Wall clock time and date at job start Tue Mar 31 2020 11:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38306 * 119.96090 * 2 1 4 4 C 1.38264 * 120.15215 * 180.02562 * 3 2 1 5 5 C 1.38127 * 120.06953 * 0.02562 * 4 3 2 6 6 C 1.38887 * 119.92932 * 359.97438 * 5 4 3 7 7 N 1.39672 * 120.07796 * 179.97438 * 6 5 4 8 8 C 1.46904 * 110.99740 * 359.97438 * 7 6 5 9 9 C 1.53244 * 109.33717 * 187.25686 * 8 7 6 10 10 N 1.47078 * 108.52025 * 306.16597 * 9 8 7 11 11 C 1.34774 * 120.88580 * 231.19079 * 10 9 8 12 12 O 1.21581 * 120.00222 * 184.98784 * 11 10 9 13 13 N 1.34780 * 119.99633 * 4.71390 * 11 10 9 14 14 C 1.46503 * 119.99662 * 175.19700 * 13 11 10 15 15 C 1.53001 * 109.46836 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47148 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99859 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00184 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99594 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00143 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47131 * 119.99757 * 20 18 16 23 23 H 1.48503 * 109.47239 * 240.00139 * 20 18 16 24 24 C 1.47081 * 118.23549 * 51.46114 * 10 9 8 25 25 C 1.46897 * 111.00287 * 124.30043 * 7 6 5 26 26 C 1.38081 * 119.96199 * 180.27383 * 2 1 3 27 27 H 1.09001 * 109.46960 * 90.00373 * 1 2 3 28 28 H 1.09003 * 109.46982 * 209.99756 * 1 2 3 29 29 H 1.08997 * 109.47513 * 330.00387 * 1 2 3 30 30 H 1.07999 * 119.92765 * 0.04077 * 3 2 1 31 31 H 1.07995 * 119.96452 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.03281 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.49477 * 67.29353 * 8 7 6 34 34 H 1.09001 * 109.51561 * 307.22379 * 8 7 6 35 35 H 1.09003 * 109.62633 * 186.46131 * 9 8 7 36 36 H 1.08993 * 109.62882 * 65.87882 * 9 8 7 37 37 H 0.96993 * 120.00011 * 355.19747 * 13 11 10 38 38 H 1.08996 * 109.46867 * 299.99425 * 14 13 11 39 39 H 1.08997 * 109.47602 * 60.00251 * 14 13 11 40 40 H 1.09002 * 109.47346 * 299.99738 * 15 14 13 41 41 H 1.08999 * 109.47423 * 59.99800 * 15 14 13 42 42 H 0.97000 * 119.99314 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.63018 * 68.24833 * 24 10 9 44 44 H 1.09001 * 109.63196 * 188.83157 * 24 10 9 45 45 H 1.08993 * 109.49068 * 292.70895 * 25 7 6 46 46 H 1.09000 * 109.49095 * 52.78975 * 25 7 6 47 47 H 1.07993 * 120.04032 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2029 -0.0005 5 6 4.2764 0.0098 -0.0016 6 6 3.5860 -1.1953 -0.0016 7 7 4.2867 -2.4035 -0.0032 8 6 5.7372 -2.1708 -0.0054 9 6 6.4652 -3.5066 -0.1897 10 7 5.9874 -4.4447 0.8373 11 6 6.8562 -5.1193 1.6161 12 8 6.4486 -5.9572 2.3971 13 7 8.1774 -4.8690 1.5250 14 6 9.1121 -5.5245 2.4432 15 6 10.5389 -5.0702 2.1287 16 6 11.5003 -5.7439 3.0736 17 1 11.1306 -6.4274 3.8237 18 6 12.8519 -5.4878 2.9806 19 7 13.3020 -4.6552 2.0674 20 14 14.0437 -6.3235 4.1514 21 1 13.2903 -7.2063 5.0778 22 1 15.0147 -7.1345 3.3738 23 1 14.7733 -5.2934 4.9337 24 6 4.5363 -4.6316 0.9880 25 6 3.8837 -3.2474 1.1296 26 6 2.1966 -1.1963 -0.0057 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6559 2.1325 0.0007 31 1 4.1166 2.1403 -0.0001 32 1 5.3564 0.0141 -0.0024 33 1 6.0350 -1.7220 0.9422 34 1 5.9970 -1.4991 -0.8236 35 1 7.5391 -3.3569 -0.0777 36 1 6.2499 -3.9073 -1.1802 37 1 8.5094 -4.2550 0.8516 38 1 8.8630 -5.2541 3.4693 39 1 9.0402 -6.6056 2.3245 40 1 10.7883 -5.3402 1.1025 41 1 10.6106 -3.9891 2.2477 42 1 14.2529 -4.4753 2.0018 43 1 4.1391 -5.1384 0.1085 44 1 4.3342 -5.2261 1.8790 45 1 4.2069 -2.7838 2.0615 46 1 2.7992 -3.3565 1.1340 47 1 1.6567 -2.1315 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273642234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:07 Heat of formation + Delta-G solvation = 8.180123 kcal Electronic energy + Delta-G solvation = -25936.719768 eV Core-core repulsion = 22312.447516 eV Total energy + Delta-G solvation = -3624.272252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83081 -39.66419 -37.78586 -35.03320 -34.76345 -33.01970 -32.68827 -31.40630 -30.49300 -29.31295 -27.32934 -26.74622 -24.76601 -24.06884 -22.47302 -21.86156 -21.05617 -20.65169 -19.32905 -18.17653 -17.20495 -16.48903 -16.11226 -15.85701 -15.70734 -15.43895 -15.16811 -14.59902 -14.49397 -14.22140 -14.07146 -14.04443 -13.76889 -13.55889 -13.47891 -12.80584 -12.58671 -12.38379 -12.29376 -12.17364 -11.96911 -11.73473 -11.56030 -11.40351 -11.16447 -11.06409 -11.05080 -10.61999 -10.34680 -10.03713 -9.91572 -9.56004 -9.25646 -8.99007 -8.79107 -8.47949 -8.24071 -8.07602 -6.10158 -4.12555 1.09307 1.14297 2.78547 3.28082 3.29190 3.35754 3.41204 3.48984 3.62404 4.16253 4.42475 4.46777 4.55626 4.60236 4.70218 4.83415 4.86212 4.97634 5.02314 5.06749 5.11608 5.23471 5.25683 5.27139 5.27174 5.40137 5.47851 5.53248 5.60788 5.64988 5.78251 5.82949 5.98811 6.16938 6.23215 6.33533 6.38724 6.47905 6.50730 6.68992 6.75970 6.97207 7.00451 7.15007 7.54481 7.61772 7.89091 8.22776 8.34324 8.90305 8.95713 9.52253 11.01559 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.002223 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.077741 B =12595.385221 C =13331.491417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.150 4.150 4 C -0.089 4.089 5 C -0.177 4.177 6 C 0.119 3.881 7 N -0.488 5.488 8 C 0.036 3.964 9 C 0.116 3.884 10 N -0.639 5.639 11 C 0.704 3.296 12 O -0.595 6.595 13 N -0.738 5.738 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.135 3.865 25 C 0.045 3.955 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.034 11.849 -7.841 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.169 4.169 4 C -0.108 4.108 5 C -0.198 4.198 6 C 0.021 3.979 7 N -0.203 5.203 8 C -0.092 4.092 9 C -0.008 4.008 10 N -0.378 5.378 11 C 0.405 3.595 12 O -0.473 6.473 13 N -0.394 5.394 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 C 0.011 3.989 25 C -0.081 4.081 26 C -0.162 4.162 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.196 10.942 -7.694 27.648 hybrid contribution 1.210 0.448 0.704 1.470 sum -22.986 11.390 -6.989 26.589 Atomic orbital electron populations 1.20799 0.91150 1.02776 1.02388 1.19769 0.95928 0.92783 0.97954 1.20944 0.94220 0.97396 1.04376 1.20995 0.94199 0.97637 0.97947 1.21339 1.00281 0.91943 1.06227 1.18956 0.92905 0.88817 0.97233 1.59010 1.05915 1.13562 1.41792 1.22708 0.86115 0.98003 1.02337 1.21719 0.98565 0.88235 0.92329 1.47336 1.06022 1.46161 1.38291 1.15953 0.81546 0.81225 0.80773 1.90877 1.77986 1.36319 1.42153 1.45704 1.04732 1.49885 1.39069 1.21611 0.89319 0.96319 0.91130 1.19327 0.88156 0.97181 0.97797 1.21087 0.91398 1.26542 1.16796 0.92147 1.25004 0.98472 0.95194 0.95705 1.69968 1.14251 1.35261 1.33850 0.86450 0.80877 0.79362 0.80843 1.19564 1.20935 1.20964 1.21592 0.78591 0.95159 1.03512 1.22783 1.00971 0.93614 0.90779 1.20634 0.92147 0.97967 1.05462 0.91078 0.91505 0.91531 0.86341 0.86047 0.85492 0.92796 0.88687 0.89263 0.90457 0.77260 0.92863 0.92631 0.95958 0.96044 0.92923 0.91032 0.88138 0.93166 0.88988 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.06 -0.53 5.88 -104.65 -0.62 -1.14 16 3 C -0.15 -1.23 9.70 -39.55 -0.38 -1.62 16 4 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 5 C -0.18 -1.67 8.83 -39.38 -0.35 -2.02 16 6 C 0.12 1.18 5.64 -83.79 -0.47 0.71 16 7 N -0.49 -4.85 4.67 -170.54 -0.80 -5.65 16 8 C 0.04 0.34 4.30 -3.70 -0.02 0.33 16 9 C 0.12 1.22 6.59 -3.60 -0.02 1.20 16 10 N -0.64 -8.69 3.00 -177.91 -0.53 -9.22 16 11 C 0.70 12.64 8.31 -86.92 -0.72 11.92 16 12 O -0.59 -12.90 15.83 5.29 0.08 -12.81 16 13 N -0.74 -13.33 5.47 -65.23 -0.36 -13.69 16 14 C 0.14 3.01 5.62 -4.04 -0.02 2.99 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 20 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.14 1.57 6.61 -3.37 -0.02 1.54 16 25 C 0.04 0.44 5.45 -3.47 -0.02 0.42 16 26 C -0.14 -1.29 8.80 -39.38 -0.35 -1.64 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.13 1.08 5.81 -52.49 -0.30 0.77 16 33 H 0.05 0.56 7.82 -51.93 -0.41 0.15 16 34 H 0.09 0.76 6.89 -51.93 -0.36 0.41 16 35 H 0.09 0.90 5.64 -51.93 -0.29 0.61 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.39 6.13 5.97 -40.82 -0.24 5.89 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.29 7.09 -51.93 -0.37 0.92 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.75 6.67 -51.93 -0.35 0.40 16 47 H 0.12 0.99 7.16 -52.49 -0.38 0.62 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -32.85 375.04 -11.12 -43.97 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.30 Total: 2.48 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.58 Total: -1.81 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.95 Total: -53.87 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.85 -11.12 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273642234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.150 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds