Wall clock time and date at job start Tue Mar 31 2020 11:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48510 * 109.47060 * 270.00245 * 3 2 1 5 5 H 1.48500 * 109.47139 * 29.99676 * 3 2 1 6 6 H 1.48494 * 109.47048 * 150.00214 * 3 2 1 7 7 C 1.37871 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.45997 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.30974 * 181.36977 * 10 9 7 12 12 N 1.46924 * 108.78288 * 305.37248 * 11 10 9 13 13 C 1.34777 * 120.63070 * 233.58565 * 12 11 10 14 14 O 1.21576 * 120.00085 * 7.01345 * 13 12 11 15 15 C 1.47705 * 119.99937 * 187.01528 * 13 12 11 16 16 C 1.41499 * 126.51788 * 187.06335 * 15 13 12 17 17 C 1.35362 * 105.50528 * 180.02562 * 16 15 13 18 18 N 1.35035 * 107.23020 * 0.25805 * 17 16 15 19 19 C 1.46498 * 124.89098 * 179.70767 * 18 17 16 20 20 C 1.54273 * 110.03096 * 32.16483 * 19 18 17 21 21 C 1.54889 * 104.19365 * 217.10985 * 20 19 18 22 22 C 1.54882 * 102.75021 * 37.94154 * 21 20 19 23 23 C 1.53873 * 110.02888 * 275.00241 * 19 18 17 24 24 N 1.28476 * 110.22488 * 359.55180 * 18 17 16 25 25 C 1.46925 * 118.73751 * 53.85788 * 12 11 10 26 26 C 1.53040 * 109.45039 * 300.06578 * 9 7 2 27 27 H 0.97002 * 119.99703 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.45574 * 60.03156 * 9 7 2 29 29 H 1.09003 * 109.49128 * 61.42868 * 10 9 7 30 30 H 1.08991 * 109.52539 * 301.34451 * 10 9 7 31 31 H 1.09004 * 109.58603 * 185.57509 * 11 10 9 32 32 H 1.09009 * 109.70205 * 65.23464 * 11 10 9 33 33 H 1.08005 * 127.24803 * 0.02562 * 16 15 13 34 34 H 1.08008 * 126.39116 * 180.02562 * 17 16 15 35 35 H 1.08997 * 110.02085 * 153.60600 * 19 18 17 36 36 H 1.09001 * 110.48524 * 335.78755 * 20 19 18 37 37 H 1.09000 * 110.48587 * 98.42808 * 20 19 18 38 38 H 1.08996 * 110.75190 * 279.62474 * 21 20 19 39 39 H 1.09003 * 110.75347 * 156.25850 * 21 20 19 40 40 H 1.09005 * 110.48519 * 203.37477 * 22 21 20 41 41 H 1.09006 * 110.60033 * 80.79569 * 22 21 20 42 42 H 1.09000 * 110.03141 * 238.56496 * 23 19 18 43 43 H 1.09003 * 110.03702 * 359.97438 * 23 19 18 44 44 H 1.08999 * 109.58541 * 65.93230 * 25 12 11 45 45 H 1.09001 * 109.58468 * 186.35809 * 25 12 11 46 46 H 1.08996 * 109.49889 * 298.57277 * 26 9 7 47 47 H 1.09000 * 109.49508 * 58.67210 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2457 -3.6622 -0.0018 11 6 1.4766 -4.9866 -0.0364 12 7 0.5231 -5.0092 1.0812 13 6 0.5129 -6.0357 1.9545 14 8 1.3769 -6.8893 1.8994 15 6 -0.5479 -6.1236 2.9785 16 6 -0.6155 -7.0532 4.0432 17 6 -1.7526 -6.7534 4.7137 18 7 -2.3281 -5.7100 4.0785 19 6 -3.5864 -5.0757 4.4792 20 6 -3.7472 -5.1426 6.0121 21 6 -5.2624 -5.3837 6.2248 22 6 -5.6209 -6.3480 5.0671 23 6 -4.7777 -5.8422 3.8784 24 7 -1.6118 -5.3514 3.0741 25 6 -0.4231 -3.8944 1.2252 26 6 0.3706 -2.5793 1.2487 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5567 -0.8906 29 1 2.8563 -3.6196 0.9002 30 1 2.8879 -3.5913 -0.8796 31 1 2.1752 -5.8175 0.0623 32 1 0.9366 -5.0734 -0.9793 33 1 0.0913 -7.8369 4.2726 34 1 -2.1311 -7.2574 5.5907 35 1 -3.6038 -4.0380 4.1462 36 1 -3.1681 -5.9707 6.4206 37 1 -3.4429 -4.2009 6.4690 38 1 -5.8181 -4.4503 6.1363 39 1 -5.4467 -5.8542 7.1907 40 1 -6.6840 -6.2862 4.8345 41 1 -5.3460 -7.3717 5.3215 42 1 -5.3738 -5.1762 3.2545 43 1 -4.4197 -6.6858 3.2884 44 1 -1.1151 -3.8915 0.3830 45 1 -0.9783 -4.0044 2.1567 46 1 0.9985 -2.5466 2.1390 47 1 -0.3220 -1.7376 1.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334166301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:21 Heat of formation + Delta-G solvation = 42.418347 kcal Electronic energy + Delta-G solvation = -27120.766761 eV Core-core repulsion = 23497.979189 eV Total energy + Delta-G solvation = -3622.787571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.69186 -39.32800 -38.26573 -36.60215 -33.46455 -32.53743 -31.33265 -30.56332 -29.84799 -29.20253 -28.02026 -26.15382 -23.85790 -22.52794 -22.33242 -21.79324 -20.95806 -19.89364 -19.69862 -18.47483 -17.50695 -16.68213 -16.36552 -15.99329 -15.46396 -15.33676 -14.93466 -14.50346 -14.26882 -13.98585 -13.56700 -13.42089 -13.04759 -12.83701 -12.66512 -12.61637 -12.39375 -12.23038 -11.91542 -11.63667 -11.61031 -11.53124 -11.36079 -11.22250 -11.04881 -10.91565 -10.62196 -10.36261 -10.25473 -10.00486 -9.64837 -9.40263 -9.14246 -9.07872 -8.95214 -8.70459 -8.30094 -7.84440 -5.96867 -4.02750 1.78745 2.25279 2.40223 3.31324 3.37915 3.42071 3.59762 3.80168 3.90956 4.06485 4.40062 4.45399 4.61514 4.71554 4.83615 4.92628 4.94103 5.00340 5.12017 5.30168 5.32765 5.39977 5.42946 5.59034 5.59341 5.72810 5.75622 5.79951 5.82747 5.90293 6.01558 6.09931 6.24294 6.34256 6.39172 6.56234 6.66837 6.77372 6.93707 7.05148 7.16503 7.28945 7.43960 7.74290 7.96643 8.01322 8.10695 8.16950 8.47865 8.68424 9.00656 9.61614 11.08416 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003547 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.120266 B = 7893.107544 C = 9379.687959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.122 4.122 11 C 0.112 3.888 12 N -0.585 5.585 13 C 0.595 3.405 14 O -0.555 6.555 15 C -0.006 4.006 16 C -0.182 4.182 17 C -0.022 4.022 18 N -0.281 5.281 19 C 0.142 3.858 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.136 4.136 24 N -0.250 5.250 25 C 0.084 3.916 26 C -0.120 4.120 27 H 0.259 0.741 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.159 0.841 34 H 0.176 0.824 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.110 0.890 46 H 0.035 0.965 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 -12.432 12.488 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.316 5.316 13 C 0.381 3.619 14 O -0.433 6.433 15 C -0.166 4.166 16 C -0.210 4.210 17 C -0.165 4.165 18 N -0.068 5.068 19 C 0.041 3.959 20 C -0.175 4.175 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.174 4.174 24 N -0.085 5.085 25 C -0.038 4.038 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.177 0.823 34 H 0.193 0.807 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.127 0.873 46 H 0.054 0.946 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.312 -11.778 11.960 21.424 hybrid contribution 0.806 0.437 0.343 0.979 sum -12.506 -11.341 12.304 20.890 Atomic orbital electron populations 1.69860 1.05815 1.26269 1.51127 1.24957 0.94859 0.98973 0.95214 0.86632 0.79919 0.83620 0.78045 1.20751 1.21315 1.20003 1.21228 0.92925 0.90662 1.50011 0.92757 1.18657 0.92676 0.91608 0.94173 1.21998 0.98895 0.94234 1.00941 1.21734 0.91760 0.99858 0.87665 1.48092 1.35688 1.20771 1.27087 1.17033 0.83118 0.81755 0.80006 1.90717 1.38148 1.41484 1.72912 1.22062 0.96141 0.98061 1.00341 1.21713 0.99413 1.03100 0.96741 1.22642 0.96692 0.94915 1.02215 1.45957 1.17860 1.23320 1.19665 1.22333 0.79347 0.98561 0.95699 1.22840 0.98026 1.03846 0.92751 1.22479 0.94461 1.00081 0.98938 1.22380 1.00004 0.99338 0.94478 1.22590 0.95449 1.00788 0.98590 1.73641 1.04933 1.22446 1.07458 1.22777 0.91347 0.86434 1.03243 1.22059 0.99824 0.94904 0.99087 0.93108 0.95533 0.92935 0.92168 0.90306 0.92116 0.82327 0.80666 0.86810 0.89906 0.89878 0.90654 0.90643 0.90899 0.91259 0.89810 0.90556 0.92586 0.87270 0.94635 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 11.31 55.43 0.63 -24.46 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.18 2.06 -91.73 -0.19 1.00 16 10 C -0.12 -2.67 5.30 -26.61 -0.14 -2.81 16 11 C 0.11 2.22 6.44 -3.71 -0.02 2.20 16 12 N -0.59 -11.95 2.97 -173.66 -0.52 -12.46 16 13 C 0.59 12.05 7.69 -12.39 -0.10 11.96 16 14 O -0.55 -12.23 16.36 5.30 0.09 -12.14 16 15 C -0.01 -0.11 6.82 -82.77 -0.56 -0.68 16 16 C -0.18 -2.58 10.81 -39.37 -0.43 -3.01 16 17 C -0.02 -0.25 10.39 -17.17 -0.18 -0.43 16 18 N -0.28 -3.47 3.14 -53.74 -0.17 -3.64 16 19 C 0.14 1.27 3.88 -66.81 -0.26 1.01 16 20 C -0.14 -0.87 6.35 -25.07 -0.16 -1.03 16 21 C -0.12 -0.59 6.91 -24.74 -0.17 -0.76 16 22 C -0.12 -0.67 6.83 -25.08 -0.17 -0.84 16 23 C -0.14 -1.03 6.59 -25.61 -0.17 -1.20 16 24 N -0.25 -4.04 8.46 33.42 0.28 -3.76 16 25 C 0.08 1.73 6.14 -3.49 -0.02 1.71 16 26 C -0.12 -2.87 5.17 -26.39 -0.14 -3.00 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.53 7.00 -51.93 -0.36 1.16 16 32 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 34 H 0.18 1.25 6.80 -52.48 -0.36 0.89 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.49 5.83 -51.93 -0.30 0.19 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.11 2.14 4.17 -70.02 -0.29 1.85 16 46 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 2.66 6.03 -51.93 -0.31 2.35 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -31.96 366.04 -9.79 -41.75 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.50 Total: 1.55 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.09 Total: -8.66 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.23 Total: -44.32 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.96 -9.79 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334166301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.168 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds