Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46664 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47236 * 59.99455 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47592 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11 16 16 C 1.38877 * 120.74471 * 90.00272 * 15 14 13 17 17 C 1.38025 * 119.32870 * 179.97438 * 16 15 14 18 18 N 1.31971 * 120.85560 * 0.02562 * 17 16 15 19 19 C 1.32401 * 121.62243 * 359.97438 * 18 17 16 20 20 N 1.39003 * 119.70418 * 180.02562 * 19 18 17 21 21 C 1.46846 * 111.00008 * 124.21041 * 20 19 18 22 22 C 1.53029 * 109.52176 * 174.15678 * 21 20 19 23 23 C 1.53124 * 109.27941 * 59.18115 * 22 21 20 24 24 C 1.53114 * 109.15941 * 302.34381 * 23 22 21 25 25 C 1.46846 * 110.99839 * 359.97438 * 20 19 18 26 26 C 1.38292 * 120.74558 * 269.71720 * 15 14 13 27 27 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 29 29 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 30 30 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 31 31 H 1.09004 * 109.47368 * 300.00063 * 10 9 7 32 32 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46609 * 60.00363 * 14 13 11 34 34 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 35 35 H 1.08004 * 120.33854 * 359.97438 * 16 15 14 36 36 H 1.08006 * 119.57170 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.45818 * 294.17697 * 21 20 19 38 38 H 1.09005 * 109.46034 * 54.14158 * 21 20 19 39 39 H 1.09001 * 109.51055 * 299.23984 * 22 21 20 40 40 H 1.09003 * 109.50295 * 179.11712 * 22 21 20 41 41 H 1.08996 * 109.52588 * 182.43525 * 23 22 21 42 42 H 1.09005 * 109.57050 * 62.27763 * 23 22 21 43 43 H 1.08994 * 109.50409 * 297.70879 * 24 23 22 44 44 H 1.09001 * 109.53339 * 177.61192 * 24 23 22 45 45 H 1.08999 * 109.46763 * 305.85547 * 25 20 19 46 46 H 1.09004 * 109.46017 * 65.84056 * 25 20 19 47 47 H 1.07999 * 120.45190 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0008 15 6 2.4123 -8.5486 0.0009 16 6 2.8735 -9.0882 1.1946 17 6 3.7698 -10.1373 1.1606 18 7 4.1914 -10.6304 0.0113 19 6 3.7752 -10.1435 -1.1474 20 7 4.2449 -10.6937 -2.3344 21 6 3.1332 -11.1380 -3.1847 22 6 3.6778 -11.6019 -4.5374 23 6 4.6671 -12.7499 -4.3174 24 6 5.7891 -12.2755 -3.3898 25 6 5.1837 -11.7915 -2.0702 26 6 2.8673 -9.0899 -1.1875 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6044 0.8904 31 1 2.8719 -3.6044 -0.8895 32 1 3.1356 -6.1345 0.0004 33 1 0.8061 -7.4607 -0.8890 34 1 0.8066 -7.4610 0.8910 35 1 2.5344 -8.6909 2.1399 36 1 4.1308 -10.5602 2.0865 37 1 2.6130 -11.9640 -2.6999 38 1 2.4394 -10.3112 -3.3367 39 1 4.1864 -10.7725 -5.0289 40 1 2.8540 -11.9464 -5.1626 41 1 5.0901 -13.0547 -5.2745 42 1 4.1505 -13.5947 -3.8618 43 1 6.3309 -11.4567 -3.8632 44 1 6.4742 -13.1006 -3.1949 45 1 5.9788 -11.4394 -1.4130 46 1 4.6540 -12.6148 -1.5907 47 1 2.5260 -8.6972 -2.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292364743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = -12.038114 kcal Electronic energy + Delta-G solvation = -25417.907954 eV Core-core repulsion = 21792.758973 eV Total energy + Delta-G solvation = -3625.148981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11956 -39.29063 -38.65516 -35.37272 -34.07957 -33.44502 -32.52529 -31.30830 -30.86588 -29.96375 -27.32237 -25.37118 -25.05374 -23.93144 -22.63258 -21.84078 -21.25214 -20.11840 -19.67932 -17.74201 -16.94798 -16.79010 -16.19977 -15.77222 -15.65618 -15.28885 -15.17062 -14.96694 -14.64642 -14.58190 -14.40118 -13.87936 -13.66238 -13.50878 -13.16500 -13.11699 -12.79113 -12.44069 -12.21661 -12.16225 -11.81588 -11.64768 -11.27972 -11.15675 -10.94149 -10.93451 -10.89238 -10.58121 -10.24565 -10.05634 -9.95969 -9.76274 -9.66574 -9.16121 -8.99148 -8.85707 -8.38942 -8.31874 -5.95861 -4.00064 0.87245 0.89451 3.07520 3.22749 3.33015 3.37706 3.40617 3.43924 3.80344 4.09726 4.31613 4.39187 4.44939 4.48251 4.48991 4.74335 4.75601 4.87131 4.89877 4.95676 5.10713 5.17676 5.27429 5.32662 5.35445 5.39187 5.43690 5.49401 5.49836 5.56361 5.65197 5.69886 5.76127 5.79381 5.92738 6.09393 6.20654 6.23420 6.24819 6.40197 6.62466 6.86482 6.89250 7.70745 7.75072 7.83913 7.86439 8.07397 8.38965 8.74363 9.08647 9.63481 11.15109 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002073 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.766145 B =13503.458507 C =13997.141207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.534 6.534 13 N -0.740 5.740 14 C 0.159 3.841 15 C -0.034 4.034 16 C -0.184 4.184 17 C 0.124 3.876 18 N -0.519 5.519 19 C 0.310 3.690 20 N -0.476 5.476 21 C 0.059 3.941 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.122 4.122 25 C 0.068 3.932 26 C -0.169 4.169 27 H 0.260 0.740 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.399 0.601 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.422 -29.077 -4.553 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.409 6.409 13 N -0.395 5.395 14 C 0.035 3.965 15 C -0.043 4.043 16 C -0.205 4.205 17 C -0.033 4.033 18 N -0.234 5.234 19 C 0.079 3.921 20 N -0.193 5.193 21 C -0.067 4.067 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.058 4.058 26 C -0.192 4.192 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.233 0.767 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.208 -29.308 -4.883 31.417 hybrid contribution 0.023 1.066 0.452 1.159 sum 10.231 -28.242 -4.430 30.363 Atomic orbital electron populations 1.70010 1.06047 1.26463 1.50314 1.25035 0.94839 0.99260 0.95334 0.86529 0.80011 0.83815 0.77573 1.19749 1.21016 1.21032 1.21264 0.92983 0.90992 1.51214 0.92533 1.18910 0.93180 0.89377 0.98642 1.21873 1.00731 0.91729 1.02587 1.21612 0.88651 0.85488 0.74275 1.90676 1.14446 1.87533 1.48209 1.46224 1.10153 1.04817 1.78261 1.20113 0.92281 0.80683 1.03413 1.20236 0.95608 0.95581 0.92827 1.21998 1.00492 0.99205 0.98843 1.22516 0.92786 0.92678 0.95299 1.67599 1.27686 1.30104 0.98018 1.19793 0.91119 0.92667 0.88539 1.59058 1.15914 1.32454 1.11900 1.22283 0.91220 0.99891 0.93336 1.21628 0.99354 0.98902 0.95748 1.21616 0.96808 0.97808 0.99924 1.21684 0.97852 1.01084 0.95379 1.21965 0.95562 0.91312 0.96993 1.21508 1.00306 0.98099 0.99290 0.93012 0.95807 0.95791 0.90181 0.90165 0.76731 0.90572 0.90412 0.84500 0.82541 0.93688 0.89685 0.90614 0.90819 0.91482 0.92127 0.90989 0.91081 0.89562 0.93451 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.51 9.73 7.83 -10.99 -0.09 9.64 16 12 O -0.53 -12.45 15.98 5.56 0.09 -12.36 16 13 N -0.74 -10.29 5.55 -61.47 -0.34 -10.64 16 14 C 0.16 1.93 5.85 -5.19 -0.03 1.90 16 15 C -0.03 -0.35 5.28 -104.36 -0.55 -0.90 16 16 C -0.18 -1.69 9.81 -39.42 -0.39 -2.07 16 17 C 0.12 1.13 11.17 -17.57 -0.20 0.93 16 18 N -0.52 -5.55 8.68 -12.43 -0.11 -5.65 16 19 C 0.31 3.28 6.41 -155.02 -0.99 2.29 16 20 N -0.48 -4.43 4.68 -173.24 -0.81 -5.24 16 21 C 0.06 0.44 5.24 -3.84 -0.02 0.42 16 22 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16 23 C -0.12 -0.70 6.00 -26.61 -0.16 -0.86 16 24 C -0.12 -0.78 6.09 -26.65 -0.16 -0.95 16 25 C 0.07 0.57 4.65 -3.83 -0.02 0.56 16 26 C -0.17 -1.73 8.88 -39.23 -0.35 -2.08 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.40 4.66 8.46 -40.82 -0.35 4.31 16 33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 36 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.62 6.66 -51.93 -0.35 0.27 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 46 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 47 H 0.14 1.31 7.13 -52.49 -0.37 0.94 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -34.48 382.73 -11.25 -45.73 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.76 Total: 0.08 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.80 Total: -7.65 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.52 Total: -48.29 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.48 -11.25 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292364743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.694 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds