Wall clock time and date at job start Tue Mar 31 2020 11:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00463 * 3 2 1 5 5 H 1.48509 * 109.46966 * 30.00056 * 3 2 1 6 6 H 1.48497 * 109.47413 * 149.99972 * 3 2 1 7 7 C 1.37874 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00075 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46178 * 175.00226 * 10 9 7 12 12 C 1.53186 * 109.31475 * 181.38971 * 11 10 9 13 13 N 1.46928 * 108.77092 * 305.35790 * 12 11 10 14 14 C 1.34776 * 120.63524 * 233.58416 * 13 12 11 15 15 O 1.21587 * 119.99560 * 5.22828 * 14 13 12 16 16 N 1.34773 * 120.00610 * 185.22431 * 14 13 12 17 17 C 1.46498 * 120.00270 * 175.01403 * 16 14 13 18 18 C 1.52998 * 109.47044 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47229 * 180.02562 * 18 17 16 20 20 C 1.38648 * 120.78910 * 90.00153 * 19 18 17 21 21 C 1.38205 * 119.16159 * 179.97438 * 20 19 18 22 22 N 1.31872 * 120.76451 * 0.02562 * 21 20 19 23 23 C 1.31875 * 121.72257 * 359.95433 * 22 21 20 24 24 C 1.38202 * 120.76522 * 0.04731 * 23 22 21 25 25 C 1.46929 * 118.73756 * 53.86300 * 13 12 11 26 26 C 1.53040 * 109.45781 * 295.06598 * 10 9 7 27 27 H 0.96991 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47375 * 59.99689 * 9 7 2 29 29 H 1.08998 * 109.47167 * 299.99607 * 9 7 2 30 30 H 1.08995 * 109.46090 * 55.02562 * 10 9 7 31 31 H 1.09000 * 109.49855 * 61.43002 * 11 10 9 32 32 H 1.09007 * 109.51691 * 301.35315 * 11 10 9 33 33 H 1.08996 * 109.59164 * 185.57796 * 12 11 10 34 34 H 1.08993 * 109.70941 * 65.21422 * 12 11 10 35 35 H 0.97010 * 119.99569 * 355.01847 * 16 14 13 36 36 H 1.09006 * 109.46989 * 60.00266 * 17 16 14 37 37 H 1.08994 * 109.47372 * 299.99881 * 17 16 14 38 38 H 1.08997 * 109.47187 * 60.00330 * 18 17 16 39 39 H 1.08999 * 109.47452 * 300.00355 * 18 17 16 40 40 H 1.07997 * 120.42204 * 359.70486 * 20 19 18 41 41 H 1.07996 * 119.61671 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.61679 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.41710 * 180.02562 * 24 23 22 44 44 H 1.09008 * 109.58479 * 65.92627 * 25 13 12 45 45 H 1.09003 * 109.58855 * 186.34493 * 25 13 12 46 46 H 1.08997 * 109.50248 * 298.56354 * 26 10 9 47 47 H 1.09003 * 109.49718 * 58.62999 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5468 -2.6380 -0.1273 12 6 6.0509 -4.0842 -0.1618 13 7 5.5428 -4.7903 1.0223 14 6 6.3860 -5.4406 1.8485 15 8 7.5868 -5.3680 1.6718 16 7 5.8983 -6.1714 2.8705 17 6 6.8062 -6.9657 3.7018 18 6 6.0034 -7.6932 4.7821 19 6 6.9373 -8.5099 5.6377 20 6 7.5195 -7.9653 6.7721 21 6 8.3705 -8.7447 7.5326 22 7 8.6308 -9.9912 7.1897 23 6 8.0949 -10.5419 6.1179 24 6 7.2345 -9.8236 5.3093 25 6 4.0973 -4.7793 1.2852 26 6 3.6157 -3.3206 1.3064 27 1 -0.4849 0.8400 0.0004 28 1 3.8753 -0.6803 0.8888 29 1 3.8746 -0.6800 -0.8911 30 1 3.5870 -3.1754 -0.8428 31 1 5.9832 -2.1208 0.7272 32 1 5.8366 -2.1297 -1.0470 33 1 7.1408 -4.0917 -0.1518 34 1 5.6903 -4.5777 -1.0642 35 1 4.9461 -6.1714 3.0557 36 1 7.5363 -6.3078 4.1734 37 1 7.3235 -7.6958 3.0795 38 1 5.2730 -8.3510 4.3110 39 1 5.4863 -6.9628 5.4044 40 1 7.3140 -6.9437 7.0555 41 1 8.8283 -8.3279 8.4174 42 1 8.3314 -11.5659 5.8690 43 1 6.7985 -10.2803 4.4331 44 1 3.5786 -5.3269 0.4983 45 1 3.8978 -5.2456 2.2501 46 1 4.0703 -2.7971 2.1474 47 1 2.5306 -3.2979 1.4073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580189622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:54 Heat of formation + Delta-G solvation = -28.346170 kcal Electronic energy + Delta-G solvation = -25627.840663 eV Core-core repulsion = 22001.984512 eV Total energy + Delta-G solvation = -3625.856151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49655 -41.02881 -38.93894 -36.84734 -35.68378 -34.58494 -33.88663 -32.09549 -31.98833 -30.57876 -29.69744 -26.37489 -24.99975 -24.37474 -24.16917 -23.10526 -22.47173 -21.39896 -20.50541 -19.16907 -18.74369 -17.64047 -17.44682 -17.15853 -16.69412 -16.44187 -16.34381 -15.78716 -15.40587 -15.24791 -15.19330 -14.91978 -14.74595 -14.52883 -14.40550 -14.16793 -14.08379 -13.55392 -13.48970 -13.10063 -13.03705 -12.85735 -12.81637 -12.40662 -12.15256 -12.10722 -11.97900 -11.74490 -11.39589 -11.28862 -11.04322 -10.90260 -10.70328 -10.52779 -10.42001 -10.25338 -10.05641 -9.44295 -8.24646 -6.25538 0.23067 0.26978 1.35690 1.38085 1.48543 1.66282 2.11195 2.38124 2.83189 2.92914 3.11214 3.61749 3.74257 3.81433 3.91402 3.96246 4.02640 4.07236 4.21495 4.21956 4.22591 4.28620 4.42213 4.52805 4.53353 4.66496 4.76239 4.81310 4.82224 4.88035 4.94875 4.95513 4.99540 5.08734 5.11475 5.19955 5.25210 5.36341 5.42835 5.43037 5.46925 5.61578 5.75045 5.75897 5.81127 5.99203 6.35512 6.81892 6.94150 7.05581 7.38325 7.53300 8.91292 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.002119 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.433162 B =13213.527581 C =13643.860551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.512 4.512 8 H 0.045 0.955 9 C -0.009 4.009 10 C -0.069 4.069 11 C -0.123 4.123 12 C 0.134 3.866 13 N -0.624 5.624 14 C 0.703 3.297 15 O -0.637 6.637 16 N -0.736 5.736 17 C 0.149 3.851 18 C -0.083 4.083 19 C -0.044 4.044 20 C -0.172 4.172 21 C 0.084 3.916 22 N -0.520 5.520 23 C 0.084 3.916 24 C -0.169 4.169 25 C 0.119 3.881 26 C -0.115 4.115 27 H 0.263 0.737 28 H 0.011 0.989 29 H 0.013 0.987 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.156 0.844 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.051 0.949 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.293 -19.206 10.835 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.550 4.550 8 H 0.063 0.937 9 C -0.046 4.046 10 C -0.088 4.088 11 C -0.161 4.161 12 C 0.011 3.989 13 N -0.361 5.361 14 C 0.404 3.596 15 O -0.519 6.519 16 N -0.395 5.395 17 C 0.025 3.975 18 C -0.120 4.120 19 C -0.053 4.053 20 C -0.191 4.191 21 C -0.072 4.072 22 N -0.230 5.230 23 C -0.072 4.072 24 C -0.188 4.188 25 C -0.004 4.004 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.169 0.831 41 H 0.188 0.812 42 H 0.190 0.810 43 H 0.174 0.826 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.070 0.930 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.576 -19.565 11.231 26.859 hybrid contribution -1.099 1.666 -0.494 2.057 sum 13.477 -17.899 10.737 24.845 Atomic orbital electron populations 1.70049 1.07997 1.27756 1.53392 1.25903 0.95478 1.03024 0.94856 0.85809 0.79459 0.79344 0.78903 1.19553 1.21424 1.17628 1.21452 0.91671 0.93089 1.48812 0.93671 1.19599 0.94253 0.94875 0.95902 1.20914 0.94003 0.96185 0.97703 1.21957 0.95597 0.96286 1.02303 1.21463 0.99641 0.91341 0.86482 1.47383 1.07292 1.54510 1.26877 1.15994 0.84545 0.78954 0.80096 1.90864 1.15158 1.69667 1.76227 1.45148 1.11934 1.50118 1.32266 1.21065 0.91889 0.93318 0.91275 1.20757 0.96559 0.99110 0.95573 1.20274 0.95819 0.94436 0.94722 1.22351 0.98511 1.02311 0.95948 1.23132 0.94966 0.89516 0.99581 1.67687 1.24120 1.13515 1.17661 1.23171 0.92934 1.01077 0.89996 1.22357 0.99814 0.94804 1.01858 1.21878 0.78972 0.96873 1.02658 1.21863 1.01196 0.94938 0.97382 0.92800 0.97113 0.96837 0.91991 0.93005 0.90129 0.90140 0.90268 0.75070 0.92966 0.92379 0.87792 0.88315 0.83062 0.81175 0.80971 0.82632 0.90015 0.88234 0.93047 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.94 43.77 27.47 68.60 1.88 45.65 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 7 C -0.51 -27.70 8.94 25.60 0.23 -27.48 16 8 H 0.05 2.63 7.30 -2.91 -0.02 2.61 16 9 C -0.01 -0.39 3.52 29.85 0.10 -0.29 16 10 C -0.07 -2.42 2.10 -10.77 -0.02 -2.44 16 11 C -0.12 -3.63 5.36 30.67 0.16 -3.47 16 12 C 0.13 3.55 6.44 86.36 0.56 4.10 16 13 N -0.62 -16.05 2.97 -836.07 -2.48 -18.53 16 14 C 0.70 19.20 8.30 179.06 1.49 20.69 16 15 O -0.64 -22.58 15.77 -3.99 -0.06 -22.64 16 16 N -0.74 -13.68 5.46 -478.55 -2.62 -16.30 16 17 C 0.15 2.41 5.66 86.38 0.49 2.90 16 18 C -0.08 -0.77 5.51 29.85 0.16 -0.61 16 19 C -0.04 -0.54 5.17 -19.67 -0.10 -0.64 16 20 C -0.17 -2.19 9.82 22.36 0.22 -1.97 16 21 C 0.08 1.25 11.18 84.68 0.95 2.20 16 22 N -0.52 -9.47 10.36 -195.84 -2.03 -11.50 16 23 C 0.08 1.20 11.18 84.68 0.95 2.15 16 24 C -0.17 -2.00 9.82 22.36 0.22 -1.78 16 25 C 0.12 2.66 6.42 86.51 0.56 3.22 16 26 C -0.12 -3.59 5.21 30.82 0.16 -3.43 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 29 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.08 2.29 6.99 -2.39 -0.02 2.27 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.41 5.39 5.96 -92.70 -0.55 4.84 16 36 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 39 H 0.10 0.73 8.10 -2.39 -0.02 0.71 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.10 1.59 5.64 -2.39 -0.01 1.58 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.07 2.42 6.91 -2.39 -0.02 2.40 16 Total: -1.00 -74.28 376.28 1.93 -72.36 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.35 Total: 14.82 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.58 Total: -6.18 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -6.82 Total: -104.00 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -74.28 1.93 -72.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580189622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.011 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds