Wall clock time and date at job start Tue Mar 31 2020 11:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38306 * 119.96090 * 2 1 4 4 C 1.38264 * 120.15215 * 180.02562 * 3 2 1 5 5 C 1.38127 * 120.06953 * 0.02562 * 4 3 2 6 6 C 1.38887 * 119.92932 * 359.97438 * 5 4 3 7 7 N 1.39672 * 120.07796 * 179.97438 * 6 5 4 8 8 C 1.46904 * 110.99740 * 359.97438 * 7 6 5 9 9 C 1.53244 * 109.33717 * 187.25686 * 8 7 6 10 10 N 1.47078 * 108.52025 * 306.16597 * 9 8 7 11 11 C 1.34774 * 120.88580 * 231.19079 * 10 9 8 12 12 O 1.21581 * 120.00222 * 184.98784 * 11 10 9 13 13 N 1.34780 * 119.99633 * 4.71390 * 11 10 9 14 14 C 1.46503 * 119.99662 * 175.19700 * 13 11 10 15 15 C 1.53001 * 109.46836 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47148 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99859 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00184 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99594 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00143 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47131 * 119.99757 * 20 18 16 23 23 H 1.48503 * 109.47239 * 240.00139 * 20 18 16 24 24 C 1.47081 * 118.23549 * 51.46114 * 10 9 8 25 25 C 1.46897 * 111.00287 * 124.30043 * 7 6 5 26 26 C 1.38081 * 119.96199 * 180.27383 * 2 1 3 27 27 H 1.09001 * 109.46960 * 90.00373 * 1 2 3 28 28 H 1.09003 * 109.46982 * 209.99756 * 1 2 3 29 29 H 1.08997 * 109.47513 * 330.00387 * 1 2 3 30 30 H 1.07999 * 119.92765 * 0.04077 * 3 2 1 31 31 H 1.07995 * 119.96452 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.03281 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.49477 * 67.29353 * 8 7 6 34 34 H 1.09001 * 109.51561 * 307.22379 * 8 7 6 35 35 H 1.09003 * 109.62633 * 186.46131 * 9 8 7 36 36 H 1.08993 * 109.62882 * 65.87882 * 9 8 7 37 37 H 0.96993 * 120.00011 * 355.19747 * 13 11 10 38 38 H 1.08996 * 109.46867 * 299.99425 * 14 13 11 39 39 H 1.08997 * 109.47602 * 60.00251 * 14 13 11 40 40 H 1.09002 * 109.47346 * 299.99738 * 15 14 13 41 41 H 1.08999 * 109.47423 * 59.99800 * 15 14 13 42 42 H 0.97000 * 119.99314 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.63018 * 68.24833 * 24 10 9 44 44 H 1.09001 * 109.63196 * 188.83157 * 24 10 9 45 45 H 1.08993 * 109.49068 * 292.70895 * 25 7 6 46 46 H 1.09000 * 109.49095 * 52.78975 * 25 7 6 47 47 H 1.07993 * 120.04032 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2029 -0.0005 5 6 4.2764 0.0098 -0.0016 6 6 3.5860 -1.1953 -0.0016 7 7 4.2867 -2.4035 -0.0032 8 6 5.7372 -2.1708 -0.0054 9 6 6.4652 -3.5066 -0.1897 10 7 5.9874 -4.4447 0.8373 11 6 6.8562 -5.1193 1.6161 12 8 6.4486 -5.9572 2.3971 13 7 8.1774 -4.8690 1.5250 14 6 9.1121 -5.5245 2.4432 15 6 10.5389 -5.0702 2.1287 16 6 11.5003 -5.7439 3.0736 17 1 11.1306 -6.4274 3.8237 18 6 12.8519 -5.4878 2.9806 19 7 13.3020 -4.6552 2.0674 20 14 14.0437 -6.3235 4.1514 21 1 13.2903 -7.2063 5.0778 22 1 15.0147 -7.1345 3.3738 23 1 14.7733 -5.2934 4.9337 24 6 4.5363 -4.6316 0.9880 25 6 3.8837 -3.2474 1.1296 26 6 2.1966 -1.1963 -0.0057 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6559 2.1325 0.0007 31 1 4.1166 2.1403 -0.0001 32 1 5.3564 0.0141 -0.0024 33 1 6.0350 -1.7220 0.9422 34 1 5.9970 -1.4991 -0.8236 35 1 7.5391 -3.3569 -0.0777 36 1 6.2499 -3.9073 -1.1802 37 1 8.5094 -4.2550 0.8516 38 1 8.8630 -5.2541 3.4693 39 1 9.0402 -6.6056 2.3245 40 1 10.7883 -5.3402 1.1025 41 1 10.6106 -3.9891 2.2477 42 1 14.2529 -4.4753 2.0018 43 1 4.1391 -5.1384 0.1085 44 1 4.3342 -5.2261 1.8790 45 1 4.2069 -2.7838 2.0615 46 1 2.7992 -3.3565 1.1340 47 1 1.6567 -2.1315 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273642234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:06 Heat of formation + Delta-G solvation = -11.689355 kcal Electronic energy + Delta-G solvation = -25937.581373 eV Core-core repulsion = 22312.447516 eV Total energy + Delta-G solvation = -3625.133857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77910 -40.74605 -38.70402 -36.68320 -35.87959 -34.84212 -33.47955 -32.33704 -31.66910 -30.72245 -28.02210 -27.69131 -26.49891 -24.99602 -23.50583 -22.96168 -22.44020 -21.58378 -20.54049 -19.28069 -18.52598 -17.99101 -17.27376 -16.89547 -16.70952 -16.51615 -16.40696 -15.98441 -15.58739 -15.38346 -15.10261 -15.07799 -14.76482 -14.52975 -14.29776 -14.19392 -14.05769 -13.39001 -13.12844 -13.01837 -12.95140 -12.85288 -12.72088 -12.53135 -12.48987 -12.39435 -12.25959 -12.11462 -11.76100 -11.67570 -11.46184 -11.17479 -10.78043 -10.61302 -10.20314 -9.61916 -9.55854 -8.81201 -8.24528 -6.34475 0.43588 0.48969 1.40927 1.41731 1.53778 1.58838 2.06571 2.40187 2.56854 2.90907 2.93413 3.10337 3.68405 3.81168 3.84099 4.01481 4.10699 4.11820 4.23064 4.24145 4.39873 4.46294 4.49281 4.50134 4.50749 4.56532 4.65517 4.69407 4.75922 4.84988 4.86695 4.93190 4.94755 5.04638 5.21128 5.28380 5.33822 5.41773 5.50523 5.54134 5.58133 5.70613 5.76837 5.81687 5.91303 5.95237 6.16588 6.33114 6.78457 6.92490 7.34687 7.49971 8.87551 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.002223 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.077741 B =12595.385221 C =13331.491417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.156 4.156 4 C -0.098 4.098 5 C -0.191 4.191 6 C 0.101 3.899 7 N -0.488 5.488 8 C 0.041 3.959 9 C 0.113 3.887 10 N -0.631 5.631 11 C 0.701 3.299 12 O -0.636 6.636 13 N -0.734 5.734 14 C 0.160 3.840 15 C 0.025 3.975 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.134 3.866 25 C 0.054 3.946 26 C -0.151 4.151 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.034 0.966 46 H 0.112 0.888 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.028 12.688 -8.339 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.175 4.175 4 C -0.116 4.116 5 C -0.211 4.211 6 C 0.004 3.996 7 N -0.203 5.203 8 C -0.087 4.087 9 C -0.010 4.010 10 N -0.369 5.369 11 C 0.403 3.597 12 O -0.518 6.518 13 N -0.391 5.391 14 C 0.036 3.964 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.202 1.202 24 C 0.011 3.989 25 C -0.072 4.072 26 C -0.172 4.172 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.062 0.938 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.242 0.758 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.053 0.947 46 H 0.130 0.870 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.226 11.827 -8.238 29.054 hybrid contribution 1.432 0.272 0.799 1.662 sum -23.795 12.099 -7.438 27.711 Atomic orbital electron populations 1.20840 0.89438 1.03583 1.03109 1.20108 0.97312 0.92549 0.97160 1.21259 0.94321 0.98272 1.03662 1.21267 0.94680 0.98063 0.97592 1.21504 1.00711 0.92257 1.06676 1.19093 0.93404 0.88805 0.98283 1.59048 1.05905 1.13859 1.41508 1.22676 0.86054 0.97376 1.02550 1.21942 0.98937 0.88175 0.91961 1.47390 1.06346 1.45463 1.37698 1.16053 0.81588 0.81188 0.80902 1.90844 1.78607 1.38258 1.44054 1.45400 1.04669 1.50042 1.38945 1.21096 0.88393 0.95663 0.91295 1.19122 0.89594 0.96075 0.96482 1.21480 0.92497 1.26957 1.17424 0.92331 1.25868 1.00251 0.95757 0.97332 1.70063 1.14915 1.36291 1.35226 0.85390 0.78453 0.78436 0.78724 1.19028 1.20206 1.20215 1.21732 0.77351 0.96293 1.03538 1.22686 1.01896 0.92366 0.90256 1.20828 0.91989 0.98785 1.05559 0.90298 0.90952 0.90533 0.84522 0.84461 0.85083 0.93837 0.86874 0.88944 0.88887 0.75799 0.93864 0.93814 0.97273 0.97272 0.92540 0.89433 0.89667 0.94744 0.86973 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.07 -1.04 5.88 -19.88 -0.12 -1.16 16 3 C -0.16 -2.27 9.70 22.29 0.22 -2.05 16 4 C -0.10 -1.52 10.04 22.25 0.22 -1.29 16 5 C -0.19 -3.38 8.83 22.40 0.20 -3.18 16 6 C 0.10 1.89 5.64 38.22 0.22 2.10 16 7 N -0.49 -9.04 4.67 -693.48 -3.24 -12.28 16 8 C 0.04 0.73 4.30 86.38 0.37 1.11 16 9 C 0.11 2.24 6.59 86.35 0.57 2.81 16 10 N -0.63 -16.85 3.00 -835.06 -2.51 -19.36 16 11 C 0.70 25.38 8.31 179.05 1.49 26.87 16 12 O -0.64 -28.11 15.83 -3.97 -0.06 -28.18 16 13 N -0.73 -26.74 5.47 -478.54 -2.62 -29.35 16 14 C 0.16 7.07 5.62 86.38 0.49 7.56 16 15 C 0.02 1.26 5.09 29.85 0.15 1.41 16 16 C -0.55 -30.61 9.11 25.60 0.23 -30.38 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -54.06 13.29 21.45 0.28 -53.77 16 20 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.13 3.01 6.61 86.50 0.57 3.58 16 25 C 0.05 1.02 5.45 86.53 0.47 1.49 16 26 C -0.15 -2.53 8.80 22.40 0.20 -2.33 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.13 2.09 5.81 -2.91 -0.02 2.07 16 33 H 0.04 0.88 7.82 -2.39 -0.02 0.86 16 34 H 0.11 1.63 6.89 -2.39 -0.02 1.61 16 35 H 0.09 1.78 5.64 -2.39 -0.01 1.76 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.40 12.60 5.97 -92.71 -0.55 12.05 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.21 7.09 -2.39 -0.02 2.19 16 45 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 1.65 6.67 -2.39 -0.02 1.64 16 47 H 0.13 1.88 7.16 -2.91 -0.02 1.86 16 Total: -1.00 -70.19 375.04 0.75 -69.44 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.41 Total: 20.70 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 6.45 Total: 7.03 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -8.08 Total: -114.76 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.06 Total: -28.18 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.19 0.75 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273642234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.749 kcal (2) G-P(sol) polarization free energy of solvation -70.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds