Wall clock time and date at job start Tue Mar 31 2020 11:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38291 * 119.92249 * 2 1 4 4 C 1.38107 * 120.07225 * 179.97438 * 3 2 1 5 5 C 1.38908 * 119.92656 * 0.02562 * 4 3 2 6 6 N 1.39675 * 120.07731 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00136 * 179.97438 * 6 5 4 8 8 C 1.53244 * 109.33724 * 187.25657 * 7 6 5 9 9 N 1.47078 * 108.52025 * 306.16569 * 8 7 6 10 10 C 1.34774 * 120.88580 * 231.19079 * 9 8 7 11 11 O 1.21581 * 120.00222 * 184.98784 * 10 9 8 12 12 N 1.34780 * 119.99633 * 4.71390 * 10 9 8 13 13 C 1.46503 * 119.99662 * 175.19700 * 12 10 9 14 14 C 1.53001 * 109.46836 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47148 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99859 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00184 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00116 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99958 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47128 * 89.99877 * 19 17 15 21 21 H 1.48495 * 109.47379 * 210.00050 * 19 17 15 22 22 H 1.48500 * 109.47194 * 330.00089 * 19 17 15 23 23 C 1.47081 * 118.23549 * 51.46114 * 9 8 7 24 24 C 1.46893 * 110.99691 * 304.30065 * 6 5 4 25 25 C 1.38914 * 119.84870 * 0.24263 * 5 4 3 26 26 C 1.38102 * 119.92476 * 359.50404 * 25 5 4 27 27 H 1.09007 * 109.47579 * 89.99683 * 1 2 3 28 28 H 1.09002 * 109.47096 * 209.99595 * 1 2 3 29 29 H 1.09004 * 109.47284 * 329.99989 * 1 2 3 30 30 H 1.07999 * 119.96526 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.03776 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.49497 * 67.29308 * 7 6 5 33 33 H 1.08997 * 109.49286 * 307.20799 * 7 6 5 34 34 H 1.09003 * 109.62633 * 186.46103 * 8 7 6 35 35 H 1.08990 * 109.79289 * 65.97442 * 8 7 6 36 36 H 0.96993 * 120.00011 * 355.19747 * 12 10 9 37 37 H 1.08996 * 109.46867 * 299.99425 * 13 12 10 38 38 H 1.08997 * 109.47602 * 60.00251 * 13 12 10 39 39 H 1.09002 * 109.47346 * 299.99738 * 14 13 12 40 40 H 1.08999 * 109.47423 * 59.99800 * 14 13 12 41 41 H 0.97000 * 119.99809 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.63018 * 68.24833 * 23 9 8 43 43 H 1.09001 * 109.63196 * 188.83157 * 23 9 8 44 44 H 1.08996 * 109.49282 * 292.70003 * 24 6 5 45 45 H 1.09000 * 109.50066 * 52.75776 * 24 6 5 46 46 H 1.08001 * 120.03413 * 179.72563 * 25 5 4 47 47 H 1.07997 * 119.96211 * 180.24944 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6707 0.0001 0.0005 7 6 6.1971 -1.3713 0.0011 8 6 7.7181 -1.3309 0.1838 9 7 8.2887 -0.4462 -0.8434 10 6 9.3072 -0.8588 -1.6236 11 8 9.8266 -0.0853 -2.4047 12 7 9.7537 -2.1273 -1.5339 13 6 10.7886 -2.6063 -2.4536 14 6 11.1119 -4.0686 -2.1405 15 6 12.1759 -4.5616 -3.0870 16 1 12.5807 -3.8984 -3.8371 17 6 12.6326 -5.8593 -2.9953 18 7 13.5616 -6.2894 -3.8209 19 14 11.9320 -7.0066 -1.6984 20 1 10.7558 -7.7228 -2.2543 21 1 12.9678 -7.9924 -1.2977 22 1 11.5151 -6.2168 -0.5119 23 6 7.7221 0.9029 -0.9925 24 6 6.1971 0.7729 -1.1324 25 6 3.5778 -1.2020 -0.0051 26 6 2.1968 -1.1984 -0.0003 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6549 2.1328 0.0004 31 1 4.1160 2.1386 0.0010 32 1 5.9572 -1.8534 -0.9465 33 1 5.7474 -1.9331 0.8197 34 1 8.1273 -2.3348 0.0706 35 1 7.9608 -0.9461 1.1742 36 1 9.3899 -2.7230 -0.8604 37 1 10.4286 -2.5258 -3.4792 38 1 11.6878 -2.0017 -2.3356 39 1 11.4717 -4.1496 -1.1148 40 1 10.2126 -4.6730 -2.2588 41 1 13.8826 -7.2025 -3.7567 42 1 7.9622 1.5002 -0.1128 43 1 8.1339 1.3766 -1.8837 44 1 5.9572 0.2613 -2.0644 45 1 5.7469 1.7656 -1.1361 46 1 4.1161 -2.1383 -0.0096 47 1 1.6550 -2.1326 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273601821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:02 Heat of formation + Delta-G solvation = 12.668431 kcal Electronic energy + Delta-G solvation = -25951.267842 eV Core-core repulsion = 22327.190217 eV Total energy + Delta-G solvation = -3624.077625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88668 -39.73683 -37.88236 -35.18429 -34.90036 -32.88955 -32.01630 -31.85971 -30.85842 -29.99038 -27.99627 -25.62757 -24.90904 -24.40898 -22.30706 -22.11092 -20.96750 -20.73564 -19.42818 -18.39674 -17.18044 -16.91891 -16.17868 -15.89527 -15.77295 -15.33134 -15.18204 -14.53440 -14.42700 -14.27503 -14.10747 -14.03328 -13.87571 -13.79700 -13.70634 -12.96988 -12.69519 -12.56979 -12.44465 -12.21869 -11.99741 -11.81007 -11.62170 -11.48564 -11.42689 -11.21784 -11.07884 -10.40547 -10.27468 -9.97628 -9.97339 -9.76325 -9.33484 -9.24794 -8.85976 -8.62930 -8.35972 -8.04370 -6.11513 -4.11530 1.03710 1.10014 2.70459 3.23961 3.24239 3.31597 3.32928 3.41541 3.57265 4.07298 4.36818 4.40643 4.52569 4.59295 4.62606 4.69080 4.74744 4.89966 4.98274 5.05044 5.09134 5.16215 5.21223 5.24600 5.26537 5.34964 5.37629 5.50797 5.56051 5.63188 5.71844 5.77109 5.93906 6.02324 6.04885 6.23454 6.32469 6.39543 6.44168 6.56840 6.64281 6.78674 6.92914 7.01019 7.22212 7.24012 7.66592 8.17686 8.44473 8.83349 8.93342 9.48448 11.01500 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002427 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.396884 B =11534.823103 C =12584.954166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C -0.096 4.096 4 C -0.137 4.137 5 C 0.109 3.891 6 N -0.487 5.487 7 C 0.036 3.964 8 C 0.116 3.884 9 N -0.639 5.639 10 C 0.705 3.295 11 O -0.591 6.591 12 N -0.742 5.742 13 C 0.147 3.853 14 C -0.021 4.021 15 C -0.522 4.522 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.135 3.865 24 C 0.044 3.956 25 C -0.168 4.168 26 C -0.093 4.093 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.390 0.610 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.016 0.984 41 H 0.265 0.735 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.050 0.950 45 H 0.093 0.907 46 H 0.127 0.873 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.124 13.413 11.813 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.114 4.114 4 C -0.157 4.157 5 C 0.012 3.988 6 N -0.203 5.203 7 C -0.092 4.092 8 C -0.008 4.008 9 N -0.378 5.378 10 C 0.406 3.594 11 O -0.469 6.469 12 N -0.398 5.398 13 C 0.024 3.976 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C 0.011 3.989 24 C -0.082 4.082 25 C -0.188 4.188 26 C -0.112 4.112 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.145 0.855 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.322 14.028 11.549 31.167 hybrid contribution -0.707 -1.487 0.437 1.703 sum -26.030 12.541 11.986 31.281 Atomic orbital electron populations 1.20739 0.91334 1.02558 1.02116 1.19852 0.96042 0.93167 1.02699 1.20890 0.93625 0.97529 0.99384 1.20773 0.93986 0.96765 1.04180 1.18958 0.87984 0.93790 0.98101 1.59019 1.04699 1.14728 1.41820 1.22695 0.95520 0.88671 1.02270 1.21708 0.91805 0.94931 0.92398 1.47337 1.36536 1.15733 1.38184 1.15916 0.79811 0.82872 0.80805 1.90896 1.60015 1.53991 1.41980 1.45693 1.44089 1.10927 1.39072 1.21397 0.88389 0.96361 0.91410 1.19792 0.97300 0.90833 0.97969 1.20909 1.20281 0.97829 1.17001 0.90572 1.25006 0.94638 0.97980 0.95717 1.69903 1.28989 1.17316 1.37411 0.86747 0.78954 0.80795 0.82535 1.20264 1.21266 1.19105 1.21607 0.90385 0.83265 1.03596 1.22793 0.95882 0.98741 0.90786 1.21333 0.94745 0.97373 1.05379 1.20890 0.93679 0.97555 0.99060 0.91462 0.91751 0.91741 0.85987 0.85698 0.92825 0.88745 0.89480 0.90423 0.77457 0.92232 0.91979 0.96033 0.96562 0.92554 0.90974 0.88069 0.93164 0.88918 0.85494 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.12 -0.92 5.88 -104.59 -0.62 -1.53 16 3 C -0.10 -0.75 9.69 -39.61 -0.38 -1.13 16 4 C -0.14 -1.17 9.14 -39.38 -0.36 -1.53 16 5 C 0.11 1.03 5.64 -83.79 -0.47 0.55 16 6 N -0.49 -4.57 4.67 -170.55 -0.80 -5.36 16 7 C 0.04 0.32 4.30 -3.70 -0.02 0.30 16 8 C 0.12 1.13 6.59 -3.60 -0.02 1.10 16 9 N -0.64 -8.24 3.00 -177.91 -0.53 -8.77 16 10 C 0.70 12.12 8.31 -86.92 -0.72 11.40 16 11 O -0.59 -12.48 15.83 5.29 0.08 -12.39 16 12 N -0.74 -12.60 5.47 -65.23 -0.36 -12.96 16 13 C 0.15 3.05 5.62 -4.04 -0.02 3.03 16 14 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 15 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 19 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 23 C 0.14 1.49 6.61 -3.36 -0.02 1.47 16 24 C 0.04 0.41 5.44 -3.47 -0.02 0.40 16 25 C -0.17 -1.50 8.83 -39.38 -0.35 -1.84 16 26 C -0.09 -0.77 9.69 -39.62 -0.38 -1.15 16 27 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.13 0.92 7.15 -52.49 -0.38 0.54 16 32 H 0.05 0.52 7.81 -51.93 -0.41 0.11 16 33 H 0.09 0.69 6.90 -51.93 -0.36 0.33 16 34 H 0.09 0.78 5.64 -51.93 -0.29 0.49 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.39 5.53 5.97 -40.82 -0.24 5.29 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 40 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.25 7.09 -51.93 -0.37 0.88 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.71 6.66 -51.93 -0.35 0.36 16 46 H 0.13 1.00 5.81 -52.49 -0.30 0.70 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -33.57 371.41 -10.75 -44.32 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.27 Total: 2.69 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.57 Total: -2.87 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.91 Total: -53.61 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.57 -10.75 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273601821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.988 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds