Wall clock time and date at job start Tue Mar 31 2020 11:22:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 119.99710 * 2 1
4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1
5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1
6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1
7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3
8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1
9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1
10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2
11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7
12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9
13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10
14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11
15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12
16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13
17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13
18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14
19 19 C 1.53783 * 113.61264 * 279.14017 * 18 17 15
20 20 C 1.53958 * 87.01810 * 220.04314 * 19 18 17
21 21 C 1.53777 * 87.11051 * 25.36343 * 20 19 18
22 22 C 1.52997 * 109.47174 * 300.00546 * 17 15 14
23 23 C 1.53783 * 113.61569 * 159.13154 * 22 17 15
24 24 C 1.53957 * 87.01905 * 220.04665 * 23 22 17
25 25 C 1.53777 * 87.11091 * 25.36484 * 24 23 22
26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11
27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3
28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2
29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2
30 30 H 1.08001 * 126.06619 * 359.97438 * 11 10 9
31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10
32 32 H 0.97004 * 120.00050 * 180.02562 * 14 13 12
33 33 H 1.09009 * 109.46645 * 60.00093 * 17 15 14
34 34 H 1.08997 * 112.85027 * 50.33095 * 18 17 15
35 35 H 1.09002 * 113.61423 * 334.56442 * 19 18 17
36 36 H 1.09005 * 113.61585 * 105.46857 * 19 18 17
37 37 H 1.08997 * 113.53875 * 270.80910 * 20 19 18
38 38 H 1.09005 * 113.74153 * 139.93919 * 20 19 18
39 39 H 1.08999 * 113.61596 * 220.08620 * 21 20 19
40 40 H 1.09006 * 113.61573 * 89.18718 * 21 20 19
41 41 H 1.08998 * 112.84835 * 290.32829 * 22 17 15
42 42 H 1.08997 * 113.61366 * 334.56601 * 23 22 17
43 43 H 1.08999 * 113.61335 * 105.46860 * 23 22 17
44 44 H 1.09004 * 113.53803 * 270.80955 * 24 23 22
45 45 H 1.08998 * 113.74369 * 139.94761 * 24 23 22
46 46 H 1.09008 * 113.61338 * 220.09252 * 25 24 23
47 47 H 1.09001 * 113.61808 * 89.18781 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 1.4001
5 1 3.5466 1.4403 -0.7000
6 1 1.4466 2.6527 -0.7000
7 6 2.0045 -1.1940 -0.0057
8 1 1.4645 -2.1294 -0.0058
9 6 3.5115 -1.1940 -0.0121
10 7 3.9999 -2.5752 -0.0181
11 6 4.8469 -3.1128 -0.9209
12 6 5.0532 -4.4047 -0.5782
13 6 4.2965 -4.6708 0.5743
14 7 4.2277 -5.8973 1.2489
15 6 4.9306 -6.9550 0.7978
16 8 5.6232 -6.8453 -0.1920
17 6 4.8572 -8.2737 1.5235
18 6 5.7421 -9.2982 0.8107
19 6 5.0784 -9.9334 -0.4225
20 6 5.7061 -11.2658 0.0259
21 6 5.7084 -10.6947 1.4537
22 6 5.3453 -8.0920 2.9620
23 6 4.8568 -9.1899 3.9217
24 6 4.6507 -8.0754 4.9636
25 6 4.4963 -7.1051 3.7807
26 7 3.6647 -3.5705 0.9089
27 1 -0.4850 0.8400 0.0004
28 1 3.8711 -0.6780 -0.9023
29 1 3.8785 -0.6824 0.8776
30 1 5.2837 -2.6015 -1.7660
31 1 5.6844 -5.1081 -1.1009
32 1 3.6742 -5.9850 2.0407
33 1 3.8259 -8.6269 1.5316
34 1 6.7500 -8.9285 0.6222
35 1 3.9891 -9.9288 -0.3831
36 1 5.4703 -9.5619 -1.3694
37 1 6.7041 -11.4347 -0.3784
38 1 5.0475 -12.1254 -0.0994
39 1 6.6080 -10.9368 2.0194
40 1 4.7916 -10.8986 2.0070
41 1 6.4168 -7.9025 3.0246
42 1 3.9298 -9.6670 3.6036
43 1 5.6309 -9.9069 4.1951
44 1 5.5325 -7.8822 5.5746
45 1 3.7427 -8.1903 5.5555
46 1 4.9799 -6.1413 3.9404
47 1 3.4706 -7.0111 3.4239
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000285475012.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:22:02
Heat of formation + Delta-G solvation = 64.424221 kcal
Electronic energy + Delta-G solvation = -26637.849462 eV
Core-core repulsion = 23016.016137 eV
Total energy + Delta-G solvation = -3621.833325 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.37062 -41.46063 -39.44364 -38.74236 -36.18790 -35.18125 -33.24989 -31.92263
-30.97157 -29.00702 -27.02624 -26.25408 -25.42037 -25.05128 -24.01542 -22.52020
-21.75082 -20.81904 -20.61988 -19.79606 -19.11267 -18.32696 -17.92091 -17.13227
-16.72928 -16.49048 -16.34457 -16.00126 -15.76297 -15.21162 -15.14502 -14.83200
-14.69506 -14.42247 -13.90461 -13.79702 -13.40625 -13.36365 -13.15776 -13.07141
-12.91660 -12.67854 -12.61175 -12.33699 -12.16970 -12.03426 -11.83451 -11.66668
-11.45019 -11.37903 -11.28044 -11.22699 -11.09688 -10.88971 -10.68668 -10.54588
-9.77648 -9.11237 -8.38888 -6.49367 0.93021 1.31901 1.37994 1.40536
1.45737 1.49405 2.22688 2.27639 2.36810 2.93661 3.33160 3.56401
3.62943 3.85621 3.86983 3.91124 4.01889 4.03496 4.12415 4.17465
4.23236 4.33225 4.52231 4.56486 4.58764 4.79075 4.83661 4.85944
4.87465 4.89264 4.92417 4.95137 4.98729 5.06292 5.11754 5.15259
5.17840 5.20374 5.23130 5.25183 5.35077 5.45631 5.61612 5.69611
5.89086 5.99613 6.23781 6.39819 6.56510 6.99646 7.12443 7.13811
8.78240
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.020291 B = 0.002835 C = 0.002637
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1379.595104 B = 9874.152045 C =10615.239469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.942 5.942
2 C 0.015 3.985
3 Si 0.956 3.044
4 H -0.265 1.265
5 H -0.230 1.230
6 H -0.277 1.277
7 C -0.547 4.547
8 H 0.026 0.974
9 C 0.239 3.761
10 N -0.344 5.344
11 C 0.060 3.940
12 C -0.296 4.296
13 C 0.263 3.737
14 N -0.629 5.629
15 C 0.522 3.478
16 O -0.545 6.545
17 C -0.072 4.072
18 C -0.089 4.089
19 C -0.144 4.144
20 C -0.139 4.139
21 C -0.118 4.118
22 C -0.099 4.099
23 C -0.115 4.115
24 C -0.136 4.136
25 C -0.162 4.162
26 N -0.349 5.349
27 H 0.272 0.728
28 H 0.083 0.917
29 H 0.044 0.956
30 H 0.210 0.790
31 H 0.167 0.833
32 H 0.418 0.582
33 H 0.116 0.884
34 H 0.081 0.919
35 H 0.079 0.921
36 H 0.048 0.952
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.078 0.922
40 H 0.098 0.902
41 H 0.092 0.908
42 H 0.095 0.905
43 H 0.085 0.915
44 H 0.083 0.917
45 H 0.075 0.925
46 H 0.056 0.944
47 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.133 -21.222 6.372 26.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.184 4.184
3 Si 0.776 3.224
4 H -0.190 1.190
5 H -0.153 1.153
6 H -0.203 1.203
7 C -0.585 4.585
8 H 0.044 0.956
9 C 0.120 3.880
10 N -0.126 5.126
11 C -0.088 4.088
12 C -0.327 4.327
13 C 0.008 3.992
14 N -0.281 5.281
15 C 0.310 3.690
16 O -0.420 6.420
17 C -0.093 4.093
18 C -0.107 4.107
19 C -0.182 4.182
20 C -0.176 4.176
21 C -0.155 4.155
22 C -0.117 4.117
23 C -0.153 4.153
24 C -0.173 4.173
25 C -0.200 4.200
26 N -0.180 5.180
27 H 0.082 0.918
28 H 0.100 0.900
29 H 0.062 0.938
30 H 0.226 0.774
31 H 0.184 0.816
32 H 0.259 0.741
33 H 0.134 0.866
34 H 0.099 0.901
35 H 0.098 0.902
36 H 0.067 0.933
37 H 0.097 0.903
38 H 0.095 0.905
39 H 0.097 0.903
40 H 0.116 0.884
41 H 0.110 0.890
42 H 0.113 0.887
43 H 0.104 0.896
44 H 0.102 0.898
45 H 0.094 0.906
46 H 0.075 0.925
47 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 13.635 -20.408 6.499 25.390
hybrid contribution -0.197 0.845 -0.428 0.967
sum 13.438 -19.563 6.071 24.498
Atomic orbital electron populations
1.70048 1.08573 1.28832 1.50634 1.25924 0.95781 1.03534 0.93183
0.85613 0.79879 0.77212 0.79647 1.19005 1.15282 1.20266 1.21229
0.90493 0.93731 1.53096 0.95609 1.19895 0.94173 0.74360 0.99615
1.48516 1.34354 1.10029 1.19734 1.23235 0.94456 0.94721 0.96408
1.21757 1.11973 0.97187 1.01736 1.19630 0.97330 0.87549 0.94686
1.43190 1.48179 1.06293 1.30484 1.21605 0.77589 0.85489 0.84275
1.90590 1.40360 1.84118 1.26921 1.21498 1.03107 0.89332 0.95387
1.22313 0.98551 0.93609 0.96268 1.23014 1.00175 0.97337 0.97636
1.22832 1.01215 0.96502 0.97067 1.22952 1.03500 0.92844 0.96211
1.22537 1.00189 0.98859 0.90144 1.22990 1.02259 0.95685 0.94325
1.22807 1.02646 0.95927 0.95940 1.23206 1.00044 0.98125 0.98577
1.77308 1.25987 0.96812 1.17881 0.91847 0.89961 0.93788 0.77375
0.81565 0.74120 0.86592 0.90111 0.90211 0.93297 0.90302 0.90478
0.90343 0.88351 0.88958 0.88663 0.89637 0.89809 0.90601 0.92535
0.89851
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16
2 C 0.01 0.83 5.47 84.65 0.46 1.30 16
3 Si 0.96 41.01 27.47 68.60 1.88 42.89 16
4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
5 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16
6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16
7 C -0.55 -31.98 9.79 25.60 0.25 -31.73 16
8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16
9 C 0.24 11.25 5.33 85.63 0.46 11.71 16
10 N -0.34 -15.82 3.67 -351.85 -1.29 -17.11 16
11 C 0.06 2.28 11.43 83.52 0.96 3.24 16
12 C -0.30 -11.65 9.61 22.11 0.21 -11.43 16
13 C 0.26 10.83 8.11 133.33 1.08 11.91 16
14 N -0.63 -20.15 5.00 -307.52 -1.54 -21.68 16
15 C 0.52 14.87 7.08 87.66 0.62 15.49 16
16 O -0.54 -18.79 12.95 -3.08 -0.04 -18.83 16
17 C -0.07 -1.32 1.80 -11.54 -0.02 -1.34 16
18 C -0.09 -1.53 2.51 -10.27 -0.03 -1.56 16
19 C -0.14 -2.62 7.54 31.18 0.24 -2.39 16
20 C -0.14 -1.81 8.09 31.18 0.25 -1.56 16
21 C -0.12 -1.31 6.28 31.12 0.20 -1.12 16
22 C -0.10 -1.48 2.98 -10.27 -0.03 -1.51 16
23 C -0.12 -1.13 5.73 31.18 0.18 -0.95 16
24 C -0.14 -1.66 8.09 31.18 0.25 -1.40 16
25 C -0.16 -2.70 5.64 31.12 0.18 -2.53 16
26 N -0.35 -16.66 12.42 -54.45 -0.68 -17.34 16
27 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
28 H 0.08 3.37 7.12 -2.39 -0.02 3.35 16
29 H 0.04 2.00 7.57 -2.39 -0.02 1.98 16
30 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16
31 H 0.17 6.35 5.92 -2.91 -0.02 6.33 16
32 H 0.42 11.62 5.59 -92.71 -0.52 11.10 16
33 H 0.12 1.78 7.82 -2.38 -0.02 1.76 16
34 H 0.08 1.69 7.91 -2.39 -0.02 1.68 16
35 H 0.08 1.39 7.99 -2.39 -0.02 1.38 16
36 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16
37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16
39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
40 H 0.10 0.83 6.87 -2.38 -0.02 0.81 16
41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
42 H 0.09 0.76 7.57 -2.39 -0.02 0.74 16
43 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16
44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16
45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
46 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16
47 H 0.08 1.38 6.66 -2.39 -0.02 1.37 16
Total: -1.00 -76.08 370.39 4.29 -71.79
By element:
Atomic # 1 Polarization: 31.89 SS G_CDS: 0.39 Total: 32.28 kcal
Atomic # 6 Polarization: -19.13 SS G_CDS: 5.25 Total: -13.88 kcal
Atomic # 7 Polarization: -111.06 SS G_CDS: -3.21 Total: -114.26 kcal
Atomic # 8 Polarization: -18.79 SS G_CDS: -0.04 Total: -18.83 kcal
Atomic # 14 Polarization: 41.01 SS G_CDS: 1.88 Total: 42.89 kcal
Total: -76.08 4.29 -71.79 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000285475012.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.218 kcal
(2) G-P(sol) polarization free energy of solvation -76.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds