Wall clock time and date at job start Tue Mar 31 2020 11:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 120.00254 * 2 1 4 4 C 1.38228 * 120.00300 * 179.72054 * 3 2 1 5 5 C 1.38233 * 120.00200 * 0.25782 * 4 3 2 6 6 C 1.50704 * 120.00302 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47127 * 90.00004 * 6 5 4 8 8 C 1.34779 * 119.99977 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99925 * 354.91697 * 8 7 6 10 10 N 1.34782 * 119.99944 * 174.91785 * 8 7 6 11 11 C 1.47077 * 120.88052 * 184.71787 * 10 8 7 12 12 C 1.53693 * 108.27908 * 128.75228 * 11 10 8 13 13 N 1.46901 * 109.25541 * 54.08063 * 12 11 10 14 14 C 1.46902 * 110.99867 * 172.61049 * 13 12 11 15 15 C 1.50703 * 109.46705 * 294.30065 * 14 13 12 16 16 H 1.07999 * 120.00455 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99706 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00050 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47385 * 59.99874 * 19 17 15 21 21 H 1.48499 * 109.46955 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46932 * 299.99570 * 19 17 15 23 23 C 1.46901 * 111.27032 * 296.75692 * 13 12 11 24 24 C 1.47080 * 120.88161 * 4.99137 * 10 8 7 25 25 C 1.38242 * 119.99795 * 359.97438 * 5 4 3 26 26 C 1.38236 * 119.99922 * 0.02671 * 25 5 4 27 27 H 1.09004 * 109.46421 * 90.00427 * 1 2 3 28 28 H 1.09001 * 109.47330 * 209.99700 * 1 2 3 29 29 H 1.08998 * 109.47074 * 330.00488 * 1 2 3 30 30 H 1.08003 * 119.99513 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.99984 * 180.27954 * 4 3 2 32 32 H 1.09005 * 109.46999 * 209.99917 * 6 5 4 33 33 H 1.08998 * 109.47041 * 329.99738 * 6 5 4 34 34 H 0.97009 * 120.00141 * 359.97438 * 7 6 5 35 35 H 1.08992 * 109.62719 * 248.52367 * 11 10 8 36 36 H 1.09007 * 109.62634 * 9.09982 * 11 10 8 37 37 H 1.08999 * 109.64771 * 294.07824 * 12 11 10 38 38 H 1.08999 * 109.42461 * 173.94766 * 12 11 10 39 39 H 1.08997 * 109.47256 * 54.30357 * 14 13 12 40 40 H 1.09000 * 109.46850 * 174.30769 * 14 13 12 41 41 H 0.97003 * 120.00186 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.48994 * 303.14739 * 23 13 12 43 43 H 1.08991 * 109.49253 * 183.06447 * 23 13 12 44 44 H 1.08997 * 109.62918 * 350.89683 * 24 10 8 45 45 H 1.09000 * 109.62495 * 111.48125 * 24 10 8 46 46 H 1.08002 * 120.00143 * 179.97438 * 25 5 4 47 47 H 1.08002 * 119.99614 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0001 0.0063 6 6 5.7787 0.0001 0.0132 7 7 6.2607 -0.0031 1.3966 8 6 7.5846 -0.0031 1.6490 9 8 8.3782 -0.0939 0.7324 10 7 8.0288 0.0974 2.9175 11 6 9.4669 0.2029 3.2077 12 6 9.6848 1.4117 4.1315 13 7 8.8214 1.2806 5.3127 14 6 9.1237 2.3219 6.3039 15 6 10.5155 2.1132 6.8430 16 1 11.1155 1.2897 6.4848 17 6 11.0227 2.9735 7.7935 18 7 10.2919 3.9760 8.2300 19 14 12.7481 2.7153 8.4612 20 1 13.7269 2.7939 7.3473 21 1 13.0537 3.7678 9.4633 22 1 12.8354 1.3793 9.1036 23 6 7.4007 1.3055 4.9397 24 6 7.0888 0.0984 4.0487 25 6 3.5805 -1.1971 0.0014 26 6 2.1982 -1.1971 -0.0044 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1325 0.0104 32 1 6.1444 -0.8888 -0.5010 33 1 6.1444 0.8912 -0.4969 34 1 5.6269 -0.0044 2.1311 35 1 9.8082 -0.7063 3.7026 36 1 10.0183 0.3464 2.2784 37 1 9.4357 2.3296 3.5989 38 1 10.7281 1.4446 4.4454 39 1 9.0601 3.3023 5.8319 40 1 8.4051 2.2648 7.1214 41 1 10.6488 4.5815 8.8985 42 1 7.1835 2.2248 4.3959 43 1 6.7876 1.2613 5.8398 44 1 6.0673 0.1729 3.6759 45 1 7.2060 -0.8206 4.6230 46 1 4.1205 -2.1325 0.0014 47 1 1.6583 -2.1325 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601257546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:49 Heat of formation + Delta-G solvation = 6.123399 kcal Electronic energy + Delta-G solvation = -25915.005062 eV Core-core repulsion = 22290.643623 eV Total energy + Delta-G solvation = -3624.361438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35887 -39.61472 -37.63920 -35.32790 -34.38718 -32.86954 -32.31278 -31.26706 -30.68074 -28.88727 -27.79073 -25.55893 -24.64591 -23.10376 -23.05457 -22.13199 -21.15139 -20.69519 -19.33135 -18.06347 -16.56519 -16.30881 -16.03704 -15.99197 -15.37562 -15.26011 -14.82885 -14.54662 -14.35925 -14.06790 -13.94188 -13.83202 -13.75241 -13.51493 -13.37764 -12.92425 -12.72201 -12.35241 -12.28905 -12.15064 -11.96745 -11.39709 -11.30579 -11.27601 -11.12897 -10.83048 -10.75107 -10.60316 -10.50648 -10.02460 -9.84859 -9.28998 -9.26397 -9.14088 -8.93171 -8.47618 -8.30760 -7.32058 -6.05821 -4.07646 0.87717 1.07523 2.76979 3.32218 3.32729 3.36657 3.39579 3.43459 4.03127 4.35307 4.39759 4.46512 4.58625 4.69214 4.79425 4.86501 5.12602 5.20043 5.22474 5.25731 5.29049 5.34477 5.39242 5.43906 5.44265 5.54526 5.67103 5.75151 5.76407 5.84358 5.94518 6.04921 6.05314 6.20414 6.24865 6.28981 6.41744 6.44220 6.57071 6.65428 6.70775 7.07556 7.22382 7.28610 7.74464 8.00615 8.03165 8.13080 8.48058 8.69283 8.99392 9.56859 11.04953 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.002319 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.542056 B =12071.636403 C =12827.345920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.123 4.123 4 C -0.095 4.095 5 C -0.112 4.112 6 C 0.181 3.819 7 N -0.747 5.747 8 C 0.707 3.293 9 O -0.597 6.597 10 N -0.625 5.625 11 C 0.133 3.867 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.119 3.881 25 C -0.095 4.095 26 C -0.124 4.124 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.024 0.976 38 H 0.097 0.903 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.124 0.876 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 -8.644 -16.215 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.057 3.943 7 N -0.406 5.406 8 C 0.409 3.591 9 O -0.476 6.476 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.079 4.079 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.089 4.089 24 C -0.005 4.005 25 C -0.114 4.114 26 C -0.142 4.142 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.115 0.885 39 H 0.009 0.991 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.142 0.858 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.145 -8.985 -16.545 26.148 hybrid contribution 0.316 0.846 0.551 1.058 sum -17.828 -8.138 -15.995 25.296 Atomic orbital electron populations 1.20821 0.91149 1.02947 1.02396 1.20005 0.96184 0.93256 0.98666 1.21060 0.94100 0.97678 1.01265 1.21134 0.94193 0.97733 0.98270 1.19915 0.94998 0.93571 1.02808 1.19964 0.88492 1.02959 0.82839 1.45320 1.05678 1.81244 1.08311 1.15826 0.82302 0.77818 0.83161 1.90886 1.54614 1.58471 1.43611 1.47410 1.08412 1.76590 1.03761 1.21833 0.78671 0.99112 0.99335 1.22456 1.00074 0.94817 0.90507 1.62080 1.00867 1.51664 1.11394 1.19719 0.97340 0.86859 0.89144 1.21107 0.99150 1.12217 1.22342 0.91801 1.24996 0.97972 0.95113 0.96519 1.69947 1.37093 1.16055 1.30698 0.86540 0.84284 0.77789 0.78684 1.20224 1.21398 1.20127 1.22376 0.92823 0.95480 0.98200 1.21762 0.91284 1.00052 0.87403 1.21112 0.94156 0.97653 0.98472 1.21046 0.94089 0.97631 1.01429 0.91092 0.91444 0.91412 0.85890 0.85714 0.90842 0.90996 0.76726 0.91155 0.89365 0.95744 0.88484 0.99147 0.95087 0.92834 0.95560 0.90152 0.91311 0.90635 0.85758 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.00 0.36 -0.24 16 2 C -0.08 -0.60 5.88 -104.62 -0.62 -1.22 16 3 C -0.12 -0.96 9.70 -39.59 -0.38 -1.34 16 4 C -0.09 -0.81 9.70 -39.59 -0.38 -1.20 16 5 C -0.11 -1.01 5.25 -104.62 -0.55 -1.56 16 6 C 0.18 1.92 5.80 -5.20 -0.03 1.89 16 7 N -0.75 -8.99 5.46 -66.42 -0.36 -9.36 16 8 C 0.71 11.20 8.31 -86.91 -0.72 10.48 16 9 O -0.60 -11.45 15.83 5.29 0.08 -11.37 16 10 N -0.62 -9.76 3.00 -177.91 -0.53 -10.29 16 11 C 0.13 2.24 6.61 -3.37 -0.02 2.22 16 12 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 13 N -0.53 -11.12 4.62 -235.47 -1.09 -12.20 16 14 C 0.19 4.94 4.72 -4.97 -0.02 4.91 16 15 C -0.51 -13.99 8.41 -34.44 -0.29 -14.28 16 16 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 24 C 0.12 1.62 6.59 -3.60 -0.02 1.60 16 25 C -0.10 -0.78 9.70 -39.58 -0.38 -1.17 16 26 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 32 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.40 4.10 5.96 -40.82 -0.24 3.86 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.50 7.09 -51.92 -0.37 1.13 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 44 H 0.07 0.73 5.63 -51.93 -0.29 0.44 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -32.38 380.16 -11.54 -43.92 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.49 Total: 0.96 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.59 Total: 1.87 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.25 Total: -57.50 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.38 -11.54 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.041 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds