Wall clock time and date at job start Tue Mar 31 2020 11:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86810 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46652 * 275.05291 * 3 2 1 5 5 H 1.48498 * 109.47095 * 35.05363 * 3 2 1 6 6 H 1.48498 * 109.46957 * 155.05420 * 3 2 1 7 7 C 1.39047 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00028 * 2.45209 * 7 2 1 9 9 N 1.36844 * 120.00094 * 182.46136 * 7 2 1 10 10 C 1.34779 * 119.99617 * 293.02184 * 9 7 2 11 11 O 1.21676 * 119.99893 * 180.87360 * 10 9 7 12 12 C 1.47018 * 119.99909 * 0.87812 * 10 9 7 13 13 C 1.38519 * 126.89945 * 351.53868 * 12 10 9 14 14 C 1.39648 * 105.35001 * 179.91810 * 13 12 10 15 15 N 1.30875 * 107.88049 * 0.35529 * 14 13 12 16 16 N 1.28442 * 110.95009 * 359.77248 * 15 14 13 17 17 C 1.46497 * 125.19305 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47326 * 277.23460 * 17 16 15 19 19 C 1.53782 * 113.61674 * 272.58686 * 18 17 16 20 20 C 1.53780 * 87.07951 * 220.01485 * 19 18 17 21 21 C 1.53782 * 87.08428 * 25.43252 * 20 19 18 22 22 C 1.46498 * 120.00329 * 113.02694 * 9 7 2 23 23 C 1.55236 * 110.47024 * 49.99578 * 22 9 7 24 24 C 1.54886 * 102.58668 * 203.39709 * 23 22 9 25 25 C 1.54258 * 104.31559 * 37.93314 * 24 23 22 26 26 C 1.53872 * 106.60016 * 336.32250 * 25 24 23 27 27 H 0.96998 * 120.00152 * 5.00849 * 1 2 3 28 28 H 1.07999 * 127.32208 * 0.03341 * 13 12 10 29 29 H 1.08003 * 126.05659 * 180.12560 * 14 13 12 30 30 H 1.09004 * 109.47038 * 37.23667 * 17 16 15 31 31 H 1.09003 * 109.47305 * 157.23452 * 17 16 15 32 32 H 1.09004 * 112.84811 * 43.89330 * 18 17 16 33 33 H 1.08995 * 113.61482 * 334.56706 * 19 18 17 34 34 H 1.09000 * 113.60826 * 105.46711 * 19 18 17 35 35 H 1.08996 * 113.61871 * 270.87870 * 20 19 18 36 36 H 1.09004 * 113.60899 * 139.98170 * 20 19 18 37 37 H 1.08991 * 113.61718 * 220.01610 * 21 20 19 38 38 H 1.09000 * 113.69034 * 89.12037 * 21 20 19 39 39 H 1.09002 * 110.43609 * 172.65432 * 22 9 7 40 40 H 1.09003 * 110.89736 * 85.10535 * 23 22 9 41 41 H 1.08996 * 110.76521 * 321.62563 * 23 22 9 42 42 H 1.09001 * 110.49013 * 279.18649 * 24 23 22 43 43 H 1.08999 * 110.48758 * 156.67906 * 24 23 22 44 44 H 1.09004 * 110.03649 * 95.60673 * 25 24 23 45 45 H 1.09005 * 110.03421 * 216.98931 * 25 24 23 46 46 H 1.09007 * 110.03316 * 119.28148 * 26 25 24 47 47 H 1.08995 * 110.03358 * 240.66549 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6179 0.0000 4 1 2.3882 2.1081 -1.3947 5 1 1.5025 2.6196 0.8041 6 1 3.5945 1.4118 0.5905 7 6 2.0089 -1.2042 0.0005 8 1 1.4697 -2.1391 -0.0391 9 7 3.3764 -1.2046 0.0514 10 6 4.0895 -0.7259 -0.9872 11 8 5.3056 -0.7409 -0.9487 12 6 3.3980 -0.1854 -2.1667 13 6 2.0403 -0.2447 -2.4345 14 6 1.8767 0.4035 -3.6606 15 7 3.0566 0.7972 -4.0676 16 7 3.9666 0.4709 -3.2218 17 6 5.3957 0.7590 -3.3661 18 6 6.0436 -0.3060 -4.2531 19 6 6.5208 -1.5459 -3.4786 20 6 7.7622 -1.5378 -4.3862 21 6 7.5235 -0.0294 -4.5668 22 6 4.0652 -1.7256 1.2348 23 6 3.5122 -3.1261 1.6123 24 6 3.8612 -3.2323 3.1175 25 6 3.6271 -1.8092 3.6647 26 6 3.7568 -0.8511 2.4677 27 1 -0.4850 0.8368 -0.0733 28 1 1.2714 -0.6946 -1.8239 29 1 0.9425 0.5503 -4.1824 30 1 5.5242 1.7401 -3.8234 31 1 5.8689 0.7510 -2.3842 32 1 5.4474 -0.5427 -5.1344 33 1 6.7447 -1.3467 -2.4307 34 1 5.8838 -2.4194 -3.6178 35 1 7.6362 -2.1128 -5.3035 36 1 8.6881 -1.7737 -3.8615 37 1 7.6961 0.3212 -5.5842 38 1 8.0211 0.5856 -3.8170 39 1 5.1401 -1.7724 1.0596 40 1 4.0140 -3.9087 1.0431 41 1 2.4335 -3.1690 1.4619 42 1 4.9032 -3.5245 3.2479 43 1 3.2015 -3.9448 3.6128 44 1 2.6289 -1.7345 4.0962 45 1 4.3780 -1.5705 4.4180 46 1 2.8215 -0.3115 2.3182 47 1 4.5705 -0.1467 2.6397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601206322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:44 Heat of formation + Delta-G solvation = 78.206826 kcal Electronic energy + Delta-G solvation = -28768.381882 eV Core-core repulsion = 25147.146216 eV Total energy + Delta-G solvation = -3621.235667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76524 -39.06727 -38.58703 -36.79038 -34.67078 -32.45933 -32.04066 -29.97521 -28.12622 -27.67789 -27.07281 -25.40606 -24.91848 -23.20748 -22.12405 -20.83836 -20.11447 -19.26123 -19.19526 -19.09168 -17.44884 -16.15058 -15.93235 -15.56609 -15.41480 -14.99779 -14.76777 -14.14173 -14.05876 -13.74830 -13.68217 -13.32968 -12.94241 -12.86887 -12.63748 -12.31927 -12.23660 -11.86538 -11.78238 -11.39805 -11.28648 -11.21134 -10.86094 -10.77124 -10.66899 -10.50890 -10.43506 -10.21473 -10.19026 -10.06572 -10.00899 -9.91412 -9.74554 -9.00609 -8.58579 -8.33089 -7.88590 -7.46532 -6.48359 -4.44668 2.21778 3.12349 3.16055 3.25107 3.31168 3.49070 4.11043 4.23701 4.32516 4.72638 4.78884 4.80809 4.89129 5.01623 5.22045 5.24882 5.33999 5.40692 5.50192 5.66105 5.74708 5.77559 5.88555 5.93191 5.98483 6.00660 6.07702 6.08100 6.11878 6.14584 6.23018 6.25855 6.33148 6.39317 6.40889 6.46609 6.55821 6.65248 6.76797 6.82872 6.91439 7.00918 7.06888 7.56116 7.60985 7.67880 7.84401 8.35327 8.82315 8.94858 9.13719 9.59565 10.51351 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.006441 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.878035 B = 4345.857678 C = 5770.733610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.097 3.903 3 Si 0.859 3.141 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.357 4.357 8 H 0.103 0.897 9 N -0.449 5.449 10 C 0.565 3.435 11 O -0.593 6.593 12 C -0.031 4.031 13 C -0.165 4.165 14 C -0.031 4.031 15 N -0.298 5.298 16 N -0.268 5.268 17 C 0.129 3.871 18 C -0.122 4.122 19 C -0.132 4.132 20 C -0.143 4.143 21 C -0.128 4.128 22 C 0.137 3.863 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.132 4.132 27 H 0.278 0.722 28 H 0.210 0.790 29 H 0.173 0.827 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.194 -1.825 -1.717 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.112 4.112 3 Si 0.685 3.315 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.120 0.880 9 N -0.168 5.168 10 C 0.355 3.645 11 O -0.478 6.478 12 C -0.158 4.158 13 C -0.193 4.193 14 C -0.207 4.207 15 N -0.131 5.131 16 N -0.057 5.057 17 C 0.008 3.992 18 C -0.141 4.141 19 C -0.169 4.169 20 C -0.181 4.181 21 C -0.166 4.166 22 C 0.034 3.966 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.171 4.171 27 H 0.089 0.911 28 H 0.226 0.774 29 H 0.191 0.809 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.280 -1.144 -2.479 9.674 hybrid contribution -0.357 0.734 0.510 0.963 sum 8.923 -0.410 -1.968 9.147 Atomic orbital electron populations 1.69648 1.05856 1.28806 1.45122 1.25630 0.95153 0.98386 0.92023 0.87076 0.81042 0.83874 0.79522 1.18749 1.21450 1.18473 1.18763 0.78823 0.94794 1.56095 0.88009 1.43189 1.06451 1.55583 1.11621 1.17416 0.85753 0.79452 0.81907 1.90530 1.13615 1.61632 1.82040 1.21299 0.93954 1.06790 0.93738 1.24024 0.96299 1.01997 0.96965 1.23598 0.95194 1.04125 0.97822 1.72951 0.98607 1.22606 1.18953 1.45562 1.07032 1.39852 1.13209 1.22098 0.75153 0.98718 1.03200 1.22871 0.95627 0.96644 0.98957 1.23119 0.96060 0.97108 1.00595 1.22811 0.99007 0.96177 1.00097 1.22843 0.95212 0.97131 1.01455 1.21968 0.96683 0.92634 0.85363 1.22781 1.02973 0.96149 0.94381 1.22264 1.00407 0.96711 0.96473 1.22024 1.01022 0.95017 0.97387 1.22433 1.02310 0.98079 0.94259 0.91118 0.77386 0.80944 0.89923 0.86684 0.89101 0.87282 0.92297 0.90755 0.91575 0.91597 0.89907 0.89670 0.92483 0.89438 0.92379 0.92132 0.91962 0.92792 0.90247 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.91 13.63 55.50 0.76 -21.15 16 2 C 0.10 2.40 2.87 -17.45 -0.05 2.35 16 3 Si 0.86 20.84 22.91 -169.99 -3.89 16.95 16 4 H -0.26 -6.62 6.44 56.52 0.36 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.51 6.88 56.52 0.39 -6.12 16 7 C -0.36 -8.57 5.66 -15.01 -0.09 -8.66 16 8 H 0.10 2.59 7.33 -52.49 -0.38 2.20 16 9 N -0.45 -10.19 1.85 -107.12 -0.20 -10.38 16 10 C 0.57 13.18 5.92 -12.70 -0.08 13.10 16 11 O -0.59 -13.66 11.43 5.21 0.06 -13.60 16 12 C -0.03 -0.72 4.70 -82.06 -0.39 -1.10 16 13 C -0.17 -3.77 6.84 -38.95 -0.27 -4.04 16 14 C -0.03 -0.65 12.00 -17.43 -0.21 -0.86 16 15 N -0.30 -6.30 11.90 30.59 0.36 -5.94 16 16 N -0.27 -5.67 3.35 -57.14 -0.19 -5.86 16 17 C 0.13 2.28 5.78 -4.04 -0.02 2.26 16 18 C -0.12 -1.87 3.96 -89.81 -0.36 -2.22 16 19 C -0.13 -2.08 7.14 -25.92 -0.19 -2.26 16 20 C -0.14 -1.77 8.08 -25.92 -0.21 -1.98 16 21 C -0.13 -1.56 7.64 -25.92 -0.20 -1.76 16 22 C 0.14 2.74 3.25 -66.08 -0.21 2.52 16 23 C -0.12 -2.17 6.39 -24.55 -0.16 -2.33 16 24 C -0.12 -1.75 6.82 -25.08 -0.17 -1.92 16 25 C -0.12 -1.79 6.80 -25.62 -0.17 -1.97 16 26 C -0.13 -2.51 6.43 -25.61 -0.16 -2.67 16 27 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.21 5.05 4.14 -52.49 -0.22 4.84 16 29 H 0.17 3.01 8.06 -52.48 -0.42 2.59 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.12 2.16 5.83 -51.93 -0.30 1.86 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.11 1.94 5.75 -51.93 -0.30 1.64 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.09 1.73 7.00 -51.93 -0.36 1.37 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.67 6.57 -51.93 -0.34 1.33 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.70 6.04 -51.93 -0.31 1.39 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -26.83 350.63 -8.07 -34.90 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -7.32 Total: 11.34 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.93 Total: -11.54 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.73 Total: -43.34 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.06 Total: -13.60 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -3.89 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.83 -8.07 -34.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.108 kcal (2) G-P(sol) polarization free energy of solvation -26.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds