Wall clock time and date at job start Tue Mar 31 2020 11:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 C 1.53783 * 113.61264 * 279.14017 * 18 17 15 20 20 C 1.53958 * 87.01810 * 220.04314 * 19 18 17 21 21 C 1.53777 * 87.11051 * 25.36343 * 20 19 18 22 22 C 1.52997 * 109.47174 * 300.00546 * 17 15 14 23 23 C 1.53783 * 113.61569 * 159.13154 * 22 17 15 24 24 C 1.53957 * 87.01905 * 220.04665 * 23 22 17 25 25 C 1.53777 * 87.11091 * 25.36484 * 24 23 22 26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 32 32 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 33 33 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 34 34 H 1.08997 * 112.85027 * 50.33095 * 18 17 15 35 35 H 1.09002 * 113.61423 * 334.56442 * 19 18 17 36 36 H 1.09005 * 113.61585 * 105.46857 * 19 18 17 37 37 H 1.08997 * 113.53875 * 270.80910 * 20 19 18 38 38 H 1.09005 * 113.74153 * 139.93919 * 20 19 18 39 39 H 1.08999 * 113.61596 * 220.08620 * 21 20 19 40 40 H 1.09006 * 113.61573 * 89.18718 * 21 20 19 41 41 H 1.08998 * 112.84835 * 290.32829 * 22 17 15 42 42 H 1.08997 * 113.61366 * 334.56601 * 23 22 17 43 43 H 1.08999 * 113.61335 * 105.46860 * 23 22 17 44 44 H 1.09004 * 113.53803 * 270.80955 * 24 23 22 45 45 H 1.08998 * 113.74369 * 139.94761 * 24 23 22 46 46 H 1.09008 * 113.61338 * 220.09252 * 25 24 23 47 47 H 1.09001 * 113.61808 * 89.18781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 6 5.0784 -9.9334 -0.4225 20 6 5.7061 -11.2658 0.0259 21 6 5.7084 -10.6947 1.4537 22 6 5.3453 -8.0920 2.9620 23 6 4.8568 -9.1899 3.9217 24 6 4.6507 -8.0754 4.9636 25 6 4.4963 -7.1051 3.7807 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2837 -2.6015 -1.7660 31 1 5.6844 -5.1081 -1.1009 32 1 3.6742 -5.9850 2.0407 33 1 3.8259 -8.6269 1.5316 34 1 6.7500 -8.9285 0.6222 35 1 3.9891 -9.9288 -0.3831 36 1 5.4703 -9.5619 -1.3694 37 1 6.7041 -11.4347 -0.3784 38 1 5.0475 -12.1254 -0.0994 39 1 6.6080 -10.9368 2.0194 40 1 4.7916 -10.8986 2.0070 41 1 6.4168 -7.9025 3.0246 42 1 3.9298 -9.6670 3.6036 43 1 5.6309 -9.9069 4.1951 44 1 5.5325 -7.8822 5.5746 45 1 3.7427 -8.1903 5.5555 46 1 4.9799 -6.1413 3.9404 47 1 3.4706 -7.0111 3.4239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285475012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:03 Heat of formation + Delta-G solvation = 83.360116 kcal Electronic energy + Delta-G solvation = -26637.028340 eV Core-core repulsion = 23016.016137 eV Total energy + Delta-G solvation = -3621.012203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10713 -40.23892 -38.37924 -38.08369 -34.70393 -33.27808 -31.66568 -30.79620 -29.36464 -27.22456 -26.31266 -25.59447 -24.76705 -23.78301 -22.45419 -21.23697 -20.44902 -19.77264 -19.44285 -19.10867 -17.12953 -17.03138 -16.51514 -15.94271 -15.71945 -15.45402 -15.20898 -14.60466 -14.53808 -14.30868 -13.82264 -13.48752 -13.06602 -12.84298 -12.71050 -12.56385 -12.50191 -12.38389 -12.25653 -12.09984 -11.95526 -11.62141 -11.31495 -11.12187 -10.89003 -10.76744 -10.65141 -10.58617 -10.48349 -10.42156 -10.03737 -9.98181 -9.92881 -9.53144 -9.40096 -8.76778 -8.16193 -7.49974 -6.23574 -4.25816 2.35337 2.78765 2.89115 3.16146 3.21151 3.24218 3.70695 3.78674 4.15859 4.22713 4.28966 4.34973 4.50617 4.54754 4.62452 4.69568 4.77315 4.98610 5.04538 5.05623 5.24411 5.28494 5.42803 5.46784 5.49814 5.54475 5.58325 5.59595 5.69420 5.72510 5.73933 5.75872 5.77658 5.96176 5.96957 6.11731 6.20252 6.24957 6.37412 6.41155 6.46498 6.59691 6.66250 7.25691 7.41038 7.61499 7.83216 8.31835 8.34218 8.59403 8.86326 9.31461 10.89162 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.002835 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.595104 B = 9874.152045 C =10615.239469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.050 3.950 12 C -0.284 4.284 13 C 0.260 3.740 14 N -0.633 5.633 15 C 0.525 3.475 16 O -0.516 6.516 17 C -0.084 4.084 18 C -0.085 4.085 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.100 4.100 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.151 4.151 26 N -0.299 5.299 27 H 0.268 0.732 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.410 0.590 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 -20.465 5.833 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.006 3.994 14 N -0.283 5.283 15 C 0.311 3.689 16 O -0.390 6.390 17 C -0.105 4.105 18 C -0.104 4.104 19 C -0.171 4.171 20 C -0.182 4.182 21 C -0.170 4.170 22 C -0.119 4.119 23 C -0.167 4.167 24 C -0.177 4.177 25 C -0.189 4.189 26 N -0.130 5.130 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.724 -19.601 5.949 23.601 hybrid contribution 0.424 0.745 -0.228 0.887 sum 12.148 -18.856 5.721 23.149 Atomic orbital electron populations 1.69874 1.06154 1.27288 1.49216 1.24834 0.94872 0.98795 0.94269 0.86888 0.80243 0.83815 0.78995 1.19709 1.18957 1.20590 1.21114 0.87805 0.95698 1.52600 0.89659 1.20041 0.97433 0.73061 0.98152 1.48604 1.32868 1.10171 1.18525 1.22550 0.96083 0.94746 0.96525 1.21551 1.11606 0.96740 1.01608 1.19202 0.98704 0.86848 0.94637 1.42925 1.47723 1.07329 1.30337 1.20626 0.78949 0.84713 0.84626 1.90617 1.39293 1.83568 1.25499 1.21416 1.01843 0.92217 0.95037 1.22312 0.99708 0.92553 0.95781 1.22948 0.99978 0.95675 0.98542 1.22848 1.01156 0.97273 0.96909 1.22987 1.02153 0.95512 0.96383 1.22536 1.00569 0.97703 0.91095 1.23015 1.01405 0.96211 0.96038 1.22812 1.02166 0.96472 0.96288 1.23146 1.00207 0.98504 0.97027 1.77387 1.23812 0.95592 1.16175 0.92183 0.92946 0.94511 0.81485 0.82149 0.75141 0.88289 0.88395 0.90432 0.91032 0.90374 0.91665 0.91561 0.89912 0.88493 0.89881 0.91179 0.90143 0.91206 0.90599 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.15 9.79 -34.44 -0.34 -15.49 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.54 5.33 -5.20 -0.03 5.52 16 10 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.59 9.61 -39.83 -0.38 -5.97 16 13 C 0.26 5.23 8.11 -154.39 -1.25 3.98 16 14 N -0.63 -9.90 5.00 -11.13 -0.06 -9.95 16 15 C 0.52 7.43 7.08 -10.99 -0.08 7.35 16 16 O -0.52 -8.77 12.95 5.54 0.07 -8.69 16 17 C -0.08 -0.81 1.80 -91.78 -0.17 -0.98 16 18 C -0.08 -0.78 2.51 -89.81 -0.23 -1.01 16 19 C -0.13 -1.27 7.54 -25.82 -0.19 -1.46 16 20 C -0.14 -1.09 8.09 -25.83 -0.21 -1.30 16 21 C -0.13 -0.93 6.28 -25.92 -0.16 -1.10 16 22 C -0.10 -0.82 2.98 -89.81 -0.27 -1.09 16 23 C -0.13 -0.83 5.73 -25.82 -0.15 -0.98 16 24 C -0.14 -0.99 8.09 -25.83 -0.21 -1.20 16 25 C -0.15 -1.31 5.64 -25.92 -0.15 -1.45 16 26 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 29 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 30 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 31 H 0.16 3.06 5.92 -52.49 -0.31 2.75 16 32 H 0.41 5.52 5.59 -40.82 -0.23 5.29 16 33 H 0.10 0.85 7.82 -51.92 -0.41 0.45 16 34 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 35 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.52 6.87 -51.93 -0.36 0.16 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.49 7.57 -51.93 -0.39 0.10 16 43 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.08 0.71 6.66 -51.93 -0.35 0.37 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -32.98 370.39 -9.68 -42.66 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.45 Total: 7.17 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -4.10 Total: -12.34 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.88 Total: -49.92 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.98 -9.68 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285475012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.019 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds