Wall clock time and date at job start Tue Mar 31 2020 11:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 119.99754 * 2 1 4 4 C 1.38214 * 119.99753 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.00032 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00172 * 359.74077 * 5 4 3 7 7 C 1.38212 * 120.00415 * 179.97438 * 2 1 3 8 8 C 1.50700 * 119.99506 * 0.02562 * 7 2 1 9 9 N 1.46894 * 109.47272 * 79.99972 * 8 7 2 10 10 C 1.46902 * 111.00008 * 169.99627 * 9 8 7 11 11 C 1.53240 * 109.33975 * 172.74168 * 10 9 8 12 12 N 1.47084 * 108.51823 * 53.83493 * 11 10 9 13 13 C 1.37339 * 120.88212 * 128.83785 * 12 11 10 14 14 O 1.35090 * 119.99986 * 359.97438 * 13 12 11 15 15 N 1.30096 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99554 * 185.25610 * 15 13 12 17 17 C 1.50708 * 109.46859 * 115.33743 * 16 15 13 18 18 H 1.07992 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99746 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99868 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99855 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47163 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46688 * 120.00312 * 21 19 17 24 24 H 1.48501 * 109.47127 * 239.99827 * 21 19 17 25 25 C 1.47084 * 118.23559 * 308.81099 * 12 11 10 26 26 C 1.46900 * 111.00379 * 45.69374 * 9 8 7 27 27 H 1.08997 * 109.47285 * 270.02506 * 1 2 3 28 28 H 1.09001 * 109.47138 * 30.02372 * 1 2 3 29 29 H 1.09005 * 109.46967 * 150.02712 * 1 2 3 30 30 H 1.07991 * 119.99819 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.99843 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.00074 * 180.02562 * 5 4 3 33 33 H 1.08007 * 119.99930 * 180.27491 * 6 5 4 34 34 H 1.08994 * 109.47158 * 319.99416 * 8 7 2 35 35 H 1.09009 * 109.46467 * 199.99623 * 8 7 2 36 36 H 1.09001 * 109.49384 * 52.78588 * 10 9 8 37 37 H 1.09002 * 109.51552 * 292.71938 * 10 9 8 38 38 H 1.09001 * 109.62958 * 173.53786 * 11 10 9 39 39 H 1.08999 * 109.63113 * 294.12353 * 11 10 9 40 40 H 0.96701 * 114.00464 * 84.99535 * 14 13 12 41 41 H 1.09000 * 109.46906 * 235.33087 * 16 15 13 42 42 H 1.08993 * 109.47309 * 355.33636 * 16 15 13 43 43 H 0.96998 * 119.99561 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.62701 * 291.47577 * 25 12 11 45 45 H 1.08991 * 109.78826 * 170.99372 * 25 12 11 46 46 H 1.09000 * 109.49176 * 307.21962 * 26 9 8 47 47 H 1.09005 * 109.48775 * 67.29311 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1968 0.0054 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 7 0.9920 -2.8061 -1.3635 10 6 0.4638 -4.1742 -1.4501 11 6 -0.1608 -4.3904 -2.8326 12 7 0.8372 -4.0431 -3.8557 13 6 1.1310 -4.9123 -4.8776 14 8 0.5006 -6.1048 -4.9523 15 7 2.0164 -4.5873 -5.7736 16 6 2.2471 -5.4618 -6.9263 17 6 1.8478 -4.7435 -8.1896 18 1 1.4606 -3.7367 -8.1388 19 6 1.9769 -5.3719 -9.4100 20 7 2.4490 -6.5979 -9.4717 21 14 1.4813 -4.4819 -10.9758 22 1 0.9847 -3.1240 -10.6373 23 1 2.6583 -4.3684 -11.8743 24 1 0.4076 -5.2457 -11.6606 25 6 1.5118 -2.7399 -3.7557 26 6 2.0705 -2.5887 -2.3369 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1327 0.0010 32 1 5.3517 0.0002 0.0014 33 1 4.1207 -2.1321 0.0099 34 1 0.5810 -2.4229 0.6608 35 1 2.0993 -3.2994 0.3524 36 1 -0.2948 -4.3206 -0.6813 37 1 1.2745 -4.8876 -1.3016 38 1 -0.4510 -5.4351 -2.9440 39 1 -1.0363 -3.7505 -2.9430 40 1 -0.3547 -6.0701 -5.4023 41 1 3.3036 -5.7253 -6.9767 42 1 1.6512 -6.3681 -6.8198 43 1 2.5395 -7.0400 -10.3303 44 1 0.7970 -1.9413 -3.9548 45 1 2.3269 -2.6900 -4.4774 46 1 2.4771 -1.5852 -2.2110 47 1 2.8591 -3.3238 -2.1762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331145941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:31 Heat of formation + Delta-G solvation = 0.414672 kcal Electronic energy + Delta-G solvation = -26547.956881 eV Core-core repulsion = 22923.347893 eV Total energy + Delta-G solvation = -3624.608987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07372 -40.25443 -38.79197 -35.94113 -35.66102 -34.00134 -33.52030 -32.41420 -31.85877 -29.63163 -28.28302 -27.50540 -25.58318 -24.80357 -24.20461 -22.83298 -22.04949 -21.35795 -20.52225 -19.10261 -18.39345 -17.39253 -17.10978 -16.87000 -16.57715 -16.33169 -16.22895 -16.11804 -15.62447 -15.22618 -15.19306 -14.71673 -14.48255 -14.31464 -13.99461 -13.95026 -13.72157 -13.28611 -13.11526 -12.95683 -12.87629 -12.75935 -12.68524 -12.56149 -12.32564 -12.24109 -12.16463 -11.92693 -11.79754 -11.77689 -11.56578 -11.05196 -10.73786 -10.02570 -9.71393 -9.50985 -9.27835 -8.70259 -8.17019 -6.35846 0.44283 0.53188 1.37075 1.39596 1.51282 1.59203 1.95857 2.40144 2.73052 3.07632 3.12803 3.48963 3.76852 3.88114 3.96537 4.09971 4.13189 4.23958 4.24857 4.29650 4.38784 4.46976 4.51938 4.56124 4.67704 4.73983 4.79917 4.82898 4.91033 4.92950 4.96320 5.01778 5.08379 5.13239 5.21563 5.22127 5.37324 5.48167 5.59791 5.66405 5.67878 5.79959 5.92258 6.02680 6.04131 6.11505 6.18670 6.33024 6.73611 6.82877 7.29246 7.69125 8.87868 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.002764 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.049753 B =10127.825586 C =10838.416385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.134 4.134 4 C -0.123 4.123 5 C -0.139 4.139 6 C -0.124 4.124 7 C -0.097 4.097 8 C 0.098 3.902 9 N -0.524 5.524 10 C 0.046 3.954 11 C 0.127 3.873 12 N -0.609 5.609 13 C 0.531 3.469 14 O -0.534 6.534 15 N -0.616 5.616 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.052 0.948 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.976 3.024 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.271 1.271 25 C 0.145 3.855 26 C 0.057 3.943 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.116 0.884 37 H 0.024 0.976 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.409 0.591 41 H -0.009 1.009 42 H -0.011 1.011 43 H 0.267 0.733 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 13.404 25.023 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.157 4.157 6 C -0.142 4.142 7 C -0.098 4.098 8 C -0.028 4.028 9 N -0.249 5.249 10 C -0.083 4.083 11 C 0.004 3.996 12 N -0.340 5.340 13 C 0.216 3.784 14 O -0.337 6.337 15 N -0.358 5.358 16 C 0.087 3.913 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.197 1.197 25 C 0.022 3.978 26 C -0.072 4.072 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.134 0.866 37 H 0.042 0.958 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.269 0.731 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.763 13.868 24.888 29.068 hybrid contribution 0.267 -1.221 -1.137 1.690 sum -5.496 12.647 23.750 27.463 Atomic orbital electron populations 1.20878 0.89873 1.03905 1.02671 1.20017 0.97231 0.92191 0.97749 1.21339 0.94532 0.98195 1.01083 1.21418 0.94666 0.98625 0.99372 1.21324 1.00666 0.92561 1.01130 1.21225 0.94003 0.98549 1.00437 1.19706 0.93355 0.94889 1.01804 1.21085 0.98882 0.92860 0.90013 1.62105 1.33481 1.24981 1.04325 1.22539 0.99708 0.88002 0.98006 1.21788 0.90430 1.02065 0.85321 1.46539 1.44474 1.16267 1.26758 1.20428 0.89508 0.80254 0.88178 1.84726 1.39614 1.28747 1.80652 1.72217 1.23509 1.33887 1.06177 1.18987 0.93936 0.90851 0.87553 1.21451 1.42867 1.00652 0.91678 0.92953 1.25986 0.94991 0.95745 1.02842 1.70111 1.46678 1.13860 1.26577 0.85242 0.78174 0.78585 0.78011 1.19060 1.20098 1.19655 1.21452 0.97126 0.82984 0.96230 1.22375 0.92156 1.01173 0.91540 0.90476 0.91436 0.90000 0.84607 0.84497 0.85079 0.86469 0.87900 0.94303 0.86574 0.95789 0.89004 0.89692 0.73142 0.99133 0.99319 0.92448 0.91110 0.90940 0.89242 0.96343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.26 71.23 0.66 -0.89 16 2 C -0.07 -1.21 5.88 -19.86 -0.12 -1.32 16 3 C -0.13 -2.14 9.70 22.27 0.22 -1.93 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 5 C -0.14 -2.41 10.05 22.27 0.22 -2.19 16 6 C -0.12 -2.32 8.63 22.27 0.19 -2.12 16 7 C -0.10 -1.75 3.67 -19.87 -0.07 -1.82 16 8 C 0.10 1.60 4.53 85.56 0.39 1.98 16 9 N -0.52 -10.08 4.11 -899.82 -3.70 -13.78 16 10 C 0.05 0.84 5.58 86.38 0.48 1.32 16 11 C 0.13 2.74 6.64 86.35 0.57 3.32 16 12 N -0.61 -19.17 3.08 -818.23 -2.52 -21.69 16 13 C 0.53 21.85 8.36 179.63 1.50 23.35 16 14 O -0.53 -20.24 10.71 -83.65 -0.90 -21.13 16 15 N -0.62 -31.46 9.15 -469.71 -4.30 -35.76 16 16 C 0.22 12.88 6.09 85.63 0.52 13.40 16 17 C -0.53 -32.40 9.39 25.60 0.24 -32.16 16 18 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 19 C 0.00 0.15 5.46 84.65 0.46 0.61 16 20 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 21 Si 0.98 45.82 29.54 68.60 2.03 47.84 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C 0.15 4.39 6.61 86.35 0.57 4.96 16 26 C 0.06 1.40 5.00 86.38 0.43 1.83 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.08 1.19 6.35 -2.38 -0.02 1.18 16 30 H 0.14 1.65 8.06 -2.92 -0.02 1.63 16 31 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.12 2.12 8.04 -2.91 -0.02 2.09 16 34 H 0.10 1.32 7.28 -2.39 -0.02 1.30 16 35 H 0.04 0.65 7.94 -2.38 -0.02 0.63 16 36 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 37 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 1.91 7.03 -2.39 -0.02 1.89 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.41 12.25 9.06 -74.06 -0.67 11.57 16 41 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H -0.01 -0.69 6.73 -2.39 -0.02 -0.70 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.07 2.68 6.98 -2.39 -0.02 2.67 16 46 H 0.09 2.19 5.94 -2.39 -0.01 2.18 16 47 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -75.63 376.79 -2.32 -77.95 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.29 Total: 18.01 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.50 Total: 6.59 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -10.24 Total: -129.26 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.90 Total: -21.13 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.63 -2.32 -77.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331145941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.360 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds