Wall clock time and date at job start Tue Mar 31 2020 11:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48510 * 109.47060 * 270.00245 * 3 2 1 5 5 H 1.48500 * 109.47139 * 29.99676 * 3 2 1 6 6 H 1.48494 * 109.47048 * 150.00214 * 3 2 1 7 7 C 1.37871 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.45997 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.30974 * 181.36977 * 10 9 7 12 12 N 1.46924 * 108.78288 * 305.37248 * 11 10 9 13 13 C 1.34777 * 120.63070 * 233.58565 * 12 11 10 14 14 O 1.21576 * 120.00085 * 7.01345 * 13 12 11 15 15 C 1.47705 * 119.99937 * 187.01528 * 13 12 11 16 16 C 1.41499 * 126.51788 * 187.06335 * 15 13 12 17 17 C 1.35362 * 105.50528 * 180.02562 * 16 15 13 18 18 N 1.35035 * 107.23020 * 0.25805 * 17 16 15 19 19 C 1.46498 * 124.89098 * 179.70767 * 18 17 16 20 20 C 1.54273 * 110.03096 * 32.16483 * 19 18 17 21 21 C 1.54889 * 104.19365 * 217.10985 * 20 19 18 22 22 C 1.54882 * 102.75021 * 37.94154 * 21 20 19 23 23 C 1.53873 * 110.02888 * 275.00241 * 19 18 17 24 24 N 1.28476 * 110.22488 * 359.55180 * 18 17 16 25 25 C 1.46925 * 118.73751 * 53.85788 * 12 11 10 26 26 C 1.53040 * 109.45039 * 300.06578 * 9 7 2 27 27 H 0.97002 * 119.99703 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.45574 * 60.03156 * 9 7 2 29 29 H 1.09003 * 109.49128 * 61.42868 * 10 9 7 30 30 H 1.08991 * 109.52539 * 301.34451 * 10 9 7 31 31 H 1.09004 * 109.58603 * 185.57509 * 11 10 9 32 32 H 1.09009 * 109.70205 * 65.23464 * 11 10 9 33 33 H 1.08005 * 127.24803 * 0.02562 * 16 15 13 34 34 H 1.08008 * 126.39116 * 180.02562 * 17 16 15 35 35 H 1.08997 * 110.02085 * 153.60600 * 19 18 17 36 36 H 1.09001 * 110.48524 * 335.78755 * 20 19 18 37 37 H 1.09000 * 110.48587 * 98.42808 * 20 19 18 38 38 H 1.08996 * 110.75190 * 279.62474 * 21 20 19 39 39 H 1.09003 * 110.75347 * 156.25850 * 21 20 19 40 40 H 1.09005 * 110.48519 * 203.37477 * 22 21 20 41 41 H 1.09006 * 110.60033 * 80.79569 * 22 21 20 42 42 H 1.09000 * 110.03141 * 238.56496 * 23 19 18 43 43 H 1.09003 * 110.03702 * 359.97438 * 23 19 18 44 44 H 1.08999 * 109.58541 * 65.93230 * 25 12 11 45 45 H 1.09001 * 109.58468 * 186.35809 * 25 12 11 46 46 H 1.08996 * 109.49889 * 298.57277 * 26 9 7 47 47 H 1.09000 * 109.49508 * 58.67210 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2457 -3.6622 -0.0018 11 6 1.4766 -4.9866 -0.0364 12 7 0.5231 -5.0092 1.0812 13 6 0.5129 -6.0357 1.9545 14 8 1.3769 -6.8893 1.8994 15 6 -0.5479 -6.1236 2.9785 16 6 -0.6155 -7.0532 4.0432 17 6 -1.7526 -6.7534 4.7137 18 7 -2.3281 -5.7100 4.0785 19 6 -3.5864 -5.0757 4.4792 20 6 -3.7472 -5.1426 6.0121 21 6 -5.2624 -5.3837 6.2248 22 6 -5.6209 -6.3480 5.0671 23 6 -4.7777 -5.8422 3.8784 24 7 -1.6118 -5.3514 3.0741 25 6 -0.4231 -3.8944 1.2252 26 6 0.3706 -2.5793 1.2487 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5567 -0.8906 29 1 2.8563 -3.6196 0.9002 30 1 2.8879 -3.5913 -0.8796 31 1 2.1752 -5.8175 0.0623 32 1 0.9366 -5.0734 -0.9793 33 1 0.0913 -7.8369 4.2726 34 1 -2.1311 -7.2574 5.5907 35 1 -3.6038 -4.0380 4.1462 36 1 -3.1681 -5.9707 6.4206 37 1 -3.4429 -4.2009 6.4690 38 1 -5.8181 -4.4503 6.1363 39 1 -5.4467 -5.8542 7.1907 40 1 -6.6840 -6.2862 4.8345 41 1 -5.3460 -7.3717 5.3215 42 1 -5.3738 -5.1762 3.2545 43 1 -4.4197 -6.6858 3.2884 44 1 -1.1151 -3.8915 0.3830 45 1 -0.9783 -4.0044 2.1567 46 1 0.9985 -2.5466 2.1390 47 1 -0.3220 -1.7376 1.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334166301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:20 Heat of formation + Delta-G solvation = 25.165131 kcal Electronic energy + Delta-G solvation = -27121.514916 eV Core-core repulsion = 23497.979189 eV Total energy + Delta-G solvation = -3623.535727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.76480 -40.89340 -38.94460 -38.35036 -35.37277 -33.68904 -32.89417 -31.96030 -31.42978 -29.73588 -28.97860 -27.94625 -25.44531 -24.11803 -23.57448 -23.13360 -21.54392 -21.28932 -20.75263 -19.99721 -18.57316 -18.42319 -17.74700 -17.26095 -16.84362 -16.51061 -16.38763 -15.71379 -15.56942 -15.13854 -14.93273 -14.60703 -14.51415 -14.32668 -14.26199 -13.94670 -13.83896 -13.24514 -13.20671 -13.07377 -12.82684 -12.65196 -12.46868 -12.15855 -12.10926 -12.06271 -12.01991 -11.83342 -11.71232 -11.47141 -11.42828 -11.19605 -11.01020 -10.64184 -10.39734 -10.19415 -10.03182 -9.53790 -8.08015 -6.22003 0.51581 1.20653 1.40729 1.41673 1.46237 1.51732 2.09348 2.35625 2.43765 3.17607 3.21368 3.51130 3.52206 3.82671 3.88477 3.98501 4.18162 4.28848 4.32965 4.37286 4.40521 4.44588 4.49958 4.50482 4.55818 4.65741 4.70434 4.76227 4.81160 4.86515 4.91641 4.98521 5.02419 5.12227 5.17129 5.21105 5.22565 5.24600 5.37888 5.41824 5.43491 5.58811 5.64871 5.95203 5.99602 6.09962 6.37202 6.42781 6.86748 6.88544 7.16288 7.45387 8.95718 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003547 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.120266 B = 7893.107544 C = 9379.687959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.592 5.592 13 C 0.592 3.408 14 O -0.578 6.578 15 C -0.043 4.043 16 C -0.197 4.197 17 C 0.005 3.995 18 N -0.271 5.271 19 C 0.129 3.871 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.133 4.133 24 N -0.276 5.276 25 C 0.100 3.900 26 C -0.108 4.108 27 H 0.262 0.738 28 H 0.003 0.997 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.168 0.832 34 H 0.224 0.776 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.124 0.876 46 H 0.019 0.981 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.343 -13.129 14.507 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.323 5.323 13 C 0.380 3.620 14 O -0.458 6.458 15 C -0.200 4.200 16 C -0.225 4.225 17 C -0.138 4.138 18 N -0.058 5.058 19 C 0.029 3.971 20 C -0.170 4.170 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.171 4.171 24 N -0.112 5.112 25 C -0.023 4.023 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.185 0.815 34 H 0.241 0.759 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.141 0.859 46 H 0.038 0.962 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.682 -12.475 13.973 23.800 hybrid contribution 1.140 0.651 -0.244 1.335 sum -13.543 -11.824 13.729 22.621 Atomic orbital electron populations 1.69978 1.06932 1.27124 1.51197 1.25687 0.95731 1.02124 0.94762 0.85648 0.78671 0.79640 0.78222 1.20092 1.20675 1.19784 1.21545 0.92937 0.92185 1.50692 0.93312 1.18616 0.93017 0.92162 0.93486 1.21850 0.98281 0.94153 1.00790 1.21694 0.91917 0.98728 0.88328 1.48126 1.35737 1.20956 1.27499 1.17435 0.83455 0.81027 0.80072 1.90681 1.39340 1.42149 1.73657 1.21848 0.96483 1.00391 1.01315 1.21954 1.00983 1.03158 0.96404 1.23253 0.94918 0.93439 1.02192 1.46313 1.18017 1.23186 1.18329 1.22745 0.78320 0.98062 0.97929 1.22878 0.99488 1.04420 0.90175 1.22475 0.93029 1.00228 0.99488 1.22372 1.00037 0.99754 0.93423 1.22569 0.95131 0.99989 0.99457 1.73403 1.05288 1.23225 1.09320 1.22572 0.90788 0.84885 1.04047 1.21827 0.99103 0.95974 0.97791 0.92927 0.97878 0.94104 0.91173 0.89621 0.90867 0.81492 0.75912 0.87926 0.88742 0.89816 0.90407 0.88850 0.89983 0.90476 0.89853 0.92190 0.92794 0.85898 0.96228 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.31 11.31 21.45 0.24 -52.07 16 2 C 0.02 0.88 5.30 84.65 0.45 1.33 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.21 8.56 25.60 0.22 -29.99 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.36 2.06 -11.51 -0.02 2.34 16 10 C -0.11 -5.01 5.30 30.67 0.16 -4.85 16 11 C 0.12 4.64 6.44 86.36 0.56 5.19 16 12 N -0.59 -24.67 2.97 -821.62 -2.44 -27.11 16 13 C 0.59 24.37 7.69 86.75 0.67 25.03 16 14 O -0.58 -25.83 16.36 -3.96 -0.06 -25.90 16 15 C -0.04 -1.50 6.82 42.45 0.29 -1.21 16 16 C -0.20 -5.34 10.81 22.41 0.24 -5.10 16 17 C 0.00 0.10 10.39 83.54 0.87 0.96 16 18 N -0.27 -6.26 3.14 -323.94 -1.02 -7.28 16 19 C 0.13 2.10 3.88 45.72 0.18 2.27 16 20 C -0.13 -1.26 6.35 31.67 0.20 -1.06 16 21 C -0.11 -0.70 6.91 31.88 0.22 -0.48 16 22 C -0.12 -0.90 6.83 31.67 0.22 -0.69 16 23 C -0.13 -1.79 6.59 31.32 0.21 -1.58 16 24 N -0.28 -8.85 8.46 -48.18 -0.41 -9.26 16 25 C 0.10 4.22 6.14 86.51 0.53 4.75 16 26 C -0.11 -5.36 5.17 30.82 0.16 -5.20 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.09 3.34 7.00 -2.38 -0.02 3.32 16 32 H 0.07 2.74 8.14 -2.38 -0.02 2.73 16 33 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.22 2.05 6.80 -2.91 -0.02 2.03 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 0.70 5.83 -2.39 -0.01 0.68 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.02 7.92 -2.39 -0.02 1.00 16 44 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.12 4.94 4.17 -25.79 -0.11 4.83 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.08 4.23 6.03 -2.39 -0.01 4.22 16 Total: -1.00 -70.83 366.04 4.34 -66.48 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.86 Total: 17.34 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.14 Total: -8.28 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -3.62 Total: -95.72 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.83 4.34 -66.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334166301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.649 kcal (2) G-P(sol) polarization free energy of solvation -70.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds