Wall clock time and date at job start Tue Mar 31 2020 11:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00463 * 3 2 1 5 5 H 1.48509 * 109.46966 * 30.00056 * 3 2 1 6 6 H 1.48497 * 109.47413 * 149.99972 * 3 2 1 7 7 C 1.37874 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00075 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46178 * 175.00226 * 10 9 7 12 12 C 1.53186 * 109.31475 * 181.38971 * 11 10 9 13 13 N 1.46928 * 108.77092 * 305.35790 * 12 11 10 14 14 C 1.34776 * 120.63524 * 233.58416 * 13 12 11 15 15 O 1.21587 * 119.99560 * 5.22828 * 14 13 12 16 16 N 1.34773 * 120.00610 * 185.22431 * 14 13 12 17 17 C 1.46498 * 120.00270 * 175.01403 * 16 14 13 18 18 C 1.52998 * 109.47044 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47229 * 180.02562 * 18 17 16 20 20 C 1.38648 * 120.78910 * 90.00153 * 19 18 17 21 21 C 1.38205 * 119.16159 * 179.97438 * 20 19 18 22 22 N 1.31872 * 120.76451 * 0.02562 * 21 20 19 23 23 C 1.31875 * 121.72257 * 359.95433 * 22 21 20 24 24 C 1.38202 * 120.76522 * 0.04731 * 23 22 21 25 25 C 1.46929 * 118.73756 * 53.86300 * 13 12 11 26 26 C 1.53040 * 109.45781 * 295.06598 * 10 9 7 27 27 H 0.96991 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47375 * 59.99689 * 9 7 2 29 29 H 1.08998 * 109.47167 * 299.99607 * 9 7 2 30 30 H 1.08995 * 109.46090 * 55.02562 * 10 9 7 31 31 H 1.09000 * 109.49855 * 61.43002 * 11 10 9 32 32 H 1.09007 * 109.51691 * 301.35315 * 11 10 9 33 33 H 1.08996 * 109.59164 * 185.57796 * 12 11 10 34 34 H 1.08993 * 109.70941 * 65.21422 * 12 11 10 35 35 H 0.97010 * 119.99569 * 355.01847 * 16 14 13 36 36 H 1.09006 * 109.46989 * 60.00266 * 17 16 14 37 37 H 1.08994 * 109.47372 * 299.99881 * 17 16 14 38 38 H 1.08997 * 109.47187 * 60.00330 * 18 17 16 39 39 H 1.08999 * 109.47452 * 300.00355 * 18 17 16 40 40 H 1.07997 * 120.42204 * 359.70486 * 20 19 18 41 41 H 1.07996 * 119.61671 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.61679 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.41710 * 180.02562 * 24 23 22 44 44 H 1.09008 * 109.58479 * 65.92627 * 25 13 12 45 45 H 1.09003 * 109.58855 * 186.34493 * 25 13 12 46 46 H 1.08997 * 109.50248 * 298.56354 * 26 10 9 47 47 H 1.09003 * 109.49718 * 58.62999 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5468 -2.6380 -0.1273 12 6 6.0509 -4.0842 -0.1618 13 7 5.5428 -4.7903 1.0223 14 6 6.3860 -5.4406 1.8485 15 8 7.5868 -5.3680 1.6718 16 7 5.8983 -6.1714 2.8705 17 6 6.8062 -6.9657 3.7018 18 6 6.0034 -7.6932 4.7821 19 6 6.9373 -8.5099 5.6377 20 6 7.5195 -7.9653 6.7721 21 6 8.3705 -8.7447 7.5326 22 7 8.6308 -9.9912 7.1897 23 6 8.0949 -10.5419 6.1179 24 6 7.2345 -9.8236 5.3093 25 6 4.0973 -4.7793 1.2852 26 6 3.6157 -3.3206 1.3064 27 1 -0.4849 0.8400 0.0004 28 1 3.8753 -0.6803 0.8888 29 1 3.8746 -0.6800 -0.8911 30 1 3.5870 -3.1754 -0.8428 31 1 5.9832 -2.1208 0.7272 32 1 5.8366 -2.1297 -1.0470 33 1 7.1408 -4.0917 -0.1518 34 1 5.6903 -4.5777 -1.0642 35 1 4.9461 -6.1714 3.0557 36 1 7.5363 -6.3078 4.1734 37 1 7.3235 -7.6958 3.0795 38 1 5.2730 -8.3510 4.3110 39 1 5.4863 -6.9628 5.4044 40 1 7.3140 -6.9437 7.0555 41 1 8.8283 -8.3279 8.4174 42 1 8.3314 -11.5659 5.8690 43 1 6.7985 -10.2803 4.4331 44 1 3.5786 -5.3269 0.4983 45 1 3.8978 -5.2456 2.2501 46 1 4.0703 -2.7971 2.1474 47 1 2.5306 -3.2979 1.4073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580189622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:55 Heat of formation + Delta-G solvation = -7.417992 kcal Electronic energy + Delta-G solvation = -25626.933149 eV Core-core repulsion = 22001.984512 eV Total energy + Delta-G solvation = -3624.948637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63778 -40.25065 -37.70517 -36.01470 -34.17762 -33.62451 -32.14243 -31.59029 -30.83202 -29.50585 -28.35859 -25.07473 -24.00685 -23.85850 -22.95995 -21.91650 -21.59632 -20.05938 -19.31691 -18.00134 -16.99535 -16.87816 -16.73209 -16.27784 -15.92265 -15.70350 -14.85034 -14.51723 -14.37690 -14.21899 -14.07834 -13.95776 -13.78476 -13.27837 -13.25810 -12.93280 -12.89901 -12.47390 -12.33458 -12.22636 -12.06765 -11.57503 -11.47984 -11.17725 -10.94896 -10.68544 -10.35885 -10.16609 -9.97475 -9.87338 -9.79518 -9.72987 -9.55105 -9.51090 -9.24371 -9.09697 -8.56798 -8.33571 -6.07988 -4.05420 0.74453 0.81166 2.64564 3.23081 3.28106 3.36146 3.39907 3.41677 3.80806 4.08865 4.28180 4.29099 4.42368 4.56880 4.69630 4.72114 4.81902 5.01668 5.06943 5.23326 5.25712 5.27537 5.36387 5.39334 5.40325 5.48238 5.57967 5.59870 5.61694 5.65610 5.89628 5.94025 6.01219 6.22868 6.27924 6.29683 6.34813 6.38817 6.54678 6.76496 6.83120 6.92748 6.99371 7.22386 7.41506 7.58930 7.76415 7.93795 8.49622 8.60680 8.96181 9.55383 11.05144 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.002119 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.433162 B =13213.527581 C =13643.860551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.133 4.133 12 C 0.130 3.870 13 N -0.623 5.623 14 C 0.708 3.292 15 O -0.598 6.598 16 N -0.751 5.751 17 C 0.147 3.853 18 C -0.096 4.096 19 C -0.034 4.034 20 C -0.167 4.167 21 C 0.100 3.900 22 N -0.490 5.490 23 C 0.099 3.901 24 C -0.167 4.167 25 C 0.110 3.890 26 C -0.119 4.119 27 H 0.262 0.738 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.567 -18.562 10.584 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.171 4.171 12 C 0.007 3.993 13 N -0.360 5.360 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.410 5.410 17 C 0.022 3.978 18 C -0.134 4.134 19 C -0.043 4.043 20 C -0.187 4.187 21 C -0.057 4.057 22 N -0.199 5.199 23 C -0.058 4.058 24 C -0.187 4.187 25 C -0.013 4.013 26 C -0.158 4.158 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.154 0.846 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.865 -18.898 10.961 25.875 hybrid contribution -0.845 1.525 -0.423 1.794 sum 13.020 -17.373 10.538 24.133 Atomic orbital electron populations 1.69908 1.06262 1.26848 1.51309 1.25031 0.94706 0.99147 0.94677 0.86811 0.80369 0.83787 0.78490 1.20364 1.21500 1.19079 1.21128 0.89411 0.94288 1.50538 0.90870 1.19624 0.97153 0.91687 0.96263 1.20990 0.92322 0.98986 0.96714 1.22077 0.97815 0.95053 1.02179 1.21523 0.99975 0.92187 0.85569 1.47357 1.06893 1.54656 1.27059 1.15794 0.85064 0.78688 0.79524 1.90889 1.13393 1.68251 1.75134 1.45250 1.11036 1.51240 1.33505 1.21037 0.91867 0.93899 0.91005 1.20846 0.96997 0.98987 0.96546 1.20084 0.95577 0.94104 0.94535 1.22125 0.98900 1.01662 0.95970 1.22794 0.94516 0.89639 0.98752 1.67690 1.23025 1.12589 1.16565 1.22787 0.92759 1.00061 0.90156 1.22103 1.00301 0.94813 1.01510 1.21892 0.79865 0.99284 1.00267 1.21979 1.02588 0.92461 0.98723 0.92792 0.96699 0.96988 0.91722 0.92070 0.91106 0.89531 0.91892 0.76599 0.91416 0.91568 0.89600 0.89524 0.84550 0.82662 0.82696 0.84621 0.91313 0.91435 0.92339 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -13.83 8.94 -34.44 -0.31 -14.13 16 8 H 0.07 2.08 7.30 -52.48 -0.38 1.69 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 10 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 11 C -0.13 -2.08 5.36 -26.62 -0.14 -2.22 16 12 C 0.13 1.86 6.44 -3.71 -0.02 1.83 16 13 N -0.62 -8.72 2.97 -178.23 -0.53 -9.25 16 14 C 0.71 10.37 8.30 -86.92 -0.72 9.65 16 15 O -0.60 -10.90 15.77 5.29 0.08 -10.82 16 16 N -0.75 -7.97 5.46 -65.23 -0.36 -8.32 16 17 C 0.15 1.33 5.66 -4.04 -0.02 1.31 16 18 C -0.10 -0.59 5.51 -27.88 -0.15 -0.74 16 19 C -0.03 -0.24 5.17 -104.32 -0.54 -0.78 16 20 C -0.17 -1.18 9.82 -39.44 -0.39 -1.56 16 21 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 22 N -0.49 -4.57 10.36 -13.25 -0.14 -4.71 16 23 C 0.10 0.75 11.18 -17.55 -0.20 0.56 16 24 C -0.17 -1.14 9.82 -39.44 -0.39 -1.53 16 25 C 0.11 1.38 6.42 -3.49 -0.02 1.36 16 26 C -0.12 -1.93 5.21 -26.39 -0.14 -2.07 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 3.33 5.96 -40.82 -0.24 3.08 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.09 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.07 0.66 5.64 -51.93 -0.29 0.37 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 1.59 6.91 -51.93 -0.36 1.24 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -33.90 376.28 -10.28 -44.18 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.49 Total: 0.68 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.62 Total: -7.81 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.25 Total: -48.58 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.90 -10.28 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580189622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.759 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds