Wall clock time and date at job start Tue Mar 31 2020 11:10:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86799 * 120.00397 * 2 1
4 4 H 1.48494 * 109.47482 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.46664 * 299.99837 * 3 2 1
6 6 H 1.48497 * 109.47236 * 59.99455 * 3 2 1
7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.47592 * 179.97438 * 10 9 7
12 12 O 1.21282 * 119.99683 * 0.02562 * 11 10 9
13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9
14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10
15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11
16 16 C 1.38877 * 120.74471 * 90.00272 * 15 14 13
17 17 C 1.38025 * 119.32870 * 179.97438 * 16 15 14
18 18 N 1.31971 * 120.85560 * 0.02562 * 17 16 15
19 19 C 1.32401 * 121.62243 * 359.97438 * 18 17 16
20 20 N 1.39003 * 119.70418 * 180.02562 * 19 18 17
21 21 C 1.46846 * 111.00008 * 124.21041 * 20 19 18
22 22 C 1.53029 * 109.52176 * 174.15678 * 21 20 19
23 23 C 1.53124 * 109.27941 * 59.18115 * 22 21 20
24 24 C 1.53114 * 109.15941 * 302.34381 * 23 22 21
25 25 C 1.46846 * 110.99839 * 359.97438 * 20 19 18
26 26 C 1.38292 * 120.74558 * 269.71720 * 15 14 13
27 27 H 0.97002 * 119.99803 * 0.02562 * 1 2 3
28 28 H 1.09004 * 109.47103 * 59.99686 * 9 7 2
29 29 H 1.09000 * 109.47247 * 299.99564 * 9 7 2
30 30 H 1.08996 * 109.47261 * 59.99679 * 10 9 7
31 31 H 1.09004 * 109.47368 * 300.00063 * 10 9 7
32 32 H 0.97010 * 119.99854 * 0.02562 * 13 11 10
33 33 H 1.09000 * 109.46609 * 60.00363 * 14 13 11
34 34 H 1.09000 * 109.47175 * 300.00158 * 14 13 11
35 35 H 1.08004 * 120.33854 * 359.97438 * 16 15 14
36 36 H 1.08006 * 119.57170 * 180.02562 * 17 16 15
37 37 H 1.08996 * 109.45818 * 294.17697 * 21 20 19
38 38 H 1.09005 * 109.46034 * 54.14158 * 21 20 19
39 39 H 1.09001 * 109.51055 * 299.23984 * 22 21 20
40 40 H 1.09003 * 109.50295 * 179.11712 * 22 21 20
41 41 H 1.08996 * 109.52588 * 182.43525 * 23 22 21
42 42 H 1.09005 * 109.57050 * 62.27763 * 23 22 21
43 43 H 1.08994 * 109.50409 * 297.70879 * 24 23 22
44 44 H 1.09001 * 109.53339 * 177.61192 * 24 23 22
45 45 H 1.08999 * 109.46763 * 305.85547 * 25 20 19
46 46 H 1.09004 * 109.46017 * 65.84056 * 25 20 19
47 47 H 1.07999 * 120.45190 * 0.02562 * 26 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3963 -1.2125
6 1 1.8905 2.3965 1.2124
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1942 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4917 -4.9672 0.0012
12 8 0.2789 -4.9672 0.0011
13 7 2.1655 -6.1344 0.0008
14 6 1.4329 -7.4031 0.0008
15 6 2.4123 -8.5486 0.0009
16 6 2.8735 -9.0882 1.1946
17 6 3.7698 -10.1373 1.1606
18 7 4.1914 -10.6304 0.0113
19 6 3.7752 -10.1435 -1.1474
20 7 4.2449 -10.6937 -2.3344
21 6 3.1332 -11.1380 -3.1847
22 6 3.6778 -11.6019 -4.5374
23 6 4.6671 -12.7499 -4.3174
24 6 5.7891 -12.2755 -3.3898
25 6 5.1837 -11.7915 -2.0702
26 6 2.8673 -9.0899 -1.1875
27 1 -0.4850 0.8401 -0.0004
28 1 0.6246 -2.5570 -0.8897
29 1 0.6241 -2.5567 0.8903
30 1 2.8719 -3.6044 0.8904
31 1 2.8719 -3.6044 -0.8895
32 1 3.1356 -6.1345 0.0004
33 1 0.8061 -7.4607 -0.8890
34 1 0.8066 -7.4610 0.8910
35 1 2.5344 -8.6909 2.1399
36 1 4.1308 -10.5602 2.0865
37 1 2.6130 -11.9640 -2.6999
38 1 2.4394 -10.3112 -3.3367
39 1 4.1864 -10.7725 -5.0289
40 1 2.8540 -11.9464 -5.1626
41 1 5.0901 -13.0547 -5.2745
42 1 4.1505 -13.5947 -3.8618
43 1 6.3309 -11.4567 -3.8632
44 1 6.4742 -13.1006 -3.1949
45 1 5.9788 -11.4394 -1.4130
46 1 4.6540 -12.6148 -1.5907
47 1 2.5260 -8.6972 -2.1340
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000292364743.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:24
Heat of formation + Delta-G solvation = -12.038114 kcal
Electronic energy + Delta-G solvation = -25417.907954 eV
Core-core repulsion = 21792.758973 eV
Total energy + Delta-G solvation = -3625.148981 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.11956 -39.29063 -38.65516 -35.37272 -34.07957 -33.44502 -32.52529 -31.30830
-30.86588 -29.96375 -27.32237 -25.37118 -25.05374 -23.93144 -22.63258 -21.84078
-21.25214 -20.11840 -19.67932 -17.74201 -16.94798 -16.79010 -16.19977 -15.77222
-15.65618 -15.28885 -15.17062 -14.96694 -14.64642 -14.58190 -14.40118 -13.87936
-13.66238 -13.50878 -13.16500 -13.11699 -12.79113 -12.44069 -12.21661 -12.16225
-11.81588 -11.64768 -11.27972 -11.15675 -10.94149 -10.93451 -10.89238 -10.58121
-10.24565 -10.05634 -9.95969 -9.76274 -9.66574 -9.16121 -8.99148 -8.85707
-8.38942 -8.31874 -5.95861 -4.00064 0.87245 0.89451 3.07520 3.22749
3.33015 3.37706 3.40617 3.43924 3.80344 4.09726 4.31613 4.39187
4.44939 4.48251 4.48991 4.74335 4.75601 4.87131 4.89877 4.95676
5.10713 5.17676 5.27429 5.32662 5.35445 5.39187 5.43690 5.49401
5.49836 5.56361 5.65197 5.69886 5.76127 5.79381 5.92738 6.09393
6.20654 6.23420 6.24819 6.40197 6.62466 6.86482 6.89250 7.70745
7.75072 7.83913 7.86439 8.07397 8.38965 8.74363 9.08647 9.63481
11.15109
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.020041 B = 0.002073 C = 0.002000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1396.766145 B =13503.458507 C =13997.141207
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.057 3.943
3 Si 0.893 3.107
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.526 4.526
8 H 0.056 0.944
9 C 0.036 3.964
10 C -0.129 4.129
11 C 0.511 3.489
12 O -0.534 6.534
13 N -0.740 5.740
14 C 0.159 3.841
15 C -0.034 4.034
16 C -0.184 4.184
17 C 0.124 3.876
18 N -0.519 5.519
19 C 0.310 3.690
20 N -0.476 5.476
21 C 0.059 3.941
22 C -0.119 4.119
23 C -0.124 4.124
24 C -0.122 4.122
25 C 0.068 3.932
26 C -0.169 4.169
27 H 0.260 0.740
28 H 0.024 0.976
29 H 0.024 0.976
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.399 0.601
33 H 0.076 0.924
34 H 0.078 0.922
35 H 0.137 0.863
36 H 0.157 0.843
37 H 0.045 0.955
38 H 0.085 0.915
39 H 0.075 0.925
40 H 0.073 0.927
41 H 0.066 0.934
42 H 0.060 0.940
43 H 0.071 0.929
44 H 0.071 0.929
45 H 0.086 0.914
46 H 0.047 0.953
47 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.422 -29.077 -4.553 31.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.145 4.145
3 Si 0.721 3.279
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.565 4.565
8 H 0.075 0.925
9 C -0.001 4.001
10 C -0.169 4.169
11 C 0.300 3.700
12 O -0.409 6.409
13 N -0.395 5.395
14 C 0.035 3.965
15 C -0.043 4.043
16 C -0.205 4.205
17 C -0.033 4.033
18 N -0.234 5.234
19 C 0.079 3.921
20 N -0.193 5.193
21 C -0.067 4.067
22 C -0.156 4.156
23 C -0.162 4.162
24 C -0.160 4.160
25 C -0.058 4.058
26 C -0.192 4.192
27 H 0.070 0.930
28 H 0.042 0.958
29 H 0.042 0.958
30 H 0.098 0.902
31 H 0.098 0.902
32 H 0.233 0.767
33 H 0.094 0.906
34 H 0.096 0.904
35 H 0.155 0.845
36 H 0.175 0.825
37 H 0.063 0.937
38 H 0.103 0.897
39 H 0.094 0.906
40 H 0.092 0.908
41 H 0.085 0.915
42 H 0.079 0.921
43 H 0.090 0.910
44 H 0.089 0.911
45 H 0.104 0.896
46 H 0.065 0.935
47 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 10.208 -29.308 -4.883 31.417
hybrid contribution 0.023 1.066 0.452 1.159
sum 10.231 -28.242 -4.430 30.363
Atomic orbital electron populations
1.70010 1.06047 1.26463 1.50314 1.25035 0.94839 0.99260 0.95334
0.86529 0.80011 0.83815 0.77573 1.19749 1.21016 1.21032 1.21264
0.92983 0.90992 1.51214 0.92533 1.18910 0.93180 0.89377 0.98642
1.21873 1.00731 0.91729 1.02587 1.21612 0.88651 0.85488 0.74275
1.90676 1.14446 1.87533 1.48209 1.46224 1.10153 1.04817 1.78261
1.20113 0.92281 0.80683 1.03413 1.20236 0.95608 0.95581 0.92827
1.21998 1.00492 0.99205 0.98843 1.22516 0.92786 0.92678 0.95299
1.67599 1.27686 1.30104 0.98018 1.19793 0.91119 0.92667 0.88539
1.59058 1.15914 1.32454 1.11900 1.22283 0.91220 0.99891 0.93336
1.21628 0.99354 0.98902 0.95748 1.21616 0.96808 0.97808 0.99924
1.21684 0.97852 1.01084 0.95379 1.21965 0.95562 0.91312 0.96993
1.21508 1.00306 0.98099 0.99290 0.93012 0.95807 0.95791 0.90181
0.90165 0.76731 0.90572 0.90412 0.84500 0.82541 0.93688 0.89685
0.90614 0.90819 0.91482 0.92127 0.90989 0.91081 0.89562 0.93451
0.84441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16
4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16
8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16
9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16
10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16
11 C 0.51 9.73 7.83 -10.99 -0.09 9.64 16
12 O -0.53 -12.45 15.98 5.56 0.09 -12.36 16
13 N -0.74 -10.29 5.55 -61.47 -0.34 -10.64 16
14 C 0.16 1.93 5.85 -5.19 -0.03 1.90 16
15 C -0.03 -0.35 5.28 -104.36 -0.55 -0.90 16
16 C -0.18 -1.69 9.81 -39.42 -0.39 -2.07 16
17 C 0.12 1.13 11.17 -17.57 -0.20 0.93 16
18 N -0.52 -5.55 8.68 -12.43 -0.11 -5.65 16
19 C 0.31 3.28 6.41 -155.02 -0.99 2.29 16
20 N -0.48 -4.43 4.68 -173.24 -0.81 -5.24 16
21 C 0.06 0.44 5.24 -3.84 -0.02 0.42 16
22 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16
23 C -0.12 -0.70 6.00 -26.61 -0.16 -0.86 16
24 C -0.12 -0.78 6.09 -26.65 -0.16 -0.95 16
25 C 0.07 0.57 4.65 -3.83 -0.02 0.56 16
26 C -0.17 -1.73 8.88 -39.23 -0.35 -2.08 16
27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16
29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16
30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16
31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
32 H 0.40 4.66 8.46 -40.82 -0.35 4.31 16
33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16
34 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16
35 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16
36 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16
37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.08 0.62 6.66 -51.93 -0.35 0.27 16
39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
45 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16
46 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16
47 H 0.14 1.31 7.13 -52.49 -0.37 0.94 16
LS Contribution 382.73 15.07 5.77 5.77
Total: -1.00 -34.48 382.73 -11.25 -45.73
By element:
Atomic # 1 Polarization: 7.84 SS G_CDS: -7.76 Total: 0.08 kcal
Atomic # 6 Polarization: -3.85 SS G_CDS: -3.80 Total: -7.65 kcal
Atomic # 7 Polarization: -47.77 SS G_CDS: -0.52 Total: -48.29 kcal
Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -34.48 -11.25 -45.73 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292364743.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.694 kcal
(2) G-P(sol) polarization free energy of solvation -34.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds