Wall clock time and date at job start Tue Mar 31 2020 11:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 119.99754 * 2 1 4 4 C 1.38214 * 119.99753 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.00032 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00172 * 359.74077 * 5 4 3 7 7 C 1.38212 * 120.00415 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99506 * 0.02562 * 7 2 1 9 9 N 1.46894 * 109.47272 * 79.99972 * 8 7 2 10 10 C 1.46902 * 111.00008 * 169.99627 * 9 8 7 11 11 C 1.53240 * 109.33975 * 172.74168 * 10 9 8 12 12 N 1.47084 * 108.51823 * 53.83493 * 11 10 9 13 13 C 1.37339 * 120.88212 * 128.83785 * 12 11 10 14 14 O 1.35090 * 119.99986 * 359.97438 * 13 12 11 15 15 N 1.30096 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99554 * 185.25610 * 15 13 12 17 17 C 1.50708 * 109.46859 * 115.33743 * 16 15 13 18 18 H 1.07992 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99746 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99868 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99855 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47163 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46688 * 120.00312 * 21 19 17 24 24 H 1.48501 * 109.47127 * 239.99827 * 21 19 17 25 25 C 1.47084 * 118.23559 * 308.81099 * 12 11 10 26 26 C 1.46900 * 111.00379 * 45.69374 * 9 8 7 27 27 H 1.08997 * 109.47285 * 270.02506 * 1 2 3 28 28 H 1.09001 * 109.47138 * 30.02372 * 1 2 3 29 29 H 1.09005 * 109.46967 * 150.02712 * 1 2 3 30 30 H 1.07991 * 119.99819 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.99843 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.00074 * 180.02562 * 5 4 3 33 33 H 1.08007 * 119.99930 * 180.27491 * 6 5 4 34 34 H 1.08994 * 109.47158 * 319.99416 * 8 7 2 35 35 H 1.09009 * 109.46467 * 199.99623 * 8 7 2 36 36 H 1.09001 * 109.49384 * 52.78588 * 10 9 8 37 37 H 1.09002 * 109.51552 * 292.71938 * 10 9 8 38 38 H 1.09001 * 109.62958 * 173.53786 * 11 10 9 39 39 H 1.08999 * 109.63113 * 294.12353 * 11 10 9 40 40 H 0.96701 * 114.00464 * 84.99535 * 14 13 12 41 41 H 1.09000 * 109.46906 * 235.33087 * 16 15 13 42 42 H 1.08993 * 109.47309 * 355.33636 * 16 15 13 43 43 H 0.96998 * 119.99561 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.62701 * 291.47577 * 25 12 11 45 45 H 1.08991 * 109.78826 * 170.99372 * 25 12 11 46 46 H 1.09000 * 109.49176 * 307.21962 * 26 9 8 47 47 H 1.09005 * 109.48775 * 67.29311 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1968 0.0054 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 7 0.9920 -2.8061 -1.3635 10 6 0.4638 -4.1742 -1.4501 11 6 -0.1608 -4.3904 -2.8326 12 7 0.8372 -4.0431 -3.8557 13 6 1.1310 -4.9123 -4.8776 14 8 0.5006 -6.1048 -4.9523 15 7 2.0164 -4.5873 -5.7736 16 6 2.2471 -5.4618 -6.9263 17 6 1.8478 -4.7435 -8.1896 18 1 1.4606 -3.7367 -8.1388 19 6 1.9769 -5.3719 -9.4100 20 7 2.4490 -6.5979 -9.4717 21 14 1.4813 -4.4819 -10.9758 22 1 0.9847 -3.1240 -10.6373 23 1 2.6583 -4.3684 -11.8743 24 1 0.4076 -5.2457 -11.6606 25 6 1.5118 -2.7399 -3.7557 26 6 2.0705 -2.5887 -2.3369 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1327 0.0010 32 1 5.3517 0.0002 0.0014 33 1 4.1207 -2.1321 0.0099 34 1 0.5810 -2.4229 0.6608 35 1 2.0993 -3.2994 0.3524 36 1 -0.2948 -4.3206 -0.6813 37 1 1.2745 -4.8876 -1.3016 38 1 -0.4510 -5.4351 -2.9440 39 1 -1.0363 -3.7505 -2.9430 40 1 -0.3547 -6.0701 -5.4023 41 1 3.3036 -5.7253 -6.9767 42 1 1.6512 -6.3681 -6.8198 43 1 2.5395 -7.0400 -10.3303 44 1 0.7970 -1.9413 -3.9548 45 1 2.3269 -2.6900 -4.4774 46 1 2.4771 -1.5852 -2.2110 47 1 2.8591 -3.3238 -2.1762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331145941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:32 Heat of formation + Delta-G solvation = 25.000842 kcal Electronic energy + Delta-G solvation = -26546.890745 eV Core-core repulsion = 22923.347893 eV Total energy + Delta-G solvation = -3623.542851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21065 -39.02114 -37.57053 -34.77709 -33.64052 -32.91443 -32.13890 -31.31696 -30.81814 -28.21546 -27.11224 -26.37241 -24.40864 -23.64298 -22.52150 -22.13924 -20.83519 -20.38654 -19.16702 -17.69102 -16.58450 -16.16926 -15.86955 -15.64387 -15.49329 -15.24575 -15.12586 -14.75386 -14.36604 -14.28603 -13.88331 -13.63156 -13.46874 -13.32035 -12.94651 -12.48347 -12.38154 -12.29721 -12.09185 -11.96455 -11.88456 -11.34761 -11.20607 -11.17588 -11.14322 -10.94965 -10.81599 -10.67667 -10.59953 -10.11088 -9.97262 -9.19884 -8.99715 -8.79285 -8.58927 -8.38990 -8.05425 -7.07108 -5.97227 -4.01197 1.13606 1.21725 3.10197 3.31987 3.38576 3.42367 3.46861 3.50755 3.96812 4.47581 4.50240 4.63290 4.77341 4.83881 4.86294 4.99272 5.06375 5.16928 5.19426 5.24287 5.33243 5.36137 5.42218 5.46497 5.50648 5.53343 5.56148 5.68931 5.73833 5.75724 5.87276 5.92110 6.04957 6.09550 6.22945 6.28931 6.33713 6.48378 6.49817 6.81533 6.89311 6.96136 7.25977 7.49116 7.66009 7.78159 8.00643 8.27192 8.47121 9.01821 9.36460 9.66124 11.11172 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002764 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.049753 B =10127.825586 C =10838.416385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.085 4.085 8 C 0.094 3.906 9 N -0.529 5.529 10 C 0.042 3.958 11 C 0.132 3.868 12 N -0.617 5.617 13 C 0.508 3.492 14 O -0.527 6.527 15 N -0.567 5.567 16 C 0.195 3.805 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.147 3.853 26 C 0.039 3.961 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.390 0.610 41 H 0.034 0.966 42 H 0.010 0.990 43 H 0.261 0.739 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 11.912 23.891 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.128 4.128 7 C -0.085 4.085 8 C -0.033 4.033 9 N -0.254 5.254 10 C -0.087 4.087 11 C 0.008 3.992 12 N -0.350 5.350 13 C 0.194 3.806 14 O -0.328 6.328 15 N -0.306 5.306 16 C 0.067 3.933 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.211 1.211 25 C 0.023 3.977 26 C -0.089 4.089 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.246 0.754 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.716 12.365 23.687 26.977 hybrid contribution -0.301 -0.766 -0.977 1.277 sum -4.017 11.599 22.710 25.815 Atomic orbital electron populations 1.20893 0.90977 1.04013 1.01877 1.19766 0.96313 0.92182 0.97990 1.21057 0.94246 0.97539 1.01403 1.21132 0.94367 0.98002 0.99994 1.21088 0.99851 0.92460 1.01108 1.21086 0.93610 0.98221 0.99919 1.19606 0.93305 0.94459 1.01163 1.21058 0.98163 0.93095 0.90996 1.62092 1.34572 1.24881 1.03837 1.22521 0.99346 0.88602 0.98250 1.21439 0.90899 1.01091 0.85815 1.46220 1.44464 1.16963 1.27365 1.20255 0.91292 0.80371 0.88703 1.84806 1.38355 1.29305 1.80383 1.72273 1.19626 1.33542 1.05184 1.19490 0.97016 0.91109 0.85668 1.21211 1.42134 1.00767 0.90372 0.92268 1.25001 0.95538 0.94989 0.99112 1.69985 1.46156 1.12270 1.25255 0.86429 0.78150 0.79758 0.83020 1.19726 1.20924 1.21068 1.21431 0.97745 0.83244 0.95236 1.22648 0.92217 1.01525 0.92526 0.91765 0.91900 0.89388 0.86208 0.86265 0.86192 0.86377 0.89787 0.94219 0.90076 0.94362 0.89714 0.91747 0.75385 0.94834 0.97181 0.92970 0.92213 0.87883 0.89567 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.26 36.00 0.33 -0.63 16 2 C -0.06 -0.58 5.88 -104.62 -0.62 -1.20 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 4 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 5 C -0.13 -1.15 10.05 -39.59 -0.40 -1.55 16 6 C -0.11 -1.06 8.63 -39.59 -0.34 -1.40 16 7 C -0.08 -0.83 3.67 -104.63 -0.38 -1.21 16 8 C 0.09 0.86 4.53 -4.98 -0.02 0.84 16 9 N -0.53 -5.65 4.11 -235.76 -0.97 -6.62 16 10 C 0.04 0.44 5.58 -3.70 -0.02 0.42 16 11 C 0.13 1.60 6.64 -3.60 -0.02 1.57 16 12 N -0.62 -9.94 3.08 -175.06 -0.54 -10.48 16 13 C 0.51 10.34 8.36 -88.57 -0.74 9.60 16 14 O -0.53 -10.02 10.71 -16.97 -0.18 -10.20 16 15 N -0.57 -13.90 9.15 -63.70 -0.58 -14.48 16 16 C 0.19 5.52 6.09 -5.19 -0.03 5.49 16 17 C -0.51 -15.05 9.39 -34.44 -0.32 -15.38 16 18 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 21 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.15 2.23 6.61 -3.60 -0.02 2.21 16 26 C 0.04 0.50 5.00 -3.70 -0.02 0.48 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.09 0.77 6.35 -51.93 -0.33 0.44 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 1.06 8.04 -52.48 -0.42 0.64 16 34 H 0.08 0.68 7.28 -51.93 -0.38 0.30 16 35 H 0.04 0.37 7.94 -51.92 -0.41 -0.04 16 36 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.99 7.03 -51.93 -0.37 0.62 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 5.96 9.06 45.56 0.41 6.38 16 41 H 0.03 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.01 0.30 6.73 -51.93 -0.35 -0.05 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.10 1.83 6.98 -51.93 -0.36 1.47 16 46 H 0.09 1.08 5.94 -51.93 -0.31 0.77 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -33.87 376.79 -11.08 -44.95 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.71 Total: 2.86 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.49 Total: -2.15 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -1.36 Total: -58.32 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.18 Total: -10.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.87 -11.08 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331145941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.948 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds