Wall clock time and date at job start Tue Mar 31 2020 11:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38275 * 119.54289 * 2 1 4 4 C 1.38504 * 119.23652 * 180.02562 * 3 2 1 5 5 C 1.39270 * 118.36128 * 359.97438 * 4 3 2 6 6 N 1.39981 * 120.48570 * 179.97438 * 5 4 3 7 7 C 1.34769 * 120.00123 * 340.16598 * 6 5 4 8 8 O 1.21594 * 120.00285 * 3.22338 * 7 6 5 9 9 N 1.34775 * 120.00074 * 183.23080 * 7 6 5 10 10 C 1.46923 * 120.62998 * 4.41736 * 9 7 6 11 11 C 1.53634 * 108.53971 * 126.37250 * 10 9 7 12 12 C 1.53035 * 109.24061 * 54.85960 * 11 10 9 13 13 C 1.53007 * 109.45821 * 178.49206 * 12 11 10 14 14 C 1.50699 * 109.46625 * 295.06393 * 13 12 11 15 15 H 1.07993 * 120.00515 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99581 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00369 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47134 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47079 * 119.99951 * 18 16 14 21 21 H 1.48505 * 109.47064 * 239.99764 * 18 16 14 22 22 C 1.53042 * 109.53899 * 298.50750 * 12 11 10 23 23 C 1.46925 * 120.63005 * 184.70258 * 9 7 6 24 24 C 1.38842 * 119.02891 * 0.25663 * 5 4 3 25 25 C 1.50697 * 119.66964 * 179.74475 * 24 5 4 26 26 N 1.31823 * 120.65963 * 359.49690 * 24 5 4 27 27 H 1.08999 * 109.47586 * 90.00044 * 1 2 3 28 28 H 1.09009 * 109.47083 * 209.99949 * 1 2 3 29 29 H 1.09002 * 109.47046 * 329.99532 * 1 2 3 30 30 H 1.07995 * 120.37683 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.81965 * 179.97438 * 4 3 2 32 32 H 0.97004 * 119.99628 * 160.16488 * 6 5 4 33 33 H 1.08998 * 109.58594 * 246.20213 * 10 9 7 34 34 H 1.08993 * 109.58756 * 6.63354 * 10 9 7 35 35 H 1.08996 * 109.63406 * 294.86286 * 11 10 9 36 36 H 1.09002 * 109.45622 * 174.74275 * 11 10 9 37 37 H 1.08994 * 109.45439 * 58.52596 * 12 11 10 38 38 H 1.08996 * 109.46864 * 55.06274 * 13 12 11 39 39 H 1.09001 * 109.47047 * 175.06610 * 13 12 11 40 40 H 0.96992 * 120.00209 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.49724 * 301.41916 * 22 12 11 42 42 H 1.09003 * 109.52719 * 181.33654 * 22 12 11 43 43 H 1.08998 * 109.59135 * 353.37007 * 23 9 7 44 44 H 1.09003 * 109.58870 * 113.65280 * 23 9 7 45 45 H 1.09007 * 109.46824 * 89.99927 * 25 24 5 46 46 H 1.09002 * 109.47227 * 209.99668 * 25 24 5 47 47 H 1.08992 * 109.47170 * 330.00426 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1956 -0.0005 5 6 4.2288 -0.0335 -0.0005 6 7 5.6273 -0.0929 -0.0016 7 6 6.3468 0.9753 -0.3986 8 8 5.7835 2.0099 -0.7000 9 7 7.6908 0.8967 -0.4618 10 6 8.3798 -0.3731 -0.1946 11 6 9.3004 -0.6889 -1.3834 12 6 10.2383 0.4962 -1.6236 13 6 11.1829 0.1718 -2.7828 14 6 12.0792 -0.9756 -2.3942 15 1 11.9844 -1.4285 -1.4184 16 6 13.0204 -1.4473 -3.2846 17 7 13.1356 -0.8961 -4.4732 18 14 14.1310 -2.8701 -2.8033 19 1 13.8028 -3.3094 -1.4232 20 1 13.9248 -3.9995 -3.7451 21 1 15.5489 -2.4319 -2.8588 22 6 9.4147 1.7388 -1.9696 23 6 8.4951 2.0808 -0.7931 24 6 3.4743 -1.1990 -0.0054 25 6 4.1681 -2.5367 -0.0113 26 7 2.1571 -1.1471 0.0000 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8901 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6474 2.1375 -0.0004 31 1 4.1320 2.1201 -0.0010 32 1 6.0785 -0.9029 0.2835 33 1 8.9721 -0.2829 0.7159 34 1 7.6453 -1.1699 -0.0778 35 1 8.6994 -0.8640 -2.2757 36 1 9.8886 -1.5791 -1.1606 37 1 10.8213 0.6862 -0.7225 38 1 10.5991 -0.1044 -3.6608 39 1 11.7913 1.0468 -3.0115 40 1 13.7979 -1.2277 -5.0994 41 1 8.8126 1.5409 -2.8564 42 1 10.0839 2.5770 -2.1639 43 1 7.8367 2.9037 -1.0713 44 1 9.0948 2.3686 0.0704 45 1 4.3356 -2.8637 1.0150 46 1 3.5453 -3.2669 -0.5281 47 1 5.1253 -2.4473 -0.5248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335391534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:38 Heat of formation + Delta-G solvation = -19.454354 kcal Electronic energy + Delta-G solvation = -26473.725080 eV Core-core repulsion = 22848.254507 eV Total energy + Delta-G solvation = -3625.470573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28304 -40.90506 -38.98769 -36.59468 -35.79400 -34.21168 -34.08682 -32.63026 -31.80805 -30.01422 -29.71229 -27.41265 -26.18347 -24.29584 -24.11121 -23.44584 -22.58362 -21.49238 -20.61512 -19.66988 -18.40753 -18.27410 -17.27641 -16.89478 -16.72412 -16.51385 -16.01751 -15.74542 -15.32903 -15.25428 -14.75257 -14.70792 -14.57759 -14.40409 -14.16323 -14.08283 -13.91705 -13.41198 -13.24044 -13.00760 -12.95992 -12.95654 -12.81149 -12.70506 -12.53157 -12.30510 -12.18160 -11.92090 -11.73154 -11.41844 -11.29320 -11.04490 -10.83605 -10.54843 -10.52362 -10.29263 -9.74694 -8.98416 -8.15598 -6.25074 0.05878 0.30845 1.37858 1.41818 1.43032 1.54797 1.91302 2.43399 2.63621 2.79453 3.18583 3.31122 3.73380 3.84005 3.85341 3.98176 4.05692 4.07767 4.17114 4.25714 4.39635 4.48368 4.55215 4.62918 4.65265 4.71793 4.76495 4.80473 4.84666 4.87504 4.94775 4.97413 5.05533 5.11964 5.20058 5.26079 5.31485 5.32573 5.35916 5.40404 5.54735 5.58728 5.77187 5.83648 5.85921 5.91122 6.29619 6.69077 6.92726 7.01543 7.28230 7.44005 8.96575 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002610 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.614292 B =10727.116048 C =11513.411578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.090 3.910 3 C -0.157 4.157 4 C -0.114 4.114 5 C 0.101 3.899 6 N -0.663 5.663 7 C 0.703 3.297 8 O -0.607 6.607 9 N -0.615 5.615 10 C 0.112 3.888 11 C -0.113 4.113 12 C -0.073 4.073 13 C 0.031 3.969 14 C -0.523 4.523 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.255 1.255 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.123 4.123 23 C 0.136 3.864 24 C 0.090 3.910 25 C -0.104 4.104 26 N -0.483 5.483 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.421 0.579 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.068 0.932 38 H -0.018 1.018 39 H -0.014 1.014 40 H 0.260 0.740 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.676 0.370 13.781 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.049 4.049 3 C -0.177 4.177 4 C -0.142 4.142 5 C 0.003 3.997 6 N -0.312 5.312 7 C 0.406 3.594 8 O -0.488 6.488 9 N -0.351 5.351 10 C -0.010 4.010 11 C -0.151 4.151 12 C -0.091 4.091 13 C -0.006 4.006 14 C -0.561 4.561 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.785 3.215 19 H -0.178 1.178 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.161 4.161 23 C 0.014 3.986 24 C -0.051 4.051 25 C -0.162 4.162 26 N -0.194 5.194 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.263 0.737 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.000 1.000 39 H 0.004 0.996 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.102 0.898 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.336 0.310 13.421 25.208 hybrid contribution 1.794 -0.064 -0.600 1.893 sum -19.542 0.245 12.820 23.373 Atomic orbital electron populations 1.20720 0.86560 1.04281 1.03690 1.21752 0.98544 0.87980 0.96594 1.22178 0.93750 1.00261 1.01507 1.22447 0.95334 0.98966 0.97475 1.18585 0.82823 0.95327 1.03010 1.42589 1.03911 1.17073 1.67672 1.15964 0.81961 0.83370 0.78155 1.90731 1.69553 1.30994 1.57545 1.47442 1.03108 1.12713 1.71794 1.22030 0.96007 0.84104 0.98815 1.21855 0.96910 0.99068 0.97292 1.21036 0.95312 0.94039 0.98760 1.19033 0.93374 0.94869 0.93313 1.21708 1.17245 1.16469 1.00653 0.91160 1.25991 0.99369 0.99927 0.95007 1.70123 1.36262 1.43657 1.07952 0.85469 0.78245 0.78833 0.78921 1.17807 1.21022 1.21089 1.21929 0.97819 0.98803 0.97553 1.21536 0.92805 0.86553 0.97741 1.21346 0.89411 0.94998 0.99331 1.20764 0.99832 0.91180 1.04381 1.67375 1.08328 1.30116 1.13576 0.89884 0.90634 0.88768 0.82424 0.82385 0.73729 0.88702 0.88522 0.93874 0.90194 0.91372 0.99991 0.99584 0.93140 0.93905 0.90788 0.89771 0.89415 0.88455 0.89774 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.17 71.23 0.72 -0.54 16 2 C 0.09 1.88 6.78 42.56 0.29 2.16 16 3 C -0.16 -3.29 9.73 22.34 0.22 -3.07 16 4 C -0.11 -2.94 8.97 22.58 0.20 -2.74 16 5 C 0.10 2.48 6.52 38.23 0.25 2.73 16 6 N -0.66 -14.78 4.96 -316.86 -1.57 -16.35 16 7 C 0.70 19.47 8.21 179.06 1.47 20.94 16 8 O -0.61 -20.37 12.50 -4.01 -0.05 -20.42 16 9 N -0.62 -15.68 2.97 -836.07 -2.48 -18.16 16 10 C 0.11 2.43 6.39 86.51 0.55 2.98 16 11 C -0.11 -3.49 5.21 30.82 0.16 -3.33 16 12 C -0.07 -2.65 2.10 -10.77 -0.02 -2.67 16 13 C 0.03 1.55 4.45 29.85 0.13 1.69 16 14 C -0.52 -27.63 8.39 25.60 0.21 -27.42 16 15 H 0.07 3.45 7.05 -2.91 -0.02 3.43 16 16 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 17 N -0.94 -56.45 13.29 21.45 0.28 -56.16 16 18 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 19 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.12 -3.94 5.36 30.67 0.16 -3.77 16 23 C 0.14 3.61 6.44 86.36 0.56 4.16 16 24 C 0.09 2.03 6.80 42.70 0.29 2.32 16 25 C -0.10 -1.63 9.63 71.24 0.69 -0.94 16 26 N -0.48 -11.49 10.18 -171.60 -1.75 -13.23 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.16 4.59 5.27 -3.79 -0.02 4.57 16 32 H 0.42 6.84 4.77 -92.71 -0.44 6.39 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.50 5.70 -2.39 -0.01 1.49 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.08 2.58 6.91 -2.39 -0.02 2.57 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 2.35 6.99 -2.39 -0.02 2.33 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 1.08 6.89 -2.39 -0.02 1.06 16 Total: -1.00 -71.00 371.07 3.34 -67.66 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.53 Total: 19.37 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 6.35 Total: -7.36 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -5.51 Total: -103.91 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.00 3.34 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335391534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.202 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds