Wall clock time and date at job start Tue Mar 31 2020 11:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38279 * 119.92779 * 2 1 4 4 C 1.38118 * 120.06945 * 179.97438 * 3 2 1 5 5 C 1.38879 * 119.92709 * 359.97438 * 4 3 2 6 6 N 1.39884 * 120.07264 * 180.02562 * 5 4 3 7 7 C 1.37499 * 120.00186 * 139.19557 * 6 5 4 8 8 O 1.35112 * 120.00106 * 353.97559 * 7 6 5 9 9 N 1.30093 * 120.00115 * 173.97348 * 7 6 5 10 10 C 1.46500 * 120.00150 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47097 * 114.99999 * 10 9 7 12 12 C 1.53045 * 109.46015 * 175.00027 * 11 10 9 13 13 C 1.53197 * 109.31150 * 181.38644 * 12 11 10 14 14 N 1.46922 * 108.89309 * 305.29389 * 13 12 11 15 15 C 1.36943 * 120.62933 * 233.67543 * 14 13 12 16 16 H 1.07994 * 119.99877 * 29.88158 * 15 14 13 17 17 C 1.38809 * 119.99650 * 209.88153 * 15 14 13 18 18 N 1.31616 * 120.00602 * 19.15874 * 17 15 14 19 19 Si 1.86810 * 119.99743 * 199.15867 * 17 15 14 20 20 H 1.48499 * 109.46828 * 59.99963 * 19 17 15 21 21 H 1.48500 * 109.46987 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46981 * 300.00077 * 19 17 15 23 23 C 1.47205 * 118.55688 * 53.53744 * 14 13 12 24 24 C 1.53039 * 109.46286 * 295.06619 * 11 10 9 25 25 C 1.38886 * 119.85831 * 0.27327 * 5 4 3 26 26 C 1.38112 * 119.92776 * 359.46963 * 25 5 4 27 27 H 1.09000 * 109.46896 * 90.00037 * 1 2 3 28 28 H 1.08999 * 109.47600 * 209.99846 * 1 2 3 29 29 H 1.08993 * 109.46809 * 330.00597 * 1 2 3 30 30 H 1.07993 * 119.96705 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.03381 * 180.02562 * 4 3 2 32 32 H 0.96999 * 119.99151 * 319.19826 * 6 5 4 33 33 H 0.96701 * 113.99995 * 355.28123 * 8 7 6 34 34 H 1.09000 * 109.47264 * 355.00349 * 10 9 7 35 35 H 1.08996 * 109.47235 * 234.99901 * 10 9 7 36 36 H 1.08999 * 109.45283 * 55.03701 * 11 10 9 37 37 H 1.08997 * 109.49952 * 61.43630 * 12 11 10 38 38 H 1.09002 * 109.49826 * 301.33515 * 12 11 10 39 39 H 1.08997 * 109.58472 * 65.15226 * 13 12 11 40 40 H 1.09005 * 109.58486 * 185.43589 * 13 12 11 41 41 H 0.96997 * 120.00323 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.53770 * 186.66817 * 23 14 13 43 43 H 1.09004 * 109.67459 * 66.37106 * 23 14 13 44 44 H 1.08995 * 109.50188 * 298.57048 * 24 11 10 45 45 H 1.09009 * 109.49671 * 58.63096 * 24 11 10 46 46 H 1.08008 * 120.03821 * 179.73049 * 25 5 4 47 47 H 1.07995 * 119.96726 * 180.25869 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 -0.0001 0.0016 6 7 5.6728 -0.0002 0.0027 7 6 6.3597 -0.9012 0.7818 8 8 5.6890 -1.7038 1.6371 9 7 7.6552 -0.9810 0.6953 10 6 8.3871 -1.9406 1.5258 11 6 9.0489 -2.9896 0.6300 12 6 9.9144 -3.9178 1.4855 13 6 10.6025 -4.9451 0.5811 14 7 9.5804 -5.6400 -0.2133 15 6 9.5089 -7.0075 -0.2155 16 1 9.8194 -7.5659 0.6552 17 6 9.0374 -7.6760 -1.3370 18 7 9.0157 -7.0687 -2.5045 19 14 8.4336 -9.4376 -1.1891 20 1 7.2976 -9.4930 -0.2343 21 1 7.9851 -9.9205 -2.5199 22 1 9.5376 -10.2994 -0.6955 23 6 8.6346 -4.8342 -1.0027 24 6 7.9686 -3.8081 -0.0806 25 6 3.5780 -1.2020 -0.0036 26 6 2.1969 -1.1985 0.0012 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6553 2.1327 -0.0004 31 1 4.1163 2.1381 0.0010 32 1 6.1581 0.6355 -0.5462 33 1 4.7402 -1.5231 1.6841 34 1 7.6948 -2.4315 2.2096 35 1 9.1526 -1.4164 2.0979 36 1 9.6738 -2.4917 -0.1115 37 1 9.2863 -4.4347 2.2109 38 1 10.6690 -3.3311 2.0095 39 1 11.2996 -4.4367 -0.0849 40 1 11.1428 -5.6672 1.1934 41 1 8.6865 -7.5360 -3.2882 42 1 7.8744 -5.4845 -1.4354 43 1 9.1692 -4.3168 -1.7994 44 1 7.3587 -4.3261 0.6596 45 1 7.3377 -3.1433 -0.6708 46 1 4.1162 -2.1384 -0.0072 47 1 1.6551 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331021959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:08 Heat of formation + Delta-G solvation = 21.073382 kcal Electronic energy + Delta-G solvation = -26344.081629 eV Core-core repulsion = 22720.368470 eV Total energy + Delta-G solvation = -3623.713159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72977 -38.83708 -37.56252 -35.46292 -34.60800 -32.83088 -31.60083 -31.36698 -30.22251 -29.66997 -27.17767 -25.89157 -23.92271 -23.34686 -22.00234 -21.80316 -21.30483 -20.44924 -19.04392 -18.65902 -17.92281 -16.60338 -15.92800 -15.81711 -15.40198 -14.88344 -14.60203 -14.18217 -14.14767 -14.02705 -13.80708 -13.69481 -13.46833 -13.33732 -12.92903 -12.80709 -12.53841 -12.48486 -12.14563 -11.87955 -11.66301 -11.54643 -11.22929 -10.96722 -10.81811 -10.62884 -10.40148 -10.11264 -10.09762 -9.79731 -9.43068 -9.38664 -9.32338 -9.24809 -8.97000 -8.36391 -7.86714 -6.52262 -5.69603 -3.11364 0.83246 0.94489 2.61260 2.72610 3.31501 3.43558 3.48727 3.50759 3.86548 4.42350 4.49547 4.57891 4.59660 4.86105 4.97483 5.06681 5.19663 5.24623 5.31654 5.45263 5.54716 5.57737 5.62143 5.62397 5.78957 5.85491 5.87165 5.92337 6.09643 6.15976 6.21216 6.21951 6.37099 6.42932 6.52674 6.59405 6.71670 6.80815 6.88272 6.99332 7.03423 7.09479 7.18200 7.50165 7.66443 7.74725 7.89242 8.28058 8.56166 9.31334 9.95874 10.56111 11.39003 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.002962 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.218621 B = 9452.268864 C =10882.754064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.090 4.090 4 C -0.140 4.140 5 C 0.150 3.850 6 N -0.674 5.674 7 C 0.546 3.454 8 O -0.507 6.507 9 N -0.578 5.578 10 C 0.076 3.924 11 C -0.072 4.072 12 C -0.126 4.126 13 C 0.147 3.853 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.899 3.101 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.176 3.824 24 C -0.126 4.126 25 C -0.168 4.168 26 C -0.084 4.084 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.427 0.573 33 H 0.392 0.608 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.016 0.984 40 H 0.051 0.949 41 H 0.253 0.747 42 H 0.075 0.925 43 H 0.016 0.984 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.136 0.864 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.119 19.041 6.506 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.161 4.161 5 C 0.054 3.946 6 N -0.317 5.317 7 C 0.233 3.767 8 O -0.303 6.303 9 N -0.323 5.323 10 C -0.054 4.054 11 C -0.091 4.091 12 C -0.166 4.166 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.728 3.272 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.050 3.950 24 C -0.165 4.165 25 C -0.189 4.189 26 C -0.103 4.103 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.267 0.733 33 H 0.249 0.751 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.034 0.966 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.154 0.846 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.019 18.817 6.250 24.874 hybrid contribution -1.099 -0.934 0.130 1.448 sum -16.118 17.883 6.380 24.906 Atomic orbital electron populations 1.20777 0.90941 1.02855 1.02441 1.19955 0.96386 0.93039 1.01467 1.20914 0.93293 0.97828 0.98845 1.20979 0.94401 0.96756 1.03966 1.17742 0.82435 0.94089 1.00319 1.41919 1.02897 1.38684 1.48247 1.20701 0.87900 0.83963 0.84169 1.85248 1.27119 1.57283 1.60630 1.72617 0.99630 1.28720 1.31376 1.21804 0.96433 0.92449 0.94697 1.21044 0.97010 0.93981 0.97058 1.22029 0.98487 0.97643 0.98426 1.20880 0.90965 0.93286 0.92858 1.44079 1.31653 1.02132 1.53629 1.19104 1.40437 0.81759 0.96899 0.91982 1.25058 1.02236 0.97581 0.94687 1.70067 1.48995 1.37330 0.98009 0.86429 0.79118 0.85003 0.76600 1.21107 1.21695 1.20879 1.20699 0.92555 0.91082 0.90684 1.22095 0.97098 0.97854 0.99435 1.21316 0.95095 0.97339 1.05195 1.20963 0.93213 0.98047 0.98060 0.91126 0.91427 0.91560 0.85488 0.85283 0.73293 0.75061 0.93315 0.91487 0.91526 0.92592 0.93281 0.96623 0.93016 0.93731 0.90682 0.96569 0.93334 0.93967 0.84631 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.11 -0.75 5.88 -104.59 -0.62 -1.37 16 3 C -0.09 -0.60 9.69 -39.61 -0.38 -0.99 16 4 C -0.14 -1.04 9.97 -39.39 -0.39 -1.43 16 5 C 0.15 1.38 5.86 -83.71 -0.49 0.89 16 6 N -0.67 -7.13 5.43 -11.80 -0.06 -7.20 16 7 C 0.55 7.55 8.24 -88.42 -0.73 6.83 16 8 O -0.51 -6.77 11.25 -17.04 -0.19 -6.97 16 9 N -0.58 -9.40 10.06 -62.48 -0.63 -10.03 16 10 C 0.08 1.29 5.72 -4.04 -0.02 1.27 16 11 C -0.07 -1.38 2.36 -90.58 -0.21 -1.60 16 12 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 13 C 0.15 3.33 6.50 -3.71 -0.02 3.31 16 14 N -0.59 -15.88 2.99 -172.10 -0.51 -16.39 16 15 C -0.25 -7.29 9.55 -15.06 -0.14 -7.43 16 16 H 0.06 1.76 7.90 -52.49 -0.41 1.34 16 17 C 0.00 0.09 4.84 -17.43 -0.08 0.01 16 18 N -0.90 -27.32 11.50 55.49 0.64 -26.68 16 19 Si 0.90 22.41 29.60 -169.99 -5.03 17.38 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.18 4.53 5.32 -3.56 -0.02 4.51 16 24 C -0.13 -2.70 5.26 -26.61 -0.14 -2.84 16 25 C -0.17 -1.56 7.56 -39.39 -0.30 -1.85 16 26 C -0.08 -0.66 9.69 -39.61 -0.38 -1.04 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.43 4.03 8.94 -40.82 -0.36 3.67 16 33 H 0.39 3.93 5.48 45.56 0.25 4.18 16 34 H 0.05 0.85 6.74 -51.93 -0.35 0.50 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.07 2.14 6.30 -51.93 -0.33 1.81 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.88 7.54 -51.92 -0.39 0.49 16 46 H 0.14 1.40 6.89 -52.48 -0.36 1.04 16 47 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -33.27 375.49 -10.85 -44.13 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.00 Total: 4.61 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.72 Total: -4.51 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.57 Total: -60.30 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.19 Total: -6.97 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.27 -10.85 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331021959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.200 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds