Wall clock time and date at job start Tue Mar 31 2020 11:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40154 * 125.97106 * 179.74212 * 13 12 11 15 15 C 1.34771 * 120.00504 * 0.02562 * 14 13 12 16 16 O 1.21297 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00677 * 179.97438 * 15 14 13 18 18 C 1.52995 * 109.47723 * 180.02562 * 17 15 14 19 19 C 1.53783 * 113.61264 * 279.14017 * 18 17 15 20 20 C 1.53958 * 87.01810 * 220.04314 * 19 18 17 21 21 C 1.53777 * 87.11051 * 25.36343 * 20 19 18 22 22 C 1.52997 * 109.47174 * 300.00546 * 17 15 14 23 23 C 1.53783 * 113.61569 * 159.13154 * 22 17 15 24 24 C 1.53957 * 87.01905 * 220.04665 * 23 22 17 25 25 C 1.53777 * 87.11091 * 25.36484 * 24 23 22 26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08001 * 126.06619 * 359.97438 * 11 10 9 31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 32 32 H 0.97004 * 120.00050 * 180.02562 * 14 13 12 33 33 H 1.09009 * 109.46645 * 60.00093 * 17 15 14 34 34 H 1.08997 * 112.85027 * 50.33095 * 18 17 15 35 35 H 1.09002 * 113.61423 * 334.56442 * 19 18 17 36 36 H 1.09005 * 113.61585 * 105.46857 * 19 18 17 37 37 H 1.08997 * 113.53875 * 270.80910 * 20 19 18 38 38 H 1.09005 * 113.74153 * 139.93919 * 20 19 18 39 39 H 1.08999 * 113.61596 * 220.08620 * 21 20 19 40 40 H 1.09006 * 113.61573 * 89.18718 * 21 20 19 41 41 H 1.08998 * 112.84835 * 290.32829 * 22 17 15 42 42 H 1.08997 * 113.61366 * 334.56601 * 23 22 17 43 43 H 1.08999 * 113.61335 * 105.46860 * 23 22 17 44 44 H 1.09004 * 113.53803 * 270.80955 * 24 23 22 45 45 H 1.08998 * 113.74369 * 139.94761 * 24 23 22 46 46 H 1.09008 * 113.61338 * 220.09252 * 25 24 23 47 47 H 1.09001 * 113.61808 * 89.18781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2277 -5.8973 1.2489 15 6 4.9306 -6.9550 0.7978 16 8 5.6232 -6.8453 -0.1920 17 6 4.8572 -8.2737 1.5235 18 6 5.7421 -9.2982 0.8107 19 6 5.0784 -9.9334 -0.4225 20 6 5.7061 -11.2658 0.0259 21 6 5.7084 -10.6947 1.4537 22 6 5.3453 -8.0920 2.9620 23 6 4.8568 -9.1899 3.9217 24 6 4.6507 -8.0754 4.9636 25 6 4.4963 -7.1051 3.7807 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2837 -2.6015 -1.7660 31 1 5.6844 -5.1081 -1.1009 32 1 3.6742 -5.9850 2.0407 33 1 3.8259 -8.6269 1.5316 34 1 6.7500 -8.9285 0.6222 35 1 3.9891 -9.9288 -0.3831 36 1 5.4703 -9.5619 -1.3694 37 1 6.7041 -11.4347 -0.3784 38 1 5.0475 -12.1254 -0.0994 39 1 6.6080 -10.9368 2.0194 40 1 4.7916 -10.8986 2.0070 41 1 6.4168 -7.9025 3.0246 42 1 3.9298 -9.6670 3.6036 43 1 5.6309 -9.9069 4.1951 44 1 5.5325 -7.8822 5.5746 45 1 3.7427 -8.1903 5.5555 46 1 4.9799 -6.1413 3.9404 47 1 3.4706 -7.0111 3.4239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285475012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:02 Heat of formation + Delta-G solvation = 64.424221 kcal Electronic energy + Delta-G solvation = -26637.849462 eV Core-core repulsion = 23016.016137 eV Total energy + Delta-G solvation = -3621.833325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37062 -41.46063 -39.44364 -38.74236 -36.18790 -35.18125 -33.24989 -31.92263 -30.97157 -29.00702 -27.02624 -26.25408 -25.42037 -25.05128 -24.01542 -22.52020 -21.75082 -20.81904 -20.61988 -19.79606 -19.11267 -18.32696 -17.92091 -17.13227 -16.72928 -16.49048 -16.34457 -16.00126 -15.76297 -15.21162 -15.14502 -14.83200 -14.69506 -14.42247 -13.90461 -13.79702 -13.40625 -13.36365 -13.15776 -13.07141 -12.91660 -12.67854 -12.61175 -12.33699 -12.16970 -12.03426 -11.83451 -11.66668 -11.45019 -11.37903 -11.28044 -11.22699 -11.09688 -10.88971 -10.68668 -10.54588 -9.77648 -9.11237 -8.38888 -6.49367 0.93021 1.31901 1.37994 1.40536 1.45737 1.49405 2.22688 2.27639 2.36810 2.93661 3.33160 3.56401 3.62943 3.85621 3.86983 3.91124 4.01889 4.03496 4.12415 4.17465 4.23236 4.33225 4.52231 4.56486 4.58764 4.79075 4.83661 4.85944 4.87465 4.89264 4.92417 4.95137 4.98729 5.06292 5.11754 5.15259 5.17840 5.20374 5.23130 5.25183 5.35077 5.45631 5.61612 5.69611 5.89086 5.99613 6.23781 6.39819 6.56510 6.99646 7.12443 7.13811 8.78240 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.002835 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.595104 B = 9874.152045 C =10615.239469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.230 1.230 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.060 3.940 12 C -0.296 4.296 13 C 0.263 3.737 14 N -0.629 5.629 15 C 0.522 3.478 16 O -0.545 6.545 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.162 4.162 26 N -0.349 5.349 27 H 0.272 0.728 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.210 0.790 31 H 0.167 0.833 32 H 0.418 0.582 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.133 -21.222 6.372 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.153 1.153 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.126 5.126 11 C -0.088 4.088 12 C -0.327 4.327 13 C 0.008 3.992 14 N -0.281 5.281 15 C 0.310 3.690 16 O -0.420 6.420 17 C -0.093 4.093 18 C -0.107 4.107 19 C -0.182 4.182 20 C -0.176 4.176 21 C -0.155 4.155 22 C -0.117 4.117 23 C -0.153 4.153 24 C -0.173 4.173 25 C -0.200 4.200 26 N -0.180 5.180 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.226 0.774 31 H 0.184 0.816 32 H 0.259 0.741 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.635 -20.408 6.499 25.390 hybrid contribution -0.197 0.845 -0.428 0.967 sum 13.438 -19.563 6.071 24.498 Atomic orbital electron populations 1.70048 1.08573 1.28832 1.50634 1.25924 0.95781 1.03534 0.93183 0.85613 0.79879 0.77212 0.79647 1.19005 1.15282 1.20266 1.21229 0.90493 0.93731 1.53096 0.95609 1.19895 0.94173 0.74360 0.99615 1.48516 1.34354 1.10029 1.19734 1.23235 0.94456 0.94721 0.96408 1.21757 1.11973 0.97187 1.01736 1.19630 0.97330 0.87549 0.94686 1.43190 1.48179 1.06293 1.30484 1.21605 0.77589 0.85489 0.84275 1.90590 1.40360 1.84118 1.26921 1.21498 1.03107 0.89332 0.95387 1.22313 0.98551 0.93609 0.96268 1.23014 1.00175 0.97337 0.97636 1.22832 1.01215 0.96502 0.97067 1.22952 1.03500 0.92844 0.96211 1.22537 1.00189 0.98859 0.90144 1.22990 1.02259 0.95685 0.94325 1.22807 1.02646 0.95927 0.95940 1.23206 1.00044 0.98125 0.98577 1.77308 1.25987 0.96812 1.17881 0.91847 0.89961 0.93788 0.77375 0.81565 0.74120 0.86592 0.90111 0.90211 0.93297 0.90302 0.90478 0.90343 0.88351 0.88958 0.88663 0.89637 0.89809 0.90601 0.92535 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 2 C 0.01 0.83 5.47 84.65 0.46 1.30 16 3 Si 0.96 41.01 27.47 68.60 1.88 42.89 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.98 9.79 25.60 0.25 -31.73 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.24 11.25 5.33 85.63 0.46 11.71 16 10 N -0.34 -15.82 3.67 -351.85 -1.29 -17.11 16 11 C 0.06 2.28 11.43 83.52 0.96 3.24 16 12 C -0.30 -11.65 9.61 22.11 0.21 -11.43 16 13 C 0.26 10.83 8.11 133.33 1.08 11.91 16 14 N -0.63 -20.15 5.00 -307.52 -1.54 -21.68 16 15 C 0.52 14.87 7.08 87.66 0.62 15.49 16 16 O -0.54 -18.79 12.95 -3.08 -0.04 -18.83 16 17 C -0.07 -1.32 1.80 -11.54 -0.02 -1.34 16 18 C -0.09 -1.53 2.51 -10.27 -0.03 -1.56 16 19 C -0.14 -2.62 7.54 31.18 0.24 -2.39 16 20 C -0.14 -1.81 8.09 31.18 0.25 -1.56 16 21 C -0.12 -1.31 6.28 31.12 0.20 -1.12 16 22 C -0.10 -1.48 2.98 -10.27 -0.03 -1.51 16 23 C -0.12 -1.13 5.73 31.18 0.18 -0.95 16 24 C -0.14 -1.66 8.09 31.18 0.25 -1.40 16 25 C -0.16 -2.70 5.64 31.12 0.18 -2.53 16 26 N -0.35 -16.66 12.42 -54.45 -0.68 -17.34 16 27 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.08 3.37 7.12 -2.39 -0.02 3.35 16 29 H 0.04 2.00 7.57 -2.39 -0.02 1.98 16 30 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 31 H 0.17 6.35 5.92 -2.91 -0.02 6.33 16 32 H 0.42 11.62 5.59 -92.71 -0.52 11.10 16 33 H 0.12 1.78 7.82 -2.38 -0.02 1.76 16 34 H 0.08 1.69 7.91 -2.39 -0.02 1.68 16 35 H 0.08 1.39 7.99 -2.39 -0.02 1.38 16 36 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.83 6.87 -2.38 -0.02 0.81 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 0.76 7.57 -2.39 -0.02 0.74 16 43 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.08 1.38 6.66 -2.39 -0.02 1.37 16 Total: -1.00 -76.08 370.39 4.29 -71.79 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.39 Total: 32.28 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.25 Total: -13.88 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -3.21 Total: -114.26 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.88 Total: 42.89 kcal Total: -76.08 4.29 -71.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285475012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.218 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds