0.18 -3.90 16 24 C 0.08 2.29 11.18 84.68 0.95 3.24 16 25 N -0.52 -16.65 10.36 -195.84 -2.03 -18.68 16 26 C 0.08 2.38 11.18 84.68 0.95 3.33 16 27 C -0.17 -4.71 8.87 22.36 0.20 -4.51 16 28 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.40 12.50 5.80 -92.71 -0.54 11.96 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.32 5.47 -2.39 -0.01 1.31 16 36 H 0.09 0.69 7.32 -2.38 -0.02 0.67 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.04 0.78 7.48 -2.39 -0.02 0.77 16 40 H 0.08 0.72 7.36 -2.39 -0.02 0.70 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 1.27 7.05 -2.39 -0.02 1.26 16 43 H 0.04 0.99 7.98 -2.39 -0.02 0.97 16 44 H 0.14 3.16 6.08 -2.91 -0.02 3.14 16 45 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 46 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 47 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -72.00 366.32 2.46 -69.53 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.42 Total: 23.63 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.16 Total: 2.45 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -6.10 Total: -117.31 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -72.00 2.46 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273303295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.751 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds