Wall clock time and date at job start Tue Mar 31 2020 11:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38275 * 119.54289 * 2 1 4 4 C 1.38504 * 119.23652 * 180.02562 * 3 2 1 5 5 C 1.39270 * 118.36128 * 359.97438 * 4 3 2 6 6 N 1.39981 * 120.48570 * 179.97438 * 5 4 3 7 7 C 1.34769 * 120.00123 * 340.16598 * 6 5 4 8 8 O 1.21594 * 120.00285 * 3.22338 * 7 6 5 9 9 N 1.34775 * 120.00074 * 183.23080 * 7 6 5 10 10 C 1.46923 * 120.62998 * 4.41736 * 9 7 6 11 11 C 1.53634 * 108.53971 * 126.37250 * 10 9 7 12 12 C 1.53035 * 109.24061 * 54.85960 * 11 10 9 13 13 C 1.53007 * 109.45821 * 178.49206 * 12 11 10 14 14 C 1.50699 * 109.46625 * 295.06393 * 13 12 11 15 15 H 1.07993 * 120.00515 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99581 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00369 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47134 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47079 * 119.99951 * 18 16 14 21 21 H 1.48505 * 109.47064 * 239.99764 * 18 16 14 22 22 C 1.53042 * 109.53899 * 298.50750 * 12 11 10 23 23 C 1.46925 * 120.63005 * 184.70258 * 9 7 6 24 24 C 1.38842 * 119.02891 * 0.25663 * 5 4 3 25 25 C 1.50697 * 119.66964 * 179.74475 * 24 5 4 26 26 N 1.31823 * 120.65963 * 359.49690 * 24 5 4 27 27 H 1.08999 * 109.47586 * 90.00044 * 1 2 3 28 28 H 1.09009 * 109.47083 * 209.99949 * 1 2 3 29 29 H 1.09002 * 109.47046 * 329.99532 * 1 2 3 30 30 H 1.07995 * 120.37683 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.81965 * 179.97438 * 4 3 2 32 32 H 0.97004 * 119.99628 * 160.16488 * 6 5 4 33 33 H 1.08998 * 109.58594 * 246.20213 * 10 9 7 34 34 H 1.08993 * 109.58756 * 6.63354 * 10 9 7 35 35 H 1.08996 * 109.63406 * 294.86286 * 11 10 9 36 36 H 1.09002 * 109.45622 * 174.74275 * 11 10 9 37 37 H 1.08994 * 109.45439 * 58.52596 * 12 11 10 38 38 H 1.08996 * 109.46864 * 55.06274 * 13 12 11 39 39 H 1.09001 * 109.47047 * 175.06610 * 13 12 11 40 40 H 0.96992 * 120.00209 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49724 * 301.41916 * 22 12 11 42 42 H 1.09003 * 109.52719 * 181.33654 * 22 12 11 43 43 H 1.08998 * 109.59135 * 353.37007 * 23 9 7 44 44 H 1.09003 * 109.58870 * 113.65280 * 23 9 7 45 45 H 1.09007 * 109.46824 * 89.99927 * 25 24 5 46 46 H 1.09002 * 109.47227 * 209.99668 * 25 24 5 47 47 H 1.08992 * 109.47170 * 330.00426 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1956 -0.0005 5 6 4.2288 -0.0335 -0.0005 6 7 5.6273 -0.0929 -0.0016 7 6 6.3468 0.9753 -0.3986 8 8 5.7835 2.0099 -0.7000 9 7 7.6908 0.8967 -0.4618 10 6 8.3798 -0.3731 -0.1946 11 6 9.3004 -0.6889 -1.3834 12 6 10.2383 0.4962 -1.6236 13 6 11.1829 0.1718 -2.7828 14 6 12.0792 -0.9756 -2.3942 15 1 11.9844 -1.4285 -1.4184 16 6 13.0204 -1.4473 -3.2846 17 7 13.1356 -0.8961 -4.4732 18 14 14.1310 -2.8701 -2.8033 19 1 13.8028 -3.3094 -1.4232 20 1 13.9248 -3.9995 -3.7451 21 1 15.5489 -2.4319 -2.8588 22 6 9.4147 1.7388 -1.9696 23 6 8.4951 2.0808 -0.7931 24 6 3.4743 -1.1990 -0.0054 25 6 4.1681 -2.5367 -0.0113 26 7 2.1571 -1.1471 0.0000 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6474 2.1375 -0.0004 31 1 4.1320 2.1201 -0.0010 32 1 6.0785 -0.9029 0.2835 33 1 8.9721 -0.2829 0.7159 34 1 7.6453 -1.1699 -0.0778 35 1 8.6994 -0.8640 -2.2757 36 1 9.8886 -1.5791 -1.1606 37 1 10.8213 0.6862 -0.7225 38 1 10.5991 -0.1044 -3.6608 39 1 11.7913 1.0468 -3.0115 40 1 13.7979 -1.2277 -5.0994 41 1 8.8126 1.5409 -2.8564 42 1 10.0839 2.5770 -2.1639 43 1 7.8367 2.9037 -1.0713 44 1 9.0948 2.3686 0.0704 45 1 4.3356 -2.8637 1.0150 46 1 3.5453 -3.2669 -0.5281 47 1 5.1253 -2.4473 -0.5248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335391534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:39 Heat of formation + Delta-G solvation = -1.492446 kcal Electronic energy + Delta-G solvation = -26472.946193 eV Core-core repulsion = 22848.254507 eV Total energy + Delta-G solvation = -3624.691686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29115 -39.91591 -37.73814 -35.59915 -34.21677 -33.34069 -32.42106 -31.53565 -30.68532 -29.20682 -28.14436 -26.44569 -24.65607 -23.15998 -22.95235 -22.23417 -21.53352 -20.20597 -19.45991 -18.53746 -17.27036 -16.35577 -16.32415 -15.93696 -15.63885 -15.07777 -14.87476 -14.58678 -14.21726 -13.93943 -13.77640 -13.54205 -13.43110 -13.30271 -13.24459 -12.88456 -12.50272 -12.38427 -12.32082 -12.22501 -12.01612 -11.86539 -11.26713 -11.05775 -11.00815 -10.90947 -10.77049 -10.53427 -10.25960 -10.16747 -9.75497 -9.65015 -9.38038 -9.32823 -9.02853 -8.59463 -8.41009 -8.06937 -6.05233 -4.07696 0.93253 1.22986 2.40938 2.98237 3.25933 3.34246 3.36278 3.59604 3.69119 4.06274 4.40205 4.54883 4.69841 4.83287 4.90105 5.05854 5.22904 5.28041 5.28405 5.32531 5.32993 5.35248 5.41299 5.41568 5.51100 5.54128 5.62267 5.71208 5.81333 5.87910 5.92308 5.95819 6.12715 6.17817 6.26849 6.31227 6.39734 6.53050 6.72843 6.82262 6.87238 6.90625 7.02891 7.61088 7.69188 7.75135 7.88132 7.94129 8.34936 8.35843 8.99069 9.56516 11.05965 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002610 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.614292 B =10727.116048 C =11513.411578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.097 3.903 3 C -0.155 4.155 4 C -0.097 4.097 5 C 0.120 3.880 6 N -0.676 5.676 7 C 0.707 3.293 8 O -0.579 6.579 9 N -0.614 5.614 10 C 0.105 3.895 11 C -0.118 4.118 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.130 4.130 23 C 0.128 3.872 24 C 0.095 3.905 25 C -0.105 4.105 26 N -0.464 5.464 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.175 0.825 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 1.645 11.430 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.042 4.042 3 C -0.175 4.175 4 C -0.124 4.124 5 C 0.021 3.979 6 N -0.325 5.325 7 C 0.409 3.591 8 O -0.458 6.458 9 N -0.350 5.350 10 C -0.018 4.018 11 C -0.156 4.156 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.169 4.169 23 C 0.006 3.994 24 C -0.047 4.047 25 C -0.162 4.162 26 N -0.174 5.174 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.192 0.808 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.282 1.612 11.038 23.148 hybrid contribution 1.533 -0.503 0.185 1.624 sum -18.749 1.109 11.223 21.880 Atomic orbital electron populations 1.20629 0.88957 1.03100 1.02820 1.21165 0.96862 0.88311 0.97874 1.21921 0.94366 0.99063 1.02181 1.22440 0.94315 0.99262 0.96425 1.18454 0.82578 0.95011 1.01862 1.42800 1.04163 1.17319 1.68168 1.15834 0.81822 0.83201 0.78220 1.90735 1.69003 1.29695 1.56360 1.47429 1.03254 1.12383 1.71925 1.21999 0.95779 0.83860 1.00148 1.21981 0.96985 1.00552 0.96090 1.21187 0.95553 0.91973 1.01176 1.19129 0.93137 0.96578 0.92145 1.21255 1.17559 1.16393 1.00318 0.92552 1.25034 0.97454 0.96972 0.95050 1.69969 1.35146 1.41681 1.06557 0.86591 0.80701 0.82508 0.78504 1.19772 1.21081 1.21076 1.22049 0.97907 0.99761 0.97137 1.21641 0.93210 0.86432 0.98117 1.20909 0.89378 0.94089 1.00278 1.20670 0.99798 0.92762 1.03017 1.67269 1.07979 1.29384 1.12799 0.90743 0.90779 0.90948 0.84762 0.80828 0.75142 0.90962 0.91635 0.92144 0.89511 0.92226 0.96639 0.96505 0.93052 0.91971 0.90882 0.89353 0.91646 0.90382 0.89851 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.00 0.37 -0.39 16 2 C 0.10 1.08 6.78 -82.57 -0.56 0.52 16 3 C -0.15 -1.71 9.73 -39.47 -0.38 -2.10 16 4 C -0.10 -1.26 8.97 -39.10 -0.35 -1.61 16 5 C 0.12 1.53 6.52 -83.53 -0.54 0.99 16 6 N -0.68 -8.10 4.96 -14.12 -0.07 -8.17 16 7 C 0.71 10.20 8.21 -86.93 -0.71 9.49 16 8 O -0.58 -9.76 12.50 5.28 0.07 -9.69 16 9 N -0.61 -8.37 2.97 -178.23 -0.53 -8.90 16 10 C 0.10 1.28 6.39 -3.48 -0.02 1.26 16 11 C -0.12 -1.88 5.21 -26.38 -0.14 -2.02 16 12 C -0.08 -1.46 2.10 -90.58 -0.19 -1.65 16 13 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 14 C -0.52 -13.59 8.39 -34.44 -0.29 -13.88 16 15 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 18 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 23 C 0.13 1.78 6.44 -3.71 -0.02 1.76 16 24 C 0.10 1.14 6.80 -82.37 -0.56 0.58 16 25 C -0.11 -0.93 9.63 36.00 0.35 -0.59 16 26 N -0.46 -5.83 10.18 -5.59 -0.06 -5.89 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.17 2.49 5.27 -52.54 -0.28 2.21 16 32 H 0.41 3.87 4.77 -40.82 -0.19 3.68 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.63 5.70 -51.93 -0.30 0.33 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.26 6.99 -51.93 -0.36 0.90 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.57 6.89 -51.93 -0.36 0.21 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -31.76 371.07 -9.98 -41.74 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.27 Total: 2.81 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.43 Total: -7.90 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.08 Total: -48.35 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.76 -9.98 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335391534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.249 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds