Wall clock time and date at job start Tue Mar 31 2020 11:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46664 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47236 * 59.99455 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47592 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11 16 16 C 1.38877 * 120.74471 * 90.00272 * 15 14 13 17 17 C 1.38025 * 119.32870 * 179.97438 * 16 15 14 18 18 N 1.31971 * 120.85560 * 0.02562 * 17 16 15 19 19 C 1.32401 * 121.62243 * 359.97438 * 18 17 16 20 20 N 1.39003 * 119.70418 * 180.02562 * 19 18 17 21 21 C 1.46846 * 111.00008 * 124.21041 * 20 19 18 22 22 C 1.53029 * 109.52176 * 174.15678 * 21 20 19 23 23 C 1.53124 * 109.27941 * 59.18115 * 22 21 20 24 24 C 1.53114 * 109.15941 * 302.34381 * 23 22 21 25 25 C 1.46846 * 110.99839 * 359.97438 * 20 19 18 26 26 C 1.38292 * 120.74558 * 269.71720 * 15 14 13 27 27 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 29 29 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 30 30 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 31 31 H 1.09004 * 109.47368 * 300.00063 * 10 9 7 32 32 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46609 * 60.00363 * 14 13 11 34 34 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 35 35 H 1.08004 * 120.33854 * 359.97438 * 16 15 14 36 36 H 1.08006 * 119.57170 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.45818 * 294.17697 * 21 20 19 38 38 H 1.09005 * 109.46034 * 54.14158 * 21 20 19 39 39 H 1.09001 * 109.51055 * 299.23984 * 22 21 20 40 40 H 1.09003 * 109.50295 * 179.11712 * 22 21 20 41 41 H 1.08996 * 109.52588 * 182.43525 * 23 22 21 42 42 H 1.09005 * 109.57050 * 62.27763 * 23 22 21 43 43 H 1.08994 * 109.50409 * 297.70879 * 24 23 22 44 44 H 1.09001 * 109.53339 * 177.61192 * 24 23 22 45 45 H 1.08999 * 109.46763 * 305.85547 * 25 20 19 46 46 H 1.09004 * 109.46017 * 65.84056 * 25 20 19 47 47 H 1.07999 * 120.45190 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0008 15 6 2.4123 -8.5486 0.0009 16 6 2.8735 -9.0882 1.1946 17 6 3.7698 -10.1373 1.1606 18 7 4.1914 -10.6304 0.0113 19 6 3.7752 -10.1435 -1.1474 20 7 4.2449 -10.6937 -2.3344 21 6 3.1332 -11.1380 -3.1847 22 6 3.6778 -11.6019 -4.5374 23 6 4.6671 -12.7499 -4.3174 24 6 5.7891 -12.2755 -3.3898 25 6 5.1837 -11.7915 -2.0702 26 6 2.8673 -9.0899 -1.1875 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6044 0.8904 31 1 2.8719 -3.6044 -0.8895 32 1 3.1356 -6.1345 0.0004 33 1 0.8061 -7.4607 -0.8890 34 1 0.8066 -7.4610 0.8910 35 1 2.5344 -8.6909 2.1399 36 1 4.1308 -10.5602 2.0865 37 1 2.6130 -11.9640 -2.6999 38 1 2.4394 -10.3112 -3.3367 39 1 4.1864 -10.7725 -5.0289 40 1 2.8540 -11.9464 -5.1626 41 1 5.0901 -13.0547 -5.2745 42 1 4.1505 -13.5947 -3.8618 43 1 6.3309 -11.4567 -3.8632 44 1 6.4742 -13.1006 -3.1949 45 1 5.9788 -11.4394 -1.4130 46 1 4.6540 -12.6148 -1.5907 47 1 2.5260 -8.6972 -2.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292364743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:23 Heat of formation + Delta-G solvation = -34.165247 kcal Electronic energy + Delta-G solvation = -25418.867459 eV Core-core repulsion = 21792.758973 eV Total energy + Delta-G solvation = -3626.108485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.86514 -40.67133 -39.43518 -36.50276 -35.54088 -34.74362 -33.63378 -32.83066 -31.84224 -30.65545 -28.69176 -27.01416 -25.73384 -24.69238 -23.54403 -23.27374 -22.20209 -21.25836 -20.65364 -18.91642 -18.40104 -17.72234 -17.38936 -17.03449 -16.78041 -16.53480 -16.40924 -16.01659 -15.75901 -15.29200 -15.24643 -14.78437 -14.65259 -14.44286 -14.23742 -14.16123 -14.08214 -13.66507 -13.56283 -13.22044 -13.08948 -12.85200 -12.74753 -12.44552 -12.20871 -11.92092 -11.77666 -11.63710 -11.45130 -11.43478 -11.29172 -11.13597 -10.85013 -10.57463 -10.54668 -10.49029 -10.14454 -9.10074 -8.17750 -6.31408 0.08412 0.13812 1.42666 1.43849 1.57217 1.69581 2.23599 2.42045 2.46599 2.88270 3.15307 3.34367 3.57627 3.78382 3.91762 3.94337 3.99262 4.05863 4.09822 4.15845 4.26906 4.36515 4.47044 4.49736 4.55784 4.59021 4.60209 4.64371 4.73787 4.77949 4.80742 4.91250 4.99911 5.05736 5.08579 5.19778 5.23930 5.32365 5.36476 5.41466 5.51131 5.52160 5.64402 5.76568 5.86340 6.14527 6.18457 6.54447 6.87239 6.97147 7.30071 7.38747 8.95029 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002073 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.766145 B =13503.458507 C =13997.141207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.715 5.715 14 C 0.162 3.838 15 C -0.036 4.036 16 C -0.181 4.181 17 C 0.123 3.877 18 N -0.533 5.533 19 C 0.299 3.701 20 N -0.483 5.483 21 C 0.057 3.943 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.118 4.118 25 C 0.072 3.928 26 C -0.174 4.174 27 H 0.263 0.737 28 H -0.017 1.017 29 H -0.016 1.016 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.414 0.586 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.153 0.847 36 H 0.185 0.815 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.040 0.960 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 -29.873 -4.612 32.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.304 3.696 12 O -0.465 6.465 13 N -0.368 5.368 14 C 0.039 3.961 15 C -0.045 4.045 16 C -0.202 4.202 17 C -0.034 4.034 18 N -0.248 5.248 19 C 0.068 3.932 20 N -0.201 5.201 21 C -0.068 4.068 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.055 4.055 26 C -0.197 4.197 27 H 0.071 0.929 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.251 0.749 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.202 0.798 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.716 -30.157 -4.950 33.100 hybrid contribution -0.736 1.215 0.488 1.502 sum 11.980 -28.942 -4.463 31.640 Atomic orbital electron populations 1.70182 1.08250 1.27719 1.51558 1.26140 0.95754 1.03938 0.94720 0.85272 0.79276 0.78138 0.77548 1.17691 1.20633 1.20630 1.21749 0.93992 0.91643 1.50593 0.90664 1.18700 0.93719 0.92384 0.94829 1.21641 0.99352 0.90062 1.04871 1.21299 0.87775 0.86489 0.74060 1.90665 1.16532 1.88270 1.51033 1.45901 1.10855 1.04164 1.75896 1.20132 0.92607 0.80190 1.03193 1.20024 0.95685 0.95263 0.93495 1.22180 1.00060 0.99000 0.99001 1.22990 0.92251 0.92322 0.95813 1.67658 1.28123 1.30554 0.98513 1.19993 0.91269 0.92917 0.89037 1.59122 1.16507 1.32802 1.11648 1.22352 0.90895 0.99783 0.93797 1.21634 0.99896 0.98910 0.94908 1.21617 0.96415 0.97593 1.00325 1.21671 0.98206 1.01284 0.94430 1.21933 0.94958 0.90746 0.97833 1.21543 1.00449 0.98253 0.99458 0.92864 0.99846 0.99750 0.87716 0.87860 0.74937 0.91088 0.90472 0.82919 0.79849 0.94002 0.89682 0.91110 0.89426 0.90230 0.91923 0.91518 0.89815 0.90846 0.94125 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.01 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 4 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.12 -4.77 5.64 29.85 0.17 -4.60 16 11 C 0.52 19.56 7.83 87.66 0.69 20.25 16 12 O -0.59 -28.24 15.98 -3.04 -0.05 -28.29 16 13 N -0.71 -18.96 5.55 -466.78 -2.59 -21.55 16 14 C 0.16 3.80 5.85 85.63 0.50 4.30 16 15 C -0.04 -0.69 5.28 -19.70 -0.10 -0.79 16 16 C -0.18 -2.95 9.81 22.37 0.22 -2.73 16 17 C 0.12 1.98 11.17 84.62 0.95 2.93 16 18 N -0.53 -10.72 8.68 -193.25 -1.68 -12.40 16 19 C 0.30 6.06 6.41 133.06 0.85 6.92 16 20 N -0.48 -8.67 4.68 -701.99 -3.28 -11.95 16 21 C 0.06 0.82 5.24 86.32 0.45 1.27 16 22 C -0.12 -1.25 6.09 30.65 0.19 -1.06 16 23 C -0.12 -1.18 6.00 30.67 0.18 -1.00 16 24 C -0.12 -1.37 6.09 30.64 0.19 -1.18 16 25 C 0.07 1.16 4.65 86.33 0.40 1.56 16 26 C -0.17 -3.40 8.88 22.50 0.20 -3.20 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 29 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 30 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.41 8.69 8.46 -92.70 -0.78 7.91 16 33 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 1.19 6.66 -2.38 -0.02 1.18 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 1.35 7.71 -2.39 -0.02 1.33 16 46 H 0.04 0.70 8.11 -2.39 -0.02 0.68 16 47 H 0.14 2.58 7.13 -2.91 -0.02 2.56 16 Total: -1.00 -77.08 382.73 0.58 -76.50 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.17 Total: 16.05 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.70 Total: -5.60 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -7.27 Total: -105.15 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.05 Total: -28.29 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -77.08 0.58 -76.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292364743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.336 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds