Wall clock time and date at job start Tue Mar 31 2020 11:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86810 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46652 * 275.05291 * 3 2 1 5 5 H 1.48498 * 109.47095 * 35.05363 * 3 2 1 6 6 H 1.48498 * 109.46957 * 155.05420 * 3 2 1 7 7 C 1.39047 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00028 * 2.45209 * 7 2 1 9 9 N 1.36844 * 120.00094 * 182.46136 * 7 2 1 10 10 C 1.34779 * 119.99617 * 293.02184 * 9 7 2 11 11 O 1.21676 * 119.99893 * 180.87360 * 10 9 7 12 12 C 1.47018 * 119.99909 * 0.87812 * 10 9 7 13 13 C 1.38519 * 126.89945 * 351.53868 * 12 10 9 14 14 C 1.39648 * 105.35001 * 179.91810 * 13 12 10 15 15 N 1.30875 * 107.88049 * 0.35529 * 14 13 12 16 16 N 1.28442 * 110.95009 * 359.77248 * 15 14 13 17 17 C 1.46497 * 125.19305 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47326 * 277.23460 * 17 16 15 19 19 C 1.53782 * 113.61674 * 272.58686 * 18 17 16 20 20 C 1.53780 * 87.07951 * 220.01485 * 19 18 17 21 21 C 1.53782 * 87.08428 * 25.43252 * 20 19 18 22 22 C 1.46498 * 120.00329 * 113.02694 * 9 7 2 23 23 C 1.55236 * 110.47024 * 49.99578 * 22 9 7 24 24 C 1.54886 * 102.58668 * 203.39709 * 23 22 9 25 25 C 1.54258 * 104.31559 * 37.93314 * 24 23 22 26 26 C 1.53872 * 106.60016 * 336.32250 * 25 24 23 27 27 H 0.96998 * 120.00152 * 5.00849 * 1 2 3 28 28 H 1.07999 * 127.32208 * 0.03341 * 13 12 10 29 29 H 1.08003 * 126.05659 * 180.12560 * 14 13 12 30 30 H 1.09004 * 109.47038 * 37.23667 * 17 16 15 31 31 H 1.09003 * 109.47305 * 157.23452 * 17 16 15 32 32 H 1.09004 * 112.84811 * 43.89330 * 18 17 16 33 33 H 1.08995 * 113.61482 * 334.56706 * 19 18 17 34 34 H 1.09000 * 113.60826 * 105.46711 * 19 18 17 35 35 H 1.08996 * 113.61871 * 270.87870 * 20 19 18 36 36 H 1.09004 * 113.60899 * 139.98170 * 20 19 18 37 37 H 1.08991 * 113.61718 * 220.01610 * 21 20 19 38 38 H 1.09000 * 113.69034 * 89.12037 * 21 20 19 39 39 H 1.09002 * 110.43609 * 172.65432 * 22 9 7 40 40 H 1.09003 * 110.89736 * 85.10535 * 23 22 9 41 41 H 1.08996 * 110.76521 * 321.62563 * 23 22 9 42 42 H 1.09001 * 110.49013 * 279.18649 * 24 23 22 43 43 H 1.08999 * 110.48758 * 156.67906 * 24 23 22 44 44 H 1.09004 * 110.03649 * 95.60673 * 25 24 23 45 45 H 1.09005 * 110.03421 * 216.98931 * 25 24 23 46 46 H 1.09007 * 110.03316 * 119.28148 * 26 25 24 47 47 H 1.08995 * 110.03358 * 240.66549 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6179 0.0000 4 1 2.3882 2.1081 -1.3947 5 1 1.5025 2.6196 0.8041 6 1 3.5945 1.4118 0.5905 7 6 2.0089 -1.2042 0.0005 8 1 1.4697 -2.1391 -0.0391 9 7 3.3764 -1.2046 0.0514 10 6 4.0895 -0.7259 -0.9872 11 8 5.3056 -0.7409 -0.9487 12 6 3.3980 -0.1854 -2.1667 13 6 2.0403 -0.2447 -2.4345 14 6 1.8767 0.4035 -3.6606 15 7 3.0566 0.7972 -4.0676 16 7 3.9666 0.4709 -3.2218 17 6 5.3957 0.7590 -3.3661 18 6 6.0436 -0.3060 -4.2531 19 6 6.5208 -1.5459 -3.4786 20 6 7.7622 -1.5378 -4.3862 21 6 7.5235 -0.0294 -4.5668 22 6 4.0652 -1.7256 1.2348 23 6 3.5122 -3.1261 1.6123 24 6 3.8612 -3.2323 3.1175 25 6 3.6271 -1.8092 3.6647 26 6 3.7568 -0.8511 2.4677 27 1 -0.4850 0.8368 -0.0733 28 1 1.2714 -0.6946 -1.8239 29 1 0.9425 0.5503 -4.1824 30 1 5.5242 1.7401 -3.8234 31 1 5.8689 0.7510 -2.3842 32 1 5.4474 -0.5427 -5.1344 33 1 6.7447 -1.3467 -2.4307 34 1 5.8838 -2.4194 -3.6178 35 1 7.6362 -2.1128 -5.3035 36 1 8.6881 -1.7737 -3.8615 37 1 7.6961 0.3212 -5.5842 38 1 8.0211 0.5856 -3.8170 39 1 5.1401 -1.7724 1.0596 40 1 4.0140 -3.9087 1.0431 41 1 2.4335 -3.1690 1.4619 42 1 4.9032 -3.5245 3.2479 43 1 3.2015 -3.9448 3.6128 44 1 2.6289 -1.7345 4.0962 45 1 4.3780 -1.5705 4.4180 46 1 2.8215 -0.3115 2.3182 47 1 4.5705 -0.1467 2.6397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601206322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:43 Heat of formation + Delta-G solvation = 64.616300 kcal Electronic energy + Delta-G solvation = -28768.971212 eV Core-core repulsion = 25147.146216 eV Total energy + Delta-G solvation = -3621.824996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44596 -40.78517 -39.76603 -38.35975 -36.43037 -34.00384 -33.89633 -31.68854 -29.52874 -29.11360 -28.60060 -26.83298 -26.48784 -24.55184 -23.76264 -22.52314 -21.55165 -20.82184 -20.75110 -20.35141 -19.18291 -17.92871 -17.60092 -17.17056 -16.85360 -16.37506 -16.22392 -15.90912 -15.62860 -15.45504 -15.12877 -14.83608 -14.69144 -14.47323 -14.14917 -13.86413 -13.62216 -13.23390 -13.10759 -13.09454 -12.89746 -12.79850 -12.47846 -12.40753 -12.03114 -11.93663 -11.85797 -11.81530 -11.65147 -11.37908 -11.35945 -11.21602 -11.19187 -10.78250 -10.50977 -9.99341 -9.63116 -9.28110 -8.45034 -6.39484 0.45303 1.14759 1.25304 1.30929 1.57261 1.77829 2.13391 2.44175 2.64579 2.85017 3.46836 3.66122 3.71152 3.81945 3.85764 3.87078 3.98260 3.99570 4.13540 4.20877 4.40229 4.43940 4.54689 4.59272 4.65945 4.68683 4.75039 4.77645 4.85723 4.91177 4.92093 4.94176 5.01612 5.03934 5.09441 5.15972 5.25629 5.26008 5.31386 5.40049 5.45697 5.57281 5.59940 5.73215 5.86383 5.94445 6.02907 6.38867 6.97384 7.14541 7.30963 7.73506 8.57486 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.006441 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.878035 B = 4345.857678 C = 5770.733610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.088 3.912 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.341 4.341 8 H 0.085 0.915 9 N -0.455 5.455 10 C 0.555 3.445 11 O -0.595 6.595 12 C -0.050 4.050 13 C -0.181 4.181 14 C -0.033 4.033 15 N -0.297 5.297 16 N -0.267 5.267 17 C 0.121 3.879 18 C -0.122 4.122 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.113 4.113 22 C 0.127 3.873 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.133 4.133 27 H 0.281 0.719 28 H 0.194 0.806 29 H 0.204 0.796 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 -2.027 -1.893 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.119 4.119 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.175 5.175 10 C 0.344 3.656 11 O -0.481 6.481 12 C -0.177 4.177 13 C -0.209 4.209 14 C -0.208 4.208 15 N -0.130 5.130 16 N -0.056 5.056 17 C 0.001 3.999 18 C -0.141 4.141 19 C -0.178 4.178 20 C -0.167 4.167 21 C -0.151 4.151 22 C 0.024 3.976 23 C -0.159 4.159 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.172 4.172 27 H 0.092 0.908 28 H 0.210 0.790 29 H 0.221 0.779 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.899 -1.349 -2.645 11.296 hybrid contribution -0.817 0.770 0.536 1.244 sum 10.082 -0.579 -2.109 10.317 Atomic orbital electron populations 1.69657 1.06283 1.29148 1.46667 1.25717 0.95144 0.98884 0.92152 0.86577 0.79816 0.83118 0.78300 1.20053 1.21561 1.19939 1.18504 0.79361 0.93915 1.55070 0.89739 1.43341 1.06073 1.55677 1.12445 1.17633 0.85976 0.79635 0.82312 1.90524 1.13553 1.61776 1.82202 1.21379 0.94345 1.07661 0.94315 1.23886 0.96046 1.03012 0.97959 1.24060 0.96296 1.03234 0.97189 1.72948 0.98721 1.22468 1.18872 1.45911 1.08186 1.39001 1.12519 1.22380 0.73499 1.00729 1.03250 1.22889 0.97491 0.95731 0.98021 1.23065 0.98044 0.96604 1.00132 1.22775 0.97634 0.96577 0.99680 1.22819 0.92037 0.97172 1.03041 1.22212 0.96308 0.94363 0.84698 1.22724 1.01482 0.94643 0.97024 1.22250 1.02150 0.96606 0.93782 1.22015 1.02075 0.94491 0.96299 1.22422 1.00637 0.98600 0.95493 0.90844 0.78960 0.77902 0.87887 0.88080 0.89690 0.89548 0.94355 0.89396 0.90220 0.89264 0.89116 0.90092 0.91819 0.91504 0.90331 0.90108 0.91847 0.90166 0.93194 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.65 13.63 21.68 0.30 -45.35 16 2 C 0.09 4.45 2.87 84.96 0.24 4.69 16 3 Si 0.89 43.85 22.91 68.60 1.57 45.43 16 4 H -0.27 -13.94 6.44 99.48 0.64 -13.30 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -13.94 6.88 99.48 0.68 -13.26 16 7 C -0.34 -16.79 5.66 84.11 0.48 -16.32 16 8 H 0.09 4.46 7.33 -2.91 -0.02 4.44 16 9 N -0.46 -21.14 1.85 -611.05 -1.13 -22.27 16 10 C 0.55 26.44 5.92 86.54 0.51 26.95 16 11 O -0.59 -27.95 11.43 -4.27 -0.05 -28.00 16 12 C -0.05 -2.32 4.70 40.76 0.19 -2.13 16 13 C -0.18 -8.38 6.84 22.68 0.16 -8.22 16 14 C -0.03 -1.34 12.00 85.18 1.02 -0.32 16 15 N -0.30 -12.34 11.90 -57.15 -0.68 -13.02 16 16 N -0.27 -11.28 3.35 -334.70 -1.12 -12.40 16 17 C 0.12 4.21 5.78 86.38 0.50 4.70 16 18 C -0.12 -3.61 3.96 -10.27 -0.04 -3.65 16 19 C -0.14 -4.41 7.14 31.12 0.22 -4.19 16 20 C -0.13 -2.89 8.08 31.12 0.25 -2.64 16 21 C -0.11 -2.43 7.64 31.12 0.24 -2.19 16 22 C 0.13 5.10 3.25 46.19 0.15 5.25 16 23 C -0.12 -4.12 6.39 32.01 0.20 -3.92 16 24 C -0.11 -2.91 6.82 31.67 0.22 -2.69 16 25 C -0.11 -3.18 6.80 31.32 0.21 -2.97 16 26 C -0.13 -5.00 6.43 31.32 0.20 -4.80 16 27 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.19 9.59 4.14 -2.91 -0.01 9.57 16 29 H 0.20 6.80 8.06 -2.91 -0.02 6.78 16 30 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 31 H 0.10 3.81 5.83 -2.39 -0.01 3.80 16 32 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.09 3.11 5.75 -2.39 -0.01 3.10 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 39 H 0.08 3.30 7.00 -2.39 -0.02 3.28 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.57 6.57 -2.39 -0.02 2.55 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.05 2.17 6.04 -2.38 -0.01 2.15 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -58.81 350.63 4.52 -54.28 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.88 Total: 33.78 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.76 Total: -12.45 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -2.63 Total: -93.04 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.57 Total: 45.43 kcal Total: -58.81 4.52 -54.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.898 kcal (2) G-P(sol) polarization free energy of solvation -58.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds